Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004748

Physical Location & Seq

Genomic Coordinates Reverse (-)

22121675 .. 22122540

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTACAGATGGACAAAGCATATTGCTTCCCTAATTCCCTTGCTCATCAGTCAATCCCTGCTCATCTCCTCCAGTCCTCCTCCGTCGATCGCAGCTTTGCCGTTGTCGTTGTTTGGGGAAGAGGAGGAGGAGAGAGACAAGCAGGCGAGTCAGGATTTGACCGGGTTGACTGAGAATGAGGGATTTGGGAGAAAGGAGTCGAATTTGAATGTGAAGAAGGGTGGGATTGATGATTTGATATCCAATTTGTATGTTCAGAACGGGTCGGGTCCGAATTCGGGTTCGGGTGGTGGTTTGATTGGGAGGAGTAATGGGAATGGTGTTGATTTGAAATTTGAGGGTGTAGATATAAATGGGAGCTCGAATTCGAGTGGGGCAAAGTTGAATGAGGAAGAAGGGAATGGGGATTTTGATGAGGAGGATGATGATGGATGGGAATTCAAGGCAGCAAAGCCAGAGCAAAGGGGTGGAAATGAGAATTCAAAGGAACAAGGGGTTGTGGAAGTAGTAGAGGTGAGAGCAGAATCAAGTACATTCGTTAACGGAGGAATCCTAGTGGGTATTGTTTATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.28

Weight (kDa)

4.38

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54920 AT1G54920 AT1G54920 AT1G54920
fragaria_vesca	FvH4_3g17890 FvH4_3g29010 FvH4_5g29781 FvH4_6g05680 FvH4_6g05680 FvH4_6g05680
malus_domestica	MD04G1206500.v1.1 MD12G1220300.v1.1
prunus_persica	Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1 Prupe.6G327100_v2.0.a1
pyrus_communis	pycom04g18260 pycom07g09630 pycom12g20620
rosa_chinensis	RchiOBHm_Chr3g0454571
rosa_laevigata	RLG00000025433
rosa_multiflora	Rmu_co8510799.1_g000001 Rmu_sc0043068.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424960
rosa_rugosa	Rorug03G0000200 Rorug03G0000300
rosa_samantha	Rh3AG060000 Rh3BG062100 Rh3CG060900 Rh3DG061700
rosa_wichuraiana	Rw3G004660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	6 cut(s)	202, 274, 332, 364, 437, 478
AfaI	GTAC	2 cut(s)	5, 532
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	208, 331, 385, 442, 483
AluBI	AGCT	2 cut(s)	95, 360
AluI	AGCT	2 cut(s)	95, 360
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	92, 446
ApoI	RAATTY	6 cut(s)	202, 274, 332, 364, 437, 478
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	104, 458
BccI	CCATC	3 cut(s)	3, 422, 426
BceAI	ACGGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	554
BisI	GCNGC	2 cut(s)	93, 447
BlsI	GCNGC	2 cut(s)	94, 448
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	427, 437
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	7 cut(s)	58, 69, 137, 140, 143, 319, 431
BseXI	GCAGC	2 cut(s)	104, 458
Bsh1285I	CGRYCG	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	427, 437
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	104, 458
BtsCI	GGATG	2 cut(s)	427, 437
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	4, 531
CviJI	RGCY	3 cut(s)	95, 360, 454
CviKI_1	RGCY	3 cut(s)	95, 360, 454
CviQI	GTAC	2 cut(s)	4, 531
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	360
EcoRI	GAATTC	4 cut(s)	274, 364, 437, 478
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	362
FaiI	YATR	3 cut(s)	21, 252, 350
Fnu4HI	GCNGC	2 cut(s)	93, 447
FokI	GGATG	2 cut(s)	434, 444
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	93, 447
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	2 cut(s)	93, 447
GsuI	CTGGAG	1 cut(s)	55
HapII	CCGG	1 cut(s)	162
HincII	GTYRAC	2 cut(s)	168, 541
HindII	GTYRAC	2 cut(s)	168, 541
HinfI	GANTC	4 cut(s)	148, 197, 524, 549
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	168, 541
Hpy188I	TCNGA	2 cut(s)	258, 273
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	168, 541
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	211, 389
HpyF3I	CTNAG	1 cut(s)	171
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	6 cut(s)	71, 85, 128, 137, 175, 468
Lsp1109I	GCAGC	2 cut(s)	104, 458
MaeI	CTAG	1 cut(s)	554
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	3 cut(s)	131, 226, 404
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	8 cut(s)	33, 202, 244, 274, 332, 364, 437, 478
MlyI	GAGTC	2 cut(s)	157, 206
MseI	TTAA	1 cut(s)	540
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	163
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	524, 549
PkrI	GCNGC	2 cut(s)	94, 448
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	156, 205
PpsI	GAGTC	2 cut(s)	156, 205
Psp124BI	GAGCTC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	5, 532
RsaNI	GTAC	2 cut(s)	4, 531
SacI	GAGCTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	2 cut(s)	93, 447
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	2 cut(s)	157, 206
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	3 cut(s)	97, 362, 516
SinI	GGWCC	1 cut(s)	269
Sse9I	AATT	8 cut(s)	33, 202, 244, 274, 332, 364, 437, 478
SspMI	CTAG	1 cut(s)	554
SstI	GAGCTC	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	161
TaqI	TCGA	4 cut(s)	86, 200, 362, 368
TasI	AATT	8 cut(s)	33, 202, 244, 274, 332, 364, 437, 478
TatI	WGTACW	2 cut(s)	3, 530
TfiI	GAWTC	2 cut(s)	524, 549
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TseI	GCWGC	2 cut(s)	92, 446
TspGWI	ACGGA	2 cut(s)	72, 558
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	6 cut(s)	202, 274, 332, 364, 437, 478
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.