Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004748

Physical Location & Seq

Genomic Coordinates Forward (+)

11386160 .. 11388326

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGCTACAGCCCAACCGAAAATTGGGCCAAAAAACCCTTAGGTATATATATATATATCACAGCCCAGCCCAACCCAATAAAAAAAAAATTATACCCTTATGTACAGATGGACAAAGCATATTGCTTCCCTAATTCCCTTGCTCGTCAGTCAGTCCCTGCTCATCTCCTCCAGTCCTCCATCCGTCGATCGCAGGGAGCTTTGTCGTTGTTTGAGGAAGAGGAGGAGGAGAGAGACGAGCAGGCGAGTCAAGATTTGATCGGATTGACTGAGAATGAGGGATTTGGGAGAAAAGAGTCGAATTTGAATAACGGGTCGGGTCCGAATTTGGGTTCGGGTGGTGGTTTGATTGGGAGAAGTAATGGGAATGGTGTTGATTTGAAATTTAAGGGTGTAGATATAAATGGGAGCTCGAATTCGAGTGGGGCAAAGTTGAATGAGGAAGAAGGGAATGGGGATTCTGATGAGGAGGACGATGATGGATGGGAATTCAAGGCTGTAGAGCCAAAGCAAAAGGGGAAAGGGGTTGTGGAAGTAGCAGAGGTGAGAGCAGAATCAAGTACATTCGTTAACGGAGGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

20.98

Weight (kDa)

4.73

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54920 AT1G54920 AT1G54920 AT1G54920
fragaria_vesca	FvH4_3g17890 FvH4_3g29010 FvH4_5g29781 FvH4_6g05680 FvH4_6g05680 FvH4_6g05680
malus_domestica	MD04G1206500.v1.1 MD12G1220300.v1.1
prunus_persica	Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1
pyrus_communis	pycom04g18260 pycom07g09630 pycom12g20620
rosa_chinensis	RchiOBHm_Chr3g0454571
rosa_laevigata	RLG00000025433
rosa_multiflora	Rmu_co8510799.1_g000001 Rmu_sc0043068.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424960
rosa_rugosa	Rorug03G0000200 Rorug03G0000300
rosa_samantha	Rh3AG060000 Rh3BG062100 Rh3CG060900 Rh3DG061700
rosa_wichuraiana	Rw3G004660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	5 cut(s)	301, 325, 383, 415, 488
AfaI	GTAC	2 cut(s)	105, 562
AfiI	CCNNNNNNNGG	2 cut(s)	24, 329
AgsI	TTSAA	4 cut(s)	307, 382, 436, 493
AluBI	AGCT	2 cut(s)	200, 411
AluI	AGCT	2 cut(s)	200, 411
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	228
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	5 cut(s)	301, 325, 383, 415, 488
AspS9I	GGNCC	2 cut(s)	27, 320
AsuHPI	GGTGA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	320
AxyI	CCTNAGG	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	413
BccI	CCATC	4 cut(s)	103, 188, 473, 477
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	583
BfmI	CTRYAG	2 cut(s)	7, 498
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	27, 320
BmiI	GGNNCC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 329
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	180, 488
BseLI	CCNNNNNNNGG	2 cut(s)	24, 329
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	5 cut(s)	158, 236, 239, 242, 482
BseYI	CCCAGC	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	24, 329
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	188, 258
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	188, 258
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	40, 270
BstF5I	GGATG	2 cut(s)	180, 488
BstKTI	GATC	2 cut(s)	191, 261
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	188, 258
BstMCI	CGRYCG	1 cut(s)	191
BstSFI	CTRYAG	2 cut(s)	7, 498
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	180, 488
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	27, 320
Csp6I	GTAC	2 cut(s)	104, 561
CviJI	RGCY	9 cut(s)	6, 12, 29, 65, 70, 200, 411, 497, 505
CviKI_1	RGCY	9 cut(s)	6, 12, 29, 65, 70, 200, 411, 497, 505
CviQI	GTAC	2 cut(s)	104, 561
DdeI	CTNAG	2 cut(s)	40, 270
DpnI	GATC	2 cut(s)	190, 260
DpnII	GATC	2 cut(s)	188, 258
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	411
EcoRI	GAATTC	2 cut(s)	415, 488
EcoT38I	GRGCYC	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	228
FaqI	GGGAC	1 cut(s)	140
FokI	GGATG	2 cut(s)	167, 495
FriOI	GRGCYC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	583
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	5 cut(s)	247, 296, 458, 554, 579
HpaI	GTTAAC	1 cut(s)	571
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	263, 324, 463
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	440
HpyF3I	CTNAG	2 cut(s)	40, 270
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	188, 258
LmnI	GCTCC	2 cut(s)	197, 408
LpnPI	CCDG	5 cut(s)	80, 171, 179, 185, 227
MaeI	CTAG	1 cut(s)	583
MalI	GATC	2 cut(s)	190, 260
MboI	GATC	2 cut(s)	188, 258
MboII	GAAGA	2 cut(s)	230, 455
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	8 cut(s)	22, 89, 133, 301, 325, 383, 415, 488
MlyI	GAGTC	2 cut(s)	256, 305
MseI	TTAA	2 cut(s)	387, 570
NdeII	GATC	2 cut(s)	188, 258
NlaIV	GGNNCC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	458, 554, 579
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	2 cut(s)	255, 304
PpsI	GAGTC	2 cut(s)	255, 304
Psp124BI	GAGCTC	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	2 cut(s)	27, 320
PstNI	CAGNNNCTG	1 cut(s)	158
PvuI	CGATCG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	105, 562
RsaNI	GTAC	2 cut(s)	104, 561
SacI	GAGCTC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	387, 570
Sau3AI	GATC	2 cut(s)	188, 258
Sau96I	GGNCC	2 cut(s)	27, 320
SchI	GAGTC	2 cut(s)	256, 305
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	4 cut(s)	46, 202, 413, 546
SfcI	CTRYAG	2 cut(s)	7, 498
SinI	GGWCC	1 cut(s)	320
Sse9I	AATT	8 cut(s)	22, 89, 133, 301, 325, 383, 415, 488
SspMI	CTAG	1 cut(s)	583
SstI	GAGCTC	1 cut(s)	413
TaqI	TCGA	4 cut(s)	187, 299, 413, 419
TasI	AATT	8 cut(s)	22, 89, 133, 301, 325, 383, 415, 488
TatI	WGTACW	2 cut(s)	103, 560
TfiI	GAWTC	3 cut(s)	458, 554, 579
Tru1I	TTAA	2 cut(s)	387, 570
Tru9I	TTAA	2 cut(s)	387, 570
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	5 cut(s)	301, 325, 383, 415, 488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XspI	CTAG	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.