pycom07g09630

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004748
Physical Location & Seq
Reverse (-)
8878567 .. 8878977
411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09630.1

Sequence Viewer

Length: 411 bp
ATGTTCGTCATCGCCGTTGATCCCAATCCTAAGATCAACAGACGAGACTCCGACAGATCGAGCCAGATCAATGCCCGGGTCATGCTCTCCAATCGGAATGGGTCAGAATTGAATTTGGGTTCCGGCGGTCCTAATTCGACCAAAAACGGGTTGAATTTCATTGCAAATGGGATGGATTTGAAATTTGACGCTCTGGTTCAGGAAGCAAATGGGAGATTTTGTGGTTTGAAATTGGGTTCGAATGGTTTTGATTTGAAATTTGATGGTGTGGGTTCGAATTCGAATACAAGTGTGTCGAATTCGAGTTCTGGTTATCCTAGTTCGGTCAAAAACTGGTTGAATTTCAGTACAAATGCATTGGATTTGAAGCTTGATCCTCTGGGGAAGGAGGGGGAAAGTGGAGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.45

Weight (kDa)

7.83

Isoelectric Point (pI)

19.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AclWI GGATC 2 cut(s) 14, 368
AcsI RAATTY 7 cut(s) 112, 154, 182, 257, 277, 298, 340
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 7 cut(s) 112, 154, 181, 229, 256, 340, 367
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 14, 368
Ama87I CYCGRG 1 cut(s) 75
ApoI RAATTY 7 cut(s) 112, 154, 182, 257, 277, 298, 340
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 76, 77
AsuII TTCGAA 3 cut(s) 239, 275, 281
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 128
BccI CCATC 2 cut(s) 166, 257
BcnI CCSGG 2 cut(s) 76, 77
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 76, 77
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 76, 77
Bpu14I TTCGAA 3 cut(s) 239, 275, 281
BpuMI CCSGG 2 cut(s) 76, 77
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 76, 123
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 75
Bsp119I TTCGAA 3 cut(s) 239, 275, 281
Bsp143I GATC 5 cut(s) 19, 33, 56, 66, 373
BspACI CCGC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 14, 368
BspT104I TTCGAA 3 cut(s) 239, 275, 281
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 5 cut(s) 19, 33, 56, 66, 373
BstBI TTCGAA 3 cut(s) 239, 275, 281
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 5 cut(s) 22, 36, 59, 69, 376
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 5 cut(s) 19, 33, 56, 66, 373
BstSCI CCNGG 2 cut(s) 74, 75
BtsCI GGATG 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 128
Cfr9I CCCGGG 1 cut(s) 75
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 82
CviJI RGCY 2 cut(s) 63, 370
CviKI_1 RGCY 2 cut(s) 63, 370
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 30
DpnI GATC 5 cut(s) 21, 35, 58, 68, 375
DpnII GATC 5 cut(s) 19, 33, 56, 66, 373
Eco47I GGWCC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 75
EcoRI GAATTC 2 cut(s) 277, 298
EcoT22I ATGCAT 1 cut(s) 358
FaeI CATG 1 cut(s) 85
FaiI YATR 1 cut(s) 83
FatI CATG 1 cut(s) 81
FokI GGATG 1 cut(s) 184
FspBI CTAG 1 cut(s) 318
HapII CCGG 2 cut(s) 76, 123
HgaI GACGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 47
HpaII CCGG 2 cut(s) 76, 123
Hpy188I TCNGA 3 cut(s) 52, 96, 106
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 164, 356
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 5 cut(s) 19, 33, 56, 66, 373
LpnPI CCDG 8 cut(s) 77, 89, 136, 179, 185, 294, 319, 365
MaeI CTAG 1 cut(s) 318
MalI GATC 5 cut(s) 21, 35, 58, 68, 375
MboI GATC 5 cut(s) 19, 33, 56, 66, 373
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 382, 387, 395
Mph1103I ATGCAT 1 cut(s) 358
MspI CCGG 2 cut(s) 76, 123
MspR9I CCNGG 2 cut(s) 76, 77
NciI CCSGG 2 cut(s) 76, 77
NdeII GATC 5 cut(s) 19, 33, 56, 66, 373
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 358
NspV TTCGAA 3 cut(s) 239, 275, 281
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
Sau3AI GATC 5 cut(s) 19, 33, 56, 66, 373
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 76, 77
SetI ASST 1 cut(s) 372
SfuI TTCGAA 3 cut(s) 239, 275, 281
SinI GGWCC 1 cut(s) 128
SmaI CCCGGG 1 cut(s) 77
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 74, 75
TaqI TCGA 7 cut(s) 59, 137, 239, 275, 281, 296, 302
TaqII GACCGA 1 cut(s) 313
TatI WGTACW 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 148
TspMI CCCGGG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 7 cut(s) 112, 154, 182, 257, 277, 298, 340
XmaI CCCGGG 1 cut(s) 75
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.