Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8510799.1

Orthogroup ID

OG0004748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3613

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8510799.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ctgagtctgacattacctaatttgactgttaattataaatggcaggaacatactggaggaactggattttctggggggtttggtattcatgagtttaataatgtgtctgttgcatctaatggaacttctcatggaaatggtgaatggggtttttcatttgacttcaagccacgccctgtaattcaagataatttcttctcggaaacatactcgaaaagcaagcagagcaatgctgcaactgtatccaattcttccggagttgatgataatgtgtggggattcaaggatgcattttcggaaactggatcagaacataagtcggaagatgctaaggctgctactcctgctggtgtagaattgcatacattagatggtgctggtgctggtcctcgtaatgatttttttgctgggtcggattggatttctcaccagtcttctgaaagtagctttgcatttcctttcatcccaaattctggcaataaagatggtgtaatctcagattcctattccagtggcaagaaagatgacatagtaacaggattgagctttcctccagatactaaccatattgagtcagaagacaacttttgggaatttaaggatgcattttcagaatctggatctaagcttgagggggagttggtggttgccagtaattctcctaccaatataaaaccaccagcaatgggtggagaaaatcagcacagtgaggtaacattgaataatcatcggcaagctttacccttgtccatttttggaggcgaagaactagagactgatgattcctcagtccatcaagatatttctactcagacagctgcttcccagcagataaatactgccaaaagccctgctaccaatgtatccatcactgatctcatatcaagcttatacagtcaagtggaacagaacacttctaaacttcatacgccaaaagaaactgaaagtactatgcatcctgtgacgacagtgttagactctgattttgttggtgatgatgctgatgatgactcctggaagtttaaggatgctgttataaaagatcgagacccaacttctattgccaatcttgaagattcacttaaacattcttgtactaaaatccagctggatgactttgtggaattgtattgcaagttgaagaatgaatcatattttcttgcactctaccatcttgaccagaaaaagaaagctcaaggtagtgcttctctttctggtgaggatgcaacagaggctctggataaggaaatccagaaactttataatgaactgcctcaagacaacatgagattagatcagttccagtcagggaatccttcgccaagaaatgaatgccttaacgaacttcataaagctctgcaggaactgaagttccaagtccttgagccagaatatcaattgtcacaaagattgtccttggcagagaaggatttgatatcggcaattgaacttctaagacatgcagcagccatattaaggattctgagactcagatcagctgaggagcaatctaggtacattgctgcatggtctcaaatggtctccatatgtgctgaagagctgaaacatggctctttaatttggatgcaattattagaaaagaatgttcagaagcagatgctatctgaacctcgaggcaagcagtatatcattgctctgggagaaatttaccgggtagttttagttcttggagcctcaattaaactatacagcccttggattctattacagtcctcagattgttctagcttgtttggtcttctaaacgagtgttctactctatggtcaagttcaggacttgatgaagctctcagaagtatttcagatgttgatgatctcaaatatgacggaaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

618

Amino Acids

68.16

Weight (kDa)

4.75

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54920 AT1G54920 AT1G54920 AT1G54920
fragaria_vesca	FvH4_3g17890 FvH4_3g29010 FvH4_5g29781 FvH4_6g05680 FvH4_6g05680 FvH4_6g05680
malus_domestica	MD04G1206500.v1.1 MD12G1220300.v1.1
prunus_persica	Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1
pyrus_communis	pycom04g18260 pycom07g09630 pycom12g20620
rosa_chinensis	RchiOBHm_Chr3g0454571
rosa_laevigata	RLG00000025433
rosa_multiflora	Rmu_co8510799.1_g000001 Rmu_sc0043068.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424960
rosa_rugosa	Rorug03G0000200 Rorug03G0000300
rosa_samantha	Rh3AG060000 Rh3BG062100 Rh3CG060900 Rh3DG061700
rosa_wichuraiana	Rw3G004660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	36, 1037, 1263
AbsI	CCTCGAGG	1 cut(s)	1632
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	254
AclWI	GGATC	2 cut(s)	313, 628
AcsI	RAATTY	3 cut(s)	469, 593, 1665
AcuI	CTGAAG	2 cut(s)	1388, 1575
AfaI	GTAC	3 cut(s)	949, 1096, 1517
AfiI	CCNNNNNNNGG	3 cut(s)	473, 686, 1476
AgsI	TTSAA	7 cut(s)	166, 185, 283, 721, 1073, 1141, 1448
AjnI	CCWGG	1 cut(s)	1013
AloI	GAACNNNNNNTCC	4 cut(s)	1355, 1356, 1387, 1388
Alw26I	GTCTC	5 cut(s)	767, 1041, 1480, 1536, 1546
AlwI	GGATC	2 cut(s)	313, 628
AlwNI	CAGNNNCTG	2 cut(s)	617, 1366
Ama87I	CYCGRG	1 cut(s)	1632
Aor13HI	TCCGGA	1 cut(s)	254
ApeKI	GCWGC	6 cut(s)	233, 335, 818, 1463, 1466, 1523
ApoI	RAATTY	3 cut(s)	469, 593, 1665
ArsI	GACNNNNNNTTYG	2 cut(s)	968, 1000
Asp700I	GAANNNNTTC	1 cut(s)	1819
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	1673
AsuHPI	GGTGA	4 cut(s)	152, 419, 1004, 1229
AvaI	CYCGRG	1 cut(s)	1632
AvaII	GGWCC	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BbsI	GAAGAC	3 cut(s)	426, 585, 1751
BbvCI	CCTCAGC	1 cut(s)	1500
BbvI	GCAGC	6 cut(s)	220, 322, 805, 1475, 1478, 1510
BccI	CCATC	5 cut(s)	365, 479, 801, 875, 1179
BciT130I	CCWGG	1 cut(s)	1015
BciVI	GTATCC	2 cut(s)	253, 874
BcnI	CCSGG	1 cut(s)	1673
BcoDI	GTCTC	5 cut(s)	767, 1041, 1480, 1536, 1546
BfaI	CTAG	3 cut(s)	770, 1512, 1746
BfmI	CTRYAG	1 cut(s)	1358
BfuI	GTATCC	2 cut(s)	253, 874
BisI	GCNGC	6 cut(s)	234, 336, 819, 1464, 1467, 1524
BlsI	GCNGC	6 cut(s)	235, 337, 820, 1465, 1468, 1525
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	2 cut(s)	1015, 1673
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	1632
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	1693
BmrFI	CCNGG	2 cut(s)	1015, 1673
BpiI	GAAGAC	3 cut(s)	426, 585, 1751
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
BpmI	CTGGAG	2 cut(s)	75, 537
Bpu10I	CCTNAGC	2 cut(s)	330, 1500
BpuEI	CTTGAG	4 cut(s)	650, 1179, 1260, 1403
BpuMI	CCSGG	1 cut(s)	1673
BsaI	GGTCTC	3 cut(s)	1041, 1536, 1546
BsaJI	CCNNGG	2 cut(s)	1416, 1715
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 686, 1476
Bse1I	ACTGG	7 cut(s)	58, 67, 307, 430, 510, 651, 1303
Bse3DI	GCAATG	4 cut(s)	235, 690, 1518, 1650
BseAI	TCCGGA	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	1015
BseDI	CCNNGG	2 cut(s)	1416, 1715
BseGI	GGATG	8 cut(s)	292, 462, 607, 955, 1033, 1117, 1228, 1590
BseLI	CCNNNNNNNGG	3 cut(s)	473, 686, 1476
BseMI	GCAATG	4 cut(s)	235, 690, 1518, 1650
BseMII	CTCAG	8 cut(s)	510, 801, 824, 1475, 1491, 1504, 1749, 1825
BseNI	ACTGG	7 cut(s)	58, 67, 307, 430, 510, 651, 1303
BseRI	GAGGAG	1 cut(s)	1517
BseXI	GCAGC	6 cut(s)	220, 322, 805, 1475, 1478, 1510
BseYI	CCCAGC	2 cut(s)	407, 825
BsiHKCI	CYCGRG	1 cut(s)	1632
BsiSI	CCGG	2 cut(s)	255, 1672
BslI	CCNNNNNNNGG	3 cut(s)	473, 686, 1476
BsmAI	GTCTC	5 cut(s)	767, 1041, 1480, 1536, 1546
BsmI	GAATGC	1 cut(s)	1337
Bso31I	GGTCTC	3 cut(s)	1041, 1536, 1546
BsoBI	CYCGRG	1 cut(s)	1632
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
BspCNI	CTCAG	8 cut(s)	509, 800, 823, 1476, 1492, 1503, 1748, 1824
BspEI	TCCGGA	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	1693
BspMAI	CTGCAG	1 cut(s)	1362
BspPI	GGATC	2 cut(s)	313, 628
BspQI	GCTCTTC	1 cut(s)	1551
BspTNI	GGTCTC	3 cut(s)	1041, 1536, 1546
BsrDI	GCAATG	4 cut(s)	235, 690, 1518, 1650
BsrI	ACTGG	7 cut(s)	58, 67, 307, 430, 510, 651, 1303
BssECI	CCNNGG	2 cut(s)	1416, 1715
BssMI	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
BssT1I	CCWWGG	2 cut(s)	1416, 1715
Bst2UI	CCWGG	1 cut(s)	1015
Bst4CI	ACNGT	6 cut(s)	28, 241, 707, 896, 970, 1731
Bst6I	CTCTTC	1 cut(s)	1551
BstC8I	GCNNGC	3 cut(s)	221, 735, 1640
BstF5I	GGATG	8 cut(s)	292, 462, 607, 955, 1033, 1117, 1228, 1590
BstKTI	GATC	7 cut(s)	308, 623, 877, 1045, 1297, 1496, 1837
BstMAI	GTCTC	5 cut(s)	767, 1041, 1480, 1536, 1546
BstMBI	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 335, 344, 1232
BstNI	CCWGG	1 cut(s)	1015
BstNSI	RCATGY	1 cut(s)	1463
BstSCI	CCNGG	2 cut(s)	1013, 1671
BstSFI	CTRYAG	1 cut(s)	1358
BstV1I	GCAGC	6 cut(s)	220, 322, 805, 1475, 1478, 1510
BstV2I	GAAGAC	3 cut(s)	426, 585, 1751
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuI	GTATCC	2 cut(s)	253, 874
BtsCI	GGATG	8 cut(s)	292, 462, 607, 955, 1033, 1117, 1228, 1590
BtsIMutI	CAGTG	4 cut(s)	517, 712, 870, 975
Cac8I	GCNNGC	3 cut(s)	221, 735, 1640
CaiI	CAGNNNCTG	2 cut(s)	617, 1366
CciI	TCATGA	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	948, 1095, 1516
CviAII	CATG	6 cut(s)	89, 131, 1285, 1460, 1527, 1568
CviQI	GTAC	3 cut(s)	948, 1095, 1516
DpnI	GATC	7 cut(s)	307, 622, 876, 1044, 1296, 1495, 1836
DpnII	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
Eam1104I	CTCTTC	1 cut(s)	1551
EarI	CTCTTC	1 cut(s)	1551
Eco130I	CCWWGG	2 cut(s)	1416, 1715
Eco31I	GGTCTC	3 cut(s)	1041, 1536, 1546
Eco32I	GATATC	1 cut(s)	1437
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	1388, 1575
Eco88I	CYCGRG	1 cut(s)	1632
EcoRII	CCWGG	1 cut(s)	1013
EcoRV	GATATC	1 cut(s)	1437
EcoT14I	CCWWGG	2 cut(s)	1416, 1715
EcoT22I	ATGCAT	3 cut(s)	292, 607, 957
ErhI	CCWWGG	2 cut(s)	1416, 1715
FaeI	CATG	6 cut(s)	92, 134, 1288, 1463, 1530, 1571
FalI	AAGNNNNNCTT	2 cut(s)	1065, 1097
FatI	CATG	6 cut(s)	88, 130, 1284, 1459, 1526, 1567
FauNDI	CATATG	1 cut(s)	1547
Fnu4HI	GCNGC	6 cut(s)	234, 336, 819, 1464, 1467, 1524
FokI	GGATG	8 cut(s)	299, 449, 614, 942, 1040, 1124, 1235, 1597
Fsp4HI	GCNGC	6 cut(s)	234, 336, 819, 1464, 1467, 1524
FspBI	CTAG	3 cut(s)	770, 1512, 1746
GluI	GCNGC	6 cut(s)	234, 336, 819, 1464, 1467, 1524
GsaI	CCCAGC	2 cut(s)	411, 829
GsuI	CTGGAG	2 cut(s)	75, 537
HapII	CCGG	2 cut(s)	255, 1672
Hin1II	CATG	6 cut(s)	92, 134, 1288, 1463, 1530, 1571
HindIII	AAGCTT	3 cut(s)	626, 735, 886
HpaII	CCGG	2 cut(s)	255, 1672
HphI	GGTGA	4 cut(s)	152, 419, 1004, 1229
HpyAV	CCTTC	2 cut(s)	1326, 1420
HpyCH4III	ACNGT	6 cut(s)	28, 241, 707, 896, 970, 1731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 335, 344, 1232
Hsp92II	CATG	6 cut(s)	92, 134, 1288, 1463, 1530, 1571
Kpn2I	TCCGGA	1 cut(s)	254
Kzo9I	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
LguI	GCTCTTC	1 cut(s)	1551
LmnI	GCTCC	2 cut(s)	1504, 1691
Lsp1109I	GCAGC	6 cut(s)	220, 322, 805, 1475, 1478, 1510
MaeI	CTAG	3 cut(s)	770, 1512, 1746
MaeIII	GTNAC	4 cut(s)	532, 712, 961, 1401
MalI	GATC	7 cut(s)	307, 622, 876, 1044, 1296, 1495, 1836
MboI	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
MfeI	CAATTG	2 cut(s)	1397, 1443
MflI	RGATCY	1 cut(s)	620
MlyI	GAGTC	5 cut(s)	13, 581, 971, 1004, 1482
MmeI	TCCRAC	2 cut(s)	300, 393
Mph1103I	ATGCAT	3 cut(s)	292, 607, 957
MroI	TCCGGA	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	1819
MseI	TTAA	9 cut(s)	30, 96, 597, 1023, 1083, 1338, 1475, 1577, 1701
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	3 cut(s)	818, 1108, 1499
MspI	CCGG	2 cut(s)	255, 1672
MspR9I	CCNGG	2 cut(s)	1015, 1673
MunI	CAATTG	2 cut(s)	1397, 1443
Mva1269I	GAATGC	1 cut(s)	1337
MvaI	CCWGG	1 cut(s)	1015
MwoI	GCNNNNNNNGC	4 cut(s)	225, 335, 344, 1232
NciI	CCSGG	1 cut(s)	1673
NdeI	CATATG	1 cut(s)	1547
NdeII	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
NlaIII	CATG	6 cut(s)	92, 134, 1288, 1463, 1530, 1571
NlaIV	GGNNCC	1 cut(s)	1693
NmuCI	GTSAC	2 cut(s)	961, 1401
NsiI	ATGCAT	3 cut(s)	292, 607, 957
NspI	RCATGY	1 cut(s)	1463
PaeR7I	CTCGAG	1 cut(s)	1632
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	1551
PctI	GAATGC	1 cut(s)	1337
PdmI	GAANNNNTTC	1 cut(s)	1819
PfeI	GAWTC	9 cut(s)	279, 500, 614, 782, 1076, 1148, 1312, 1480, 1720
PflMI	CCANNNNNTGG	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	1013
PkrI	GCNGC	6 cut(s)	235, 337, 820, 1465, 1468, 1525
PleI	GAGTC	5 cut(s)	12, 580, 971, 1004, 1482
PpsI	GAGTC	5 cut(s)	12, 580, 971, 1004, 1482
PsiI	TTATAA	3 cut(s)	36, 1037, 1263
Psp6I	CCWGG	1 cut(s)	1013
PspFI	CCCAGC	2 cut(s)	407, 825
PspGI	CCWGG	1 cut(s)	1013
PspN4I	GGNNCC	1 cut(s)	1693
PspPI	GGNCC	1 cut(s)	386
PspXI	VCTCGAGB	1 cut(s)	1632
PsrI	GAACNNNNNNTAC	2 cut(s)	1668, 1700
PstI	CTGCAG	1 cut(s)	1362
PstNI	CAGNNNCTG	2 cut(s)	617, 1366
PsuI	RGATCY	1 cut(s)	620
PvuII	CAGCTG	3 cut(s)	818, 1108, 1499
RsaI	GTAC	3 cut(s)	949, 1096, 1517
RsaNI	GTAC	3 cut(s)	948, 1095, 1516
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	1551
SaqAI	TTAA	9 cut(s)	30, 96, 597, 1023, 1083, 1338, 1475, 1577, 1701
SatI	GCNGC	6 cut(s)	234, 336, 819, 1464, 1467, 1524
Sau3AI	GATC	7 cut(s)	305, 620, 874, 1042, 1294, 1493, 1834
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	5 cut(s)	13, 581, 971, 1004, 1482
ScrFI	CCNGG	2 cut(s)	1015, 1673
SfcI	CTRYAG	1 cut(s)	1358
Sfr274I	CTCGAG	1 cut(s)	1632
SinI	GGWCC	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	1632
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	5 cut(s)	629, 1194, 1275, 1382, 1632
SmoI	CTYRAG	5 cut(s)	629, 1194, 1275, 1382, 1632
SspMI	CTAG	3 cut(s)	770, 1512, 1746
StyD4I	CCNGG	2 cut(s)	1013, 1671
StyI	CCWWGG	2 cut(s)	1416, 1715
TaaI	ACNGT	6 cut(s)	28, 241, 707, 896, 970, 1731
TaqI	TCGA	3 cut(s)	212, 1045, 1633
TatI	WGTACW	2 cut(s)	947, 1094
TfiI	GAWTC	9 cut(s)	279, 500, 614, 782, 1076, 1148, 1312, 1480, 1720
Tru1I	TTAA	9 cut(s)	30, 96, 597, 1023, 1083, 1338, 1475, 1577, 1701
Tru9I	TTAA	9 cut(s)	30, 96, 597, 1023, 1083, 1338, 1475, 1577, 1701
TscAI	CASTG	4 cut(s)	517, 712, 877, 975
TseFI	GTSAC	2 cut(s)	961, 1401
TseI	GCWGC	6 cut(s)	233, 335, 818, 1463, 1466, 1523
Tsp45I	GTSAC	2 cut(s)	961, 1401
TspDTI	ATGAA	9 cut(s)	77, 144, 451, 914, 1161, 1281, 1337, 1344, 1818
TspRI	CASTG	4 cut(s)	517, 712, 877, 975
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	3 cut(s)	469, 593, 1665
XceI	RCATGY	1 cut(s)	1463
XhoI	CTCGAG	1 cut(s)	1632
XmnI	GAANNNNTTC	1 cut(s)	1819
XspI	CTAG	3 cut(s)	770, 1512, 1746
ZrmI	AGTACT	1 cut(s)	949
Zsp2I	ATGCAT	3 cut(s)	292, 607, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.