Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043068.1

Orthogroup ID

OG0004748

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1357

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

aacagagaagaaaagccattacgagcacgagggaagaagcagagagcaatggcggacgacgacgacgacggcttcggagacttcactttcgtctccgtcgccgccgccttcaatcccaatcccaccacctcccaacgacaatcggcggcctccgacgacgattggggcgatttcgtaaccgtcgccgcgcctccgatcaaaacccccgtcgttaacggattcgcatccgccccggcccaaacaccgcccgacccgttcgggtttttcaacgtaactaacggcgccgcagcagcgccgttaacgtcagccgggtcggatccaatccgggccgagacgaaggccgaaggggtcagtaagacgaggcagtggaagaagccgatcggatctttgccgttgtcgttgtttggggaagaggagagagacgagcaggggaatcaggatttgactgagaatgagggatttgggcaaaagggaccgaatttgaatgggagtagcggtgggattgatgatttgatatcgaatttgtatttccagaacggttcgaatcgggattctggttcgggtggtattgattttagcaagagcgggttgaatttgaggtcgaatggggtggattccaagcttggtggtttgattccgagccaaaatgggaagctggatggtggggatgtgagttcgaatggtttgaaattttttgagggtgtagatttgaatgggagctcaaattcaagtgtgttgaagacgaatgtggaagaagggaatggggattttgacgaggacgatgatgatggttgggaattcaaagctgctgaaccagagaaccgggttggcaatgagaattctaaggaacgaggaattttggaagtagcagaatcaagttcacttgtaaacgggggaatacaggcgggtattgtttgttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

32.22

Weight (kDa)

4.36

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54920 AT1G54920 AT1G54920 AT1G54920
fragaria_vesca	FvH4_3g17890 FvH4_3g29010 FvH4_5g29781 FvH4_6g05680 FvH4_6g05680 FvH4_6g05680
malus_domestica	MD04G1206500.v1.1 MD12G1220300.v1.1
prunus_persica	Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1
pyrus_communis	pycom04g18260 pycom07g09630 pycom12g20620
rosa_chinensis	RchiOBHm_Chr3g0454571
rosa_laevigata	RLG00000025433
rosa_multiflora	Rmu_co8510799.1_g000001 Rmu_sc0043068.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424960
rosa_rugosa	Rorug03G0000200 Rorug03G0000300
rosa_samantha	Rh3AG060000 Rh3BG062100 Rh3CG060900 Rh3DG061700
rosa_wichuraiana	Rw3G004660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	585
AccII	CGCG	1 cut(s)	188
AclWI	GGATC	3 cut(s)	311, 324, 391
AcsI	RAATTY	8 cut(s)	478, 520, 592, 689, 724, 797, 838, 855
AcyI	GRCGYC	1 cut(s)	282
AgsI	TTSAA	9 cut(s)	112, 268, 484, 592, 688, 712, 729, 739, 802
AluBI	AGCT	4 cut(s)	622, 655, 720, 806
AluI	AGCT	4 cut(s)	622, 655, 720, 806
Alw21I	GWGCWC	2 cut(s)	28, 722
Alw26I	GTCTC	4 cut(s)	72, 97, 326, 414
AlwI	GGATC	3 cut(s)	311, 324, 391
AoxI	GGCC	4 cut(s)	147, 234, 327, 339
ApeKI	GCWGC	3 cut(s)	287, 290, 806
ApoI	RAATTY	8 cut(s)	478, 520, 592, 689, 724, 797, 838, 855
ArsI	GACNNNNNNTTYG	6 cut(s)	56, 71, 88, 103, 192, 224
AspLEI	GCGC	3 cut(s)	190, 284, 295
AspS9I	GGNCC	3 cut(s)	235, 327, 473
AsuC2I	CCSGG	4 cut(s)	233, 310, 326, 824
AsuII	TTCGAA	2 cut(s)	542, 677
AvaII	GGWCC	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	722
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	2 cut(s)	28, 722
BbvI	GCAGC	3 cut(s)	299, 302, 793
BccI	CCATC	2 cut(s)	653, 782
BceAI	ACGGC	4 cut(s)	85, 280, 295, 376
BcnI	CCSGG	4 cut(s)	233, 310, 326, 824
BcoDI	GTCTC	4 cut(s)	72, 97, 326, 414
BfoI	RGCGCY	2 cut(s)	285, 296
BisI	GCNGC	8 cut(s)	102, 105, 147, 186, 285, 288, 291, 807
BlsI	GCNGC	8 cut(s)	103, 106, 148, 187, 286, 289, 292, 808
Bme1390I	CCNGG	4 cut(s)	233, 310, 326, 824
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	235, 327, 473
BmiI	GGNNCC	3 cut(s)	283, 318, 474
BmrFI	CCNGG	4 cut(s)	233, 310, 326, 824
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	746
Bpu14I	TTCGAA	2 cut(s)	542, 677
BpuMI	CCSGG	4 cut(s)	233, 310, 326, 824
BsaBI	GATNNNNATC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bse3DI	GCAATG	2 cut(s)	54, 838
Bse8I	GATNNNNATC	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	3 cut(s)	224, 664, 673
BseJI	GATNNNNATC	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	54, 838
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	3 cut(s)	299, 302, 793
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	4 cut(s)	149, 236, 329, 341
BshNI	GGYRCC	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	28, 722
BsiSI	CCGG	4 cut(s)	233, 309, 325, 823
BslFI	GGGAC	1 cut(s)	486
BsmAI	GTCTC	4 cut(s)	72, 97, 326, 414
BsmBI	CGTCTC	3 cut(s)	97, 326, 414
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	4 cut(s)	149, 236, 329, 341
Bsp119I	TTCGAA	2 cut(s)	542, 677
Bsp1286I	GDGCHC	2 cut(s)	28, 722
Bsp143I	GATC	4 cut(s)	195, 316, 378, 383
BspANI	GGCC	4 cut(s)	149, 236, 329, 341
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	283, 318, 474
BspPI	GGATC	3 cut(s)	311, 324, 391
BspT104I	TTCGAA	2 cut(s)	542, 677
BspT107I	GGYRCC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	585
BsrDI	GCAATG	2 cut(s)	54, 838
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	195, 316, 378, 383
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	181, 539
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	282
BstBI	TTCGAA	2 cut(s)	542, 677
BstDEI	CTNAG	2 cut(s)	447, 843
BstF5I	GGATG	3 cut(s)	224, 664, 673
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	2 cut(s)	285, 296
BstHHI	GCGC	3 cut(s)	190, 284, 295
BstKTI	GATC	4 cut(s)	198, 319, 381, 386
BstMAI	GTCTC	4 cut(s)	72, 97, 326, 414
BstMBI	GATC	4 cut(s)	195, 316, 378, 383
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSCI	CCNGG	4 cut(s)	231, 308, 324, 822
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	299, 302, 793
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	2 cut(s)	316, 383
BstYI	RGATCY	2 cut(s)	316, 383
BsuRI	GGCC	4 cut(s)	149, 236, 329, 341
BtsCI	GGATG	3 cut(s)	224, 664, 673
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	371
CfoI	GCGC	3 cut(s)	190, 284, 295
Cfr13I	GGNCC	3 cut(s)	235, 327, 473
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
DdeI	CTNAG	2 cut(s)	447, 843
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	4 cut(s)	197, 318, 380, 385
DpnII	GATC	4 cut(s)	195, 316, 378, 383
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	2 cut(s)	68, 217
Ecl136II	GAGCTC	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	720
EcoICRI	GAGCTC	1 cut(s)	720
EcoRI	GAATTC	2 cut(s)	797, 838
EcoRV	GATATC	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	722
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
Esp3I	CGTCTC	3 cut(s)	97, 326, 414
FaqI	GGGAC	1 cut(s)	486
FauI	CCCGC	2 cut(s)	578, 898
Fnu4HI	GCNGC	8 cut(s)	102, 105, 147, 186, 285, 288, 291, 807
FokI	GGATG	3 cut(s)	211, 671, 680
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	8 cut(s)	102, 105, 147, 186, 285, 288, 291, 807
GlaI	GCGC	3 cut(s)	189, 283, 294
GluI	GCNGC	8 cut(s)	102, 105, 147, 186, 285, 288, 291, 807
HaeII	RGCGCY	2 cut(s)	285, 296
HaeIII	GGCC	4 cut(s)	149, 236, 329, 341
HapII	CCGG	4 cut(s)	233, 309, 325, 823
HhaI	GCGC	3 cut(s)	190, 284, 295
Hin1I	GRCGYC	1 cut(s)	282
Hin6I	GCGC	3 cut(s)	188, 282, 293
HinP1I	GCGC	3 cut(s)	188, 282, 293
HincII	GTYRAC	2 cut(s)	214, 300
HindII	GTYRAC	2 cut(s)	214, 300
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	7 cut(s)	219, 433, 544, 551, 614, 634, 872
HpaI	GTTAAC	2 cut(s)	214, 300
HpaII	CCGG	4 cut(s)	233, 309, 325, 823
Hpy166II	GTNNAC	4 cut(s)	214, 300, 881, 889
Hpy188I	TCNGA	6 cut(s)	77, 154, 195, 316, 383, 639
Hpy188III	TCNNGA	3 cut(s)	437, 532, 548
Hpy8I	GTNNAC	4 cut(s)	214, 300, 881, 889
Hpy99I	CGWCG	9 cut(s)	62, 65, 68, 71, 101, 158, 161, 185, 212
HpyAV	CCTTC	4 cut(s)	118, 331, 338, 749
HpyCH4III	ACNGT	2 cut(s)	181, 539
HpyCH4IV	ACGT	2 cut(s)	270, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	447, 843
HpySE526I	ACGT	2 cut(s)	270, 302
Hsp92I	GRCGYC	1 cut(s)	282
HspAI	GCGC	3 cut(s)	188, 282, 293
KasI	GGCGCC	1 cut(s)	281
KspAI	GTTAAC	2 cut(s)	214, 300
Kzo9I	GATC	4 cut(s)	195, 316, 378, 383
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	3 cut(s)	299, 302, 793
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	2 cut(s)	270, 302
MaeIII	GTNAC	2 cut(s)	175, 271
MalI	GATC	4 cut(s)	197, 318, 380, 385
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	4 cut(s)	195, 316, 378, 383
MboII	GAAGA	6 cut(s)	20, 46, 382, 422, 751, 764
MflI	RGATCY	2 cut(s)	316, 383
MhlI	GDGCHC	2 cut(s)	28, 722
MluCI	AATT	8 cut(s)	478, 520, 592, 689, 724, 797, 838, 855
Mly113I	GGCGCC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	177, 294
MseI	TTAA	2 cut(s)	213, 299
MspI	CCGG	4 cut(s)	233, 309, 325, 823
MspR9I	CCNGG	4 cut(s)	233, 310, 326, 824
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	290
NarI	GGCGCC	1 cut(s)	282
NciI	CCSGG	4 cut(s)	233, 310, 326, 824
NdeII	GATC	4 cut(s)	195, 316, 378, 383
NlaIV	GGNNCC	3 cut(s)	283, 318, 474
NmeAIII	GCCGAG	1 cut(s)	355
NspV	TTCGAA	2 cut(s)	542, 677
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 165
PfeI	GAWTC	7 cut(s)	219, 433, 544, 551, 614, 634, 872
PkrI	GCNGC	8 cut(s)	103, 106, 148, 187, 286, 289, 292, 808
Ple19I	CGATCG	1 cut(s)	381
PluTI	GGCGCC	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	722
PspN4I	GGNNCC	3 cut(s)	283, 318, 474
PspPI	GGNCC	3 cut(s)	235, 327, 473
PsuI	RGATCY	2 cut(s)	316, 383
PvuI	CGATCG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	722
SaqAI	TTAA	2 cut(s)	213, 299
SatI	GCNGC	8 cut(s)	102, 105, 147, 186, 285, 288, 291, 807
Sau3AI	GATC	4 cut(s)	195, 316, 378, 383
Sau96I	GGNCC	3 cut(s)	235, 327, 473
ScrFI	CCNGG	4 cut(s)	233, 310, 326, 824
SduI	GDGCHC	2 cut(s)	28, 722
SetI	ASST	8 cut(s)	131, 273, 305, 602, 624, 657, 722, 808
SfaNI	GCATC	1 cut(s)	233
SfoI	GGCGCC	1 cut(s)	283
SfuI	TTCGAA	2 cut(s)	542, 677
SinI	GGWCC	1 cut(s)	473
Sse9I	AATT	8 cut(s)	478, 520, 592, 689, 724, 797, 838, 855
SspDI	GGCGCC	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	722
StyD4I	CCNGG	4 cut(s)	231, 308, 324, 822
TaaI	ACNGT	2 cut(s)	181, 539
TaiI	ACGT	2 cut(s)	273, 305
TaqI	TCGA	4 cut(s)	518, 542, 602, 677
TaqII	GACCGA	1 cut(s)	490
TasI	AATT	8 cut(s)	478, 520, 592, 689, 724, 797, 838, 855
TauI	GCSGC	5 cut(s)	104, 107, 149, 188, 287
TfiI	GAWTC	7 cut(s)	219, 433, 544, 551, 614, 634, 872
Tru1I	TTAA	2 cut(s)	213, 299
Tru9I	TTAA	2 cut(s)	213, 299
TscAI	CASTG	1 cut(s)	371
TseI	GCWGC	3 cut(s)	287, 290, 806
TspGWI	ACGGA	2 cut(s)	85, 231
TspRI	CASTG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	8 cut(s)	478, 520, 592, 689, 724, 797, 838, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.