Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005399

Physical Location & Seq

Genomic Coordinates Reverse (-)

28714787 .. 28715804

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G327200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCTCTTATAAACTGAGCTTGTTTCTCCTGGCGCTTATCAATTGCTTGCTCTTTCTTTCTCATCCAGCATCTTGTAATGAAGAAGAAGACAAAATTTTCCAAGGACTTAACAGCTTCAAGCAATCACTAAAGAAGAACAGCAATGCAGAATGTCTAGCTGATGAAATTGCAGATGAGCTAGAAGACCAGCCATGTTCCAGTGCAGACGACTACGCAATAGAGCCGGGCAACGGCCCAAAATTCCCAAAATTCGACAAGCTCATCAAGAAGTGCCACATAGACATCAACACTACGACAGATGGCATCATCTTGCCCGTTTGTGTGCCCAACTGGGACCCAGATCTTGTGATAAAAAACTACACTCACACCCAATATGCCAAATATCTAAATGGTTCCAAGTACACAGGAGCTGGGGTTGGCACTGAGGATGATTGGGTGGTGGTGGTGTTGAGCACTGACACAGAAAGTGGAAGCTTTTCTGGTGCTCCTTCTTTGGCTGCAATTGGCATGGTTCATTACATGATGGCCATGTTGCTGGGGTTGTTCTTGATTTTGCTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.59

Weight (kDa)

4.61

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54860
fragaria_vesca	FvH4_6g05670
malus_domestica	MD04G1206600.v1.1 MD04G1206700.v1.1 MD12G1220400.v1.1 MD12G1220500.v1.1
prunus_persica	Prupe.6G327200_v2.0.a1 Prupe.6G327300_v2.0.a1
pyrus_communis	pycom04g18270 pycom12g20630
rosa_chinensis	RchiOBHm_Chr3g0454541 RchiOBHm_Chr3g0454551
rosa_laevigata	RLG00000025434 RLG00000025435
rosa_multiflora	Rmu_sc0007209.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424970 Rroxscaffold_6G00424980
rosa_rugosa	Rorug03G0000200 Rorug03G0000200
rosa_samantha	Rh3AG059800 Rh3AG059900 Rh3BG061900 Rh3BG062000 Rh3CG060700 Rh3CG060800 Rh3DG061500 Rh3DG061600
rosa_wichuraiana	Rw3G004640 Rw3G004650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	3 cut(s)	96, 242, 251
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	7 cut(s)	21, 117, 161, 181, 262, 413, 477
AluI	AGCT	7 cut(s)	21, 117, 161, 181, 262, 413, 477
Alw21I	GWGCWC	2 cut(s)	458, 490
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	3 cut(s)	3, 235, 528
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	3 cut(s)	96, 242, 251
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	236, 337
AsuC2I	CCSGG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	96, 192
Bbv12I	GWGCWC	2 cut(s)	458, 490
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	296, 520
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	2 cut(s)	158, 182
BfoI	RGCGCY	1 cut(s)	38
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	32, 228
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	236, 337
BmiI	GGNNCC	3 cut(s)	338, 339, 397
BmrFI	CCNGG	2 cut(s)	32, 228
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	80, 315
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	2 cut(s)	96, 192
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	201, 338
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	64, 436
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	8, 417
BseNI	ACTGG	2 cut(s)	201, 338
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	487
BseYI	CCCAGC	2 cut(s)	413, 538
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	5, 237, 530
BsiHKAI	GWGCWC	2 cut(s)	458, 490
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	5, 237, 530
Bsp1286I	GDGCHC	3 cut(s)	330, 458, 490
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	3 cut(s)	5, 237, 530
BspCNI	CTCAG	2 cut(s)	9, 418
BspLI	GGNNCC	3 cut(s)	338, 339, 397
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	201, 338
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	17, 426
BstF5I	GGATG	2 cut(s)	64, 436
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 226
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	2 cut(s)	96, 192
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	5, 237, 530
BtsCI	GGATG	2 cut(s)	64, 436
BtsIMutI	CAGTG	3 cut(s)	208, 423, 456
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	236, 337
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	4 cut(s)	195, 511, 523, 532
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	17, 426
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	4 cut(s)	198, 514, 526, 535
FaiI	YATR	7 cut(s)	12, 196, 281, 378, 512, 524, 533
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	4 cut(s)	194, 510, 522, 531
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	2 cut(s)	51, 443
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	2 cut(s)	158, 182
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	501
GsaI	CCCAGC	2 cut(s)	417, 542
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	5, 237, 530
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	198, 514, 526, 535
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	475
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188III	TCNNGA	2 cut(s)	268, 550
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	149, 173, 206, 503
HpyF3I	CTNAG	2 cut(s)	17, 426
Hsp92II	CATG	4 cut(s)	198, 514, 526, 535
HspAI	GCGC	1 cut(s)	35
KflI	GGGWCCC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	410, 493
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	2 cut(s)	80, 315
MaeI	CTAG	2 cut(s)	158, 182
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	5 cut(s)	95, 98, 101, 148, 197
MfeI	CAATTG	2 cut(s)	43, 504
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	3 cut(s)	330, 458, 490
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	6 cut(s)	43, 96, 168, 242, 251, 504
MluNI	TGGCCA	1 cut(s)	530
MnlI	CCTC	2 cut(s)	16, 421
Mox20I	TGGCCA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	32, 228
MunI	CAATTG	2 cut(s)	43, 504
MvaI	CCWGG	1 cut(s)	32
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	4 cut(s)	198, 514, 526, 535
NlaIV	GGNNCC	3 cut(s)	338, 339, 397
PdmI	GAANNNNTTC	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	337
PsiI	TTATAA	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	2 cut(s)	413, 538
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	338, 339, 397
PspPI	GGNCC	2 cut(s)	236, 337
PspPPI	RGGWCCY	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	236, 337
ScrFI	CCNGG	2 cut(s)	32, 228
SduI	GDGCHC	3 cut(s)	330, 458, 490
SetI	ASST	7 cut(s)	23, 119, 163, 183, 264, 415, 479
SfaNI	GCATC	2 cut(s)	80, 315
SinI	GGWCC	1 cut(s)	337
Sse9I	AATT	6 cut(s)	43, 96, 168, 242, 251, 504
SspMI	CTAG	2 cut(s)	158, 182
StyD4I	CCNGG	2 cut(s)	30, 226
StyI	CCWWGG	1 cut(s)	103
TaqI	TCGA	1 cut(s)	255
TasI	AATT	6 cut(s)	43, 96, 168, 242, 251, 504
TatI	WGTACW	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	208, 430, 463
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	3 cut(s)	96, 180, 506
TspRI	CASTG	3 cut(s)	208, 430, 463
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	3 cut(s)	96, 242, 251
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	2 cut(s)	158, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.