Rorug03G0000200

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004748
Physical Location & Seq
Reverse (-)
52946 .. 54557
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0000200.1

Sequence Viewer

Length: 267 bp
ATGTTCAAAATCCAATCCTACCTCCTCTCTCACCGCCACGACTTCGCCAACCTCTTCTCCCTCTGCAACGATGCCGTTTCCCGCTCCCGTAAAATCTCCGACGACGTCGTTCAGCTTCTCGCCTCCTCACTCTCCGACCGCCCGGTGATCGGCCAGATTACGAAGCAAATGAGCGCCGCCACGAAGGAGGCAAGGGAGAAGCGGGAGCTGCTGGAGCTGGTGAGGGCAATTCTAGAAATGAGCAAAAAATTAAAGGCTGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.0

Weight (kDa)

9.91

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zw10_N PF06248 3 - 84 1.9e-08 Centromere/kinetochore Zw10 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 84
AciI CCGC 5 cut(s) 34, 82, 139, 177, 202
AcoI YGGCCR 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 3 cut(s) 115, 208, 217
AluI AGCT 3 cut(s) 115, 208, 217
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 208, 257
AspLEI GCGC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 3 cut(s) 23, 157, 232
BbvI GCAGC 2 cut(s) 195, 244
BceAI ACGGC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 143
BfaI CTAG 2 cut(s) 233, 261
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 3 cut(s) 177, 209, 258
BlsI GCNGC 3 cut(s) 178, 210, 259
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 14, 115
BseXI GCAGC 2 cut(s) 195, 244
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 5 cut(s) 34, 82, 139, 177, 202
BspANI GGCC 1 cut(s) 153
BsrBI CCGCTC 1 cut(s) 84
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 208, 214
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 195, 244
BsuRI GGCC 1 cut(s) 153
CfoI GCGC 1 cut(s) 176
CviJI RGCY 5 cut(s) 115, 153, 208, 217, 257
CviKI_1 RGCY 5 cut(s) 115, 153, 208, 217, 257
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
FauI CCCGC 2 cut(s) 89, 195
Fnu4HI GCNGC 3 cut(s) 177, 209, 258
Fsp4HI GCNGC 3 cut(s) 177, 209, 258
FspBI CTAG 2 cut(s) 233, 261
GlaI GCGC 1 cut(s) 175
GluI GCNGC 3 cut(s) 177, 209, 258
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HpaII CCGG 1 cut(s) 143
HphI GGTGA 3 cut(s) 23, 157, 232
Hpy188I TCNGA 2 cut(s) 100, 136
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 3 cut(s) 104, 107, 110
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 214
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 3 cut(s) 89, 205, 214
LpnPI CCDG 4 cut(s) 156, 167, 197, 203
Lsp1109I GCAGC 2 cut(s) 195, 244
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 233, 261
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 149
MbiI CCGCTC 1 cut(s) 84
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 46
MluCI AATT 2 cut(s) 228, 248
MmeI TCCRAC 2 cut(s) 123, 159
MnlI CCTC 8 cut(s) 32, 35, 62, 71, 133, 136, 181, 216
MseI TTAA 1 cut(s) 251
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 208, 214
NciI CCSGG 1 cut(s) 143
NdeII GATC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 178, 210, 259
PsyI GACNNNGTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 3 cut(s) 177, 209, 258
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 143
SetI ASST 6 cut(s) 24, 54, 108, 117, 210, 219
SfaNI GCATC 1 cut(s) 61
Sse9I AATT 2 cut(s) 228, 248
SsiI CCGC 5 cut(s) 34, 82, 139, 177, 202
SspMI CTAG 2 cut(s) 233, 261
StyD4I CCNGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 108
TasI AATT 2 cut(s) 228, 248
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseI GCWGC 2 cut(s) 208, 257
Tth111I GACNNNGTC 1 cut(s) 104
XbaI TCTAGA 1 cut(s) 232
XspI CTAG 2 cut(s) 233, 261
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.