Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005399

Physical Location & Seq

Genomic Coordinates Reverse (-)

28715979 .. 28717142

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G327300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCTCCCTGATCAGACTTAGCTTCTTCTTCTTTGTGCTTTTTCATGCCTTCCTCTTACTTTCTCCCTTTGTGCATGGTAGTGATGAAGATGATGACAATCTTCTCCAAGGCATTAACAGTTACAGAAGATCACTAAACTTGCCAGTCCTCATCAAGAACGATAACGCAGGTTGCCTAGCAGATAGAATTGCTGATGATATAGAGGACCTGCCTTGCAGCAGCCCCACCAACGGTGCTAACATTCTGCCTAGCTCTCAGAGTCCACTTGCCAATCTTCCCAAGCACTTAAGGAAGTGCAAAATCGATGCCAACAGCACACAAGATGGGGTTATTTTGCCTGTTTGTGTGCCTAAATTGGTCCCAACTCTGGTGCTAACCAATTATACTCACTCTCCAAAATACGTAAAGTATCTGAACGATTCGAGGTTCAGTGGGGTTGGGGTTGGCTCTGAGGATAATTGGGCTGTGGTGGTTTTGGCCTCATCTAACCCAAGTGGAAACTTTGCTAATGCAGCAGGATCTTTAGTTTCAATGTTCGGTTTTGGACATTATTTGGTCTTCTTGTTGTTAGGAGTATCTCTTATCTTGGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

21.5

Weight (kDa)

5.88

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54860
fragaria_vesca	FvH4_6g05670
malus_domestica	MD04G1206600.v1.1 MD04G1206700.v1.1 MD12G1220400.v1.1 MD12G1220500.v1.1
prunus_persica	Prupe.6G327200_v2.0.a1 Prupe.6G327300_v2.0.a1
pyrus_communis	pycom04g18270 pycom12g20630
rosa_chinensis	RchiOBHm_Chr3g0454541 RchiOBHm_Chr3g0454551
rosa_laevigata	RLG00000025434 RLG00000025435
rosa_multiflora	Rmu_sc0007209.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424970 Rroxscaffold_6G00424980
rosa_rugosa	Rorug03G0000200 Rorug03G0000200
rosa_samantha	Rh3AG059800 Rh3AG059900 Rh3BG061900 Rh3BG062000 Rh3CG060700 Rh3CG060800 Rh3DG061500 Rh3DG061600
rosa_wichuraiana	Rw3G004640 Rw3G004650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	161, 219
AclWI	GGATC	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	233, 370
AflII	CTTAAG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	534
AluBI	AGCT	3 cut(s)	24, 255, 597
AluI	AGCT	3 cut(s)	24, 255, 597
AlwI	GGATC	1 cut(s)	529
AoxI	GGCC	2 cut(s)	3, 480
ApeKI	GCWGC	3 cut(s)	219, 222, 515
AspS9I	GGNCC	2 cut(s)	208, 361
AvaII	GGWCC	2 cut(s)	208, 361
BbsI	GAAGAC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	231, 234, 527
BccI	CCATC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	2 cut(s)	179, 252
BfrI	CTTAAG	1 cut(s)	289
BfuAI	ACCTGC	2 cut(s)	161, 219
BisI	GCNGC	3 cut(s)	220, 223, 516
BlsI	GCNGC	3 cut(s)	221, 224, 517
Bme18I	GGWCC	2 cut(s)	208, 361
BmgT120I	GGNCC	2 cut(s)	208, 361
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 370
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	233, 370
BseMII	CTCAG	2 cut(s)	272, 444
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	231, 234, 527
BshFI	GGCC	2 cut(s)	5, 482
BshVI	ATCGAT	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	233, 370
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	5, 482
Bsp143I	GATC	3 cut(s)	12, 131, 521
BspANI	GGCC	2 cut(s)	5, 482
BspCNI	CTCAG	2 cut(s)	271, 445
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	2 cut(s)	161, 219
BspPI	GGATC	1 cut(s)	529
BspTI	CTTAAG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	12, 131, 521
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	122, 236
BstAFI	CTTAAG	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	20, 258, 453
BstKTI	GATC	3 cut(s)	15, 134, 524
BstMBI	GATC	3 cut(s)	12, 131, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstSNI	TACGTA	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	231, 234, 527
BstV2I	GAAGAC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	5, 482
BsuTUI	ATCGAT	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	2 cut(s)	161, 219
Cfr13I	GGNCC	2 cut(s)	208, 361
ClaI	ATCGAT	1 cut(s)	306
CviAII	CATG	2 cut(s)	47, 77
CviJI	RGCY	8 cut(s)	5, 24, 225, 255, 450, 467, 482, 597
CviKI_1	RGCY	8 cut(s)	5, 24, 225, 255, 450, 467, 482, 597
DdeI	CTNAG	3 cut(s)	20, 258, 453
DpnI	GATC	3 cut(s)	14, 133, 523
DpnII	GATC	3 cut(s)	12, 131, 521
Eco105I	TACGTA	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	208, 361
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	2 cut(s)	50, 80
FaiI	YATR	4 cut(s)	48, 78, 203, 387
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	46, 76
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	220, 223, 516
Fsp4HI	GCNGC	3 cut(s)	220, 223, 516
FspBI	CTAG	2 cut(s)	179, 252
GluI	GCNGC	3 cut(s)	220, 223, 516
HaeIII	GGCC	2 cut(s)	5, 482
Hin1II	CATG	2 cut(s)	50, 80
HinfI	GANTC	2 cut(s)	262, 422
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	17, 261, 417, 454
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	122, 236
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	76, 219, 300, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	20, 258, 453
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	50, 80
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 131, 521
LpnPI	CCDG	7 cut(s)	23, 156, 159, 224, 354, 356, 504
Lsp1109I	GCAGC	3 cut(s)	231, 234, 527
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	179, 252
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	14, 133, 523
MboI	GATC	3 cut(s)	12, 131, 521
MboII	GAAGA	7 cut(s)	19, 22, 95, 101, 141, 269, 553
MflI	RGATCY	1 cut(s)	521
MluCI	AATT	4 cut(s)	189, 356, 382, 460
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	7 cut(s)	16, 65, 161, 199, 420, 448, 493
MseI	TTAA	2 cut(s)	117, 290
MslI	CAYNNNNRTG	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeII	GATC	3 cut(s)	12, 131, 521
NlaIII	CATG	2 cut(s)	50, 80
NlaIV	GGNNCC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	221, 224, 517
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	208, 361
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	117, 290
SatI	GCNGC	3 cut(s)	220, 223, 516
Sau3AI	GATC	3 cut(s)	12, 131, 521
Sau96I	GGNCC	2 cut(s)	208, 361
SchI	GAGTC	1 cut(s)	271
SetI	ASST	7 cut(s)	26, 175, 213, 257, 408, 431, 599
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	208, 361
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SnaBI	TACGTA	1 cut(s)	406
Sse9I	AATT	4 cut(s)	189, 356, 382, 460
SspMI	CTAG	2 cut(s)	179, 252
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	122, 236
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	306, 425
TasI	AATT	4 cut(s)	189, 356, 382, 460
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	117, 290
Tru9I	TTAA	2 cut(s)	117, 290
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	3 cut(s)	219, 222, 515
TspDTI	ATGAA	2 cut(s)	35, 102
TspRI	CASTG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	208, 361
XspI	CTAG	2 cut(s)	179, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.