RLG00000017561

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014828
Physical Location & Seq
Forward (+)
18284138 .. 18285348
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017561

Sequence Viewer

Length: 627 bp
ATGAACAATCGGATTGTTATTGCAAACTGTGGAGCCATAAGCTTTTTGGTGGGTTTGCTAAGCTCAACTGACAAAAGGGTACAAGAAAATGCTGTCACAGCACTTCTTAACTTGTCGATCAATAATGACAACAAGATCAGAATTGCTACTGCTGCCAAGGCAATTGAGTCTCTGGTTCATGTGCTTGAGAATGGGAGTGATGAGGCCAAGGAGAACTCAGCTGCCACATTATTTAGCCTTTTGATGATCTGGGAAAACAAGGTTCGGATTGGAAGGTCCAAGGCTATTAGGCCTCTAGTTGAGGAACGGATTGTTCAAGCTGGTGCTGTGAAGTACTTGGAGGAGTTTGTGATGAATCCAATGGTTGACCAGGCTACTGCTATTTTGGCTGCTTTTTGTACAAGTCATGAAGGGAGGATAGCAATTGTTGAGGAAGGTGGGGTTCCTGTTCTGGTTGGGGTTTTGAAGTTAGGTTCCGAAAGAGGCAAGGAGAATGCAGCTGCTGCTCTATTACAGCACTACACAAATAGTGAAGAACAATGTAGTATGGTGGTTGATAAAGGAGTTGTTCCATCTTTGGTGGCATTGGCACAATCTGGCACCCCAAGGGCCAAAGAAAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

209

Amino Acids

22.29

Weight (kDa)

6.33

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm PF00514 3 - 39 1.2e-09 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 3 - 192 1.1e-11 ARMC5
ARM_PUB PF25598 102 - 207 4.2e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AfaI GTAC 3 cut(s) 81, 335, 400
AgsI TTSAA 2 cut(s) 317, 466
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 5 cut(s) 42, 63, 221, 320, 500
AluI AGCT 5 cut(s) 42, 63, 221, 320, 500
Alw26I GTCTC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 3 cut(s) 204, 290, 609
ApeKI GCWGC 6 cut(s) 152, 221, 389, 497, 500, 503
AspS9I GGNCC 2 cut(s) 276, 609
AvaII GGWCC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 599
BbvI GCAGC 6 cut(s) 139, 208, 376, 487, 490, 509
BccI CCATC 1 cut(s) 580
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 296
BisI GCNGC 6 cut(s) 153, 222, 390, 498, 501, 504
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 6 cut(s) 154, 223, 391, 499, 502, 505
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 276, 609
BmiI GGNNCC 4 cut(s) 34, 444, 475, 601
BmrFI CCNGG 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 156, 207, 279, 605
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 4 cut(s) 156, 207, 279, 605
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 6 cut(s) 139, 208, 376, 487, 490, 509
BshFI GGCC 3 cut(s) 206, 292, 611
BshNI GGYRCC 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 3 cut(s) 206, 292, 611
Bsp1407I TGTACA 1 cut(s) 398
Bsp143I GATC 3 cut(s) 117, 135, 246
Bsp1720I GCTNAGC 1 cut(s) 59
BspANI GGCC 3 cut(s) 206, 292, 611
BspCNI CTCAG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 4 cut(s) 34, 444, 475, 601
BspT107I GGYRCC 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 156, 207, 279, 605
BssMI GATC 3 cut(s) 117, 135, 246
BssT1I CCWWGG 4 cut(s) 156, 207, 279, 605
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 59, 217
BstKTI GATC 3 cut(s) 120, 138, 249
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 117, 135, 246
BstMWI GCNNNNNNNGC 5 cut(s) 98, 152, 158, 386, 503
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 6 cut(s) 139, 208, 376, 487, 490, 509
BsuRI GGCC 3 cut(s) 206, 292, 611
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 276, 609
Csp6I GTAC 3 cut(s) 80, 334, 399
CviAII CATG 2 cut(s) 179, 407
CviQI GTAC 3 cut(s) 80, 334, 399
DdeI CTNAG 2 cut(s) 59, 217
DpnI GATC 3 cut(s) 119, 137, 248
DpnII GATC 3 cut(s) 117, 135, 246
Eco130I CCWWGG 4 cut(s) 156, 207, 279, 605
Eco147I AGGCCT 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 4 cut(s) 156, 207, 279, 605
ErhI CCWWGG 4 cut(s) 156, 207, 279, 605
FaeI CATG 2 cut(s) 182, 410
FaiI YATR 5 cut(s) 38, 180, 408, 548, 625
FatI CATG 2 cut(s) 178, 406
Fnu4HI GCNGC 6 cut(s) 153, 222, 390, 498, 501, 504
Fsp4HI GCNGC 6 cut(s) 153, 222, 390, 498, 501, 504
FspBI CTAG 1 cut(s) 296
GluI GCNGC 6 cut(s) 153, 222, 390, 498, 501, 504
HaeIII GGCC 3 cut(s) 206, 292, 611
Hin1II CATG 2 cut(s) 182, 410
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 2 cut(s) 167, 355
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 12, 140, 267, 478
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 3 cut(s) 267, 404, 428
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 23, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 152, 158, 386, 503
HpyF3I CTNAG 2 cut(s) 59, 217
Hsp92II CATG 2 cut(s) 182, 410
Kzo9I GATC 3 cut(s) 117, 135, 246
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 8 cut(s) 158, 235, 306, 356, 383, 437, 459, 582
Lsp1109I GCAGC 6 cut(s) 139, 208, 376, 487, 490, 509
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 119, 137, 248
MboI GATC 3 cut(s) 117, 135, 246
MboII GAAGA 1 cut(s) 545
MfeI CAATTG 2 cut(s) 162, 423
MluCI AATT 3 cut(s) 141, 162, 423
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 7 cut(s) 196, 295, 303, 334, 408, 424, 476
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 221, 500
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 2 cut(s) 162, 423
Mva1269I GAATGC 1 cut(s) 499
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 5 cut(s) 98, 152, 158, 386, 503
NdeII GATC 3 cut(s) 117, 135, 246
NlaIII CATG 2 cut(s) 182, 410
NlaIV GGNNCC 4 cut(s) 34, 444, 475, 601
NmuCI GTSAC 1 cut(s) 94
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 292
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 6 cut(s) 154, 223, 391, 499, 502, 505
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 4 cut(s) 34, 444, 475, 601
PspPI GGNCC 2 cut(s) 276, 609
PstNI CAGNNNCTG 1 cut(s) 503
PvuII CAGCTG 2 cut(s) 221, 500
RsaI GTAC 3 cut(s) 81, 335, 400
RsaNI GTAC 3 cut(s) 80, 334, 399
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 6 cut(s) 153, 222, 390, 498, 501, 504
Sau3AI GATC 3 cut(s) 117, 135, 246
Sau96I GGNCC 2 cut(s) 276, 609
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 371
SinI GGWCC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 141, 162, 423
SseBI AGGCCT 1 cut(s) 292
SspMI CTAG 1 cut(s) 296
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 4 cut(s) 156, 207, 279, 605
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 141, 162, 423
TatI WGTACW 2 cut(s) 333, 398
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 6 cut(s) 152, 221, 389, 497, 500, 503
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 4 cut(s) 17, 167, 368, 423
TspGWI ACGGA 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.