Rw3G004660

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004748
Physical Location & Seq
Forward (+)
3985362 .. 3991186
5825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004660.1

Sequence Viewer

Length: 2901 bp
ATGGCGGACGACGACGACGACGGCTTCGGAGACTTCACTTTCGTCTCCACCGCCGCCGCCTTCAATCCCAATCCCACCACCACCACCCAACGACAATCGGCCGCCTCCGACGACGATTGGGGCGATTTCGTAACCGTCGCCGCGCCTCCGATCAAAACCCCCGTCGTTAACGGATTCGCATCCGCCCCGGCCCAAACACCGCCCGACCCGTTCGGGTTTTTCAACGTAACTAACGGCGCCGCAGCAGCGCCGTTAACGTCAGCCGGGTCGGATCCAATCCGGGCCGAGACGGTCAGTAAGACGAGGCAGTGGAAGAAGCCGATGGGAGCTTTGCCGTTGTCGTTGTTTGGGGAAGAGGAGAGAGACGAGCAGGTGAATCAGGATTTGACTGAGAATGAGGGATTTGGGAAAAAGGGATCGAATCTGAATGGGAGTAGCGGTGGGATTGATGATTTGATATCGAATTTGTATGTCCAGAACGGTTCGAATCGGGATTCTGGTTCGGGTGGTATTGATTTTAGCAAGAGCGGGTTGAATTTGAGGTCGAATGGGGTGGATTCGAAGCTTGGTGGTTTGATTCCGAGCCAAAATGGGAAGCTGGATGGTGGTGATTTGAGTTCGAATGGTTTGAAATTTTTTGAGGGTGTAGATTTGAATGGGAGCTCAAATTCAAGTGTGTTGAAGATGAATGTGGAAGAAGGGAATGGGGATTTTGACGAGGATGATGATGATGGTTGGGAATTCAAAGCTGCTGAACCAGAGAACCGGGTTGGCAATGAGAATTCTAAGGAACGAGGAATTTTGGAAGTAGCAGAGTCAAAAGCAGAATCAAGTACACTTGTAAACGGGGGAATACAGGAACATACTGGAGGAACTGGATTTTCTGGGGGGTTTGGTATTCATGAGTTTAATAATGTGTCTGTTGCATCTAATGGAACTTCTCATGGAAATGGTGAATGGGGTTTTTCATTTGACTTCAAGCCACGCCCTGTAATTCAAGATAATTTCTTCTCGGAAACATACTCGAAAAGCAAGCAGAGCAATGCTGCAACTGTATCCAATTCTTCCGGAGTTGATGATAATGTGTGGGGATTCAAGGATGCATTTTCGGAAACTGGATCAGAACATAAGTCGGAAGATGCTAAGGCTGCTACTCCTGCTGGTGTAGAATTGCATACATTAGATGGTGCTGGTGCTGGTCCTCGTAATGATTTTTTTGCTGGGTCGGATTGGATTTCTCACCAGTCTTCTGAAAGTAGCTTTGCATTTCCTTTCATCCCAAATTCTGGCAATAAAGATGGTGTAATCTCAGATTCCTATTCCAGTGGCAAGAAAGATGACATAGTAACAGGATTGAGCTTTCCTCCAGATACTAACCATATTGAGTCAGAAGACAACTTTTGGGAATTTAAGGATGCATTTTCAGAATCTGGATCTAAGCTTGAGGGGGAGTTGGTGGTTGCCAGTAATTCTCCTACCAATATAAAACCATCAGCAATGGGTGGAGAAAATCAGCACAGTGAGGTAACATTGAATAATCATCGGCAAGCTTTACCCTTGTCCATTTTTGGAGGCGAAGAACTAGAGACTGATGATTCCTCAGTCCATCAAGATATTTCTACTCAGACAGCTGCTTCCCAGCAGATAAATACTGCCAAAAGCCCTGCTACCAATGTATCCATCACTGATCTCATATCAAGCTTATACAGTCAAGTGGAACAGAACACTTCTAAACTTCATACGCCAAAAGAAACTGAAAGTACTATGCATCCTGTGACGACAGTGTTAGACTCTGATTTTGTTGGTGATGATGCTGATGATGACTCCTGGAAGTTTAAGGATGCTGTTTCAAAAGATCGAGACCCAACTTCTATTGCCAATCTTGAAGATTCACTTAAACATTCTTGTACTAAAATCCAGCTGGATGACTTTGTGGAATTGTATTGCAAGTTGAAGAATGAATCATATTTTCTTGCACTCTACCATCTTGACCAGAAAAAGAAAGCTCAAGGTAGTGCTTCTCTTTCTGGTGAGGATGCAACAGAGGCTCTGGATAAGGAAATCCAGAAACTTTATAATGAACTGCCTCAAGACAACATGAGATTAGATCAGTTCCAGTCAGGGAATCCTTCGCCAAGAAATGAATGCCTTAACGAACTTCATAAAGCTCTGCAGGAACTGAAGTTCCAAGTCCTTGAGTCAGAATATCAATTGTCACAAAGATTGTCCTTGGCAGAGAAGGATTTGATATCGGCAATTGAACTTCTAAGACATGCAGCAGCCATATTAAGGATTCTGAGACTCAGATCAGCTGAGGAGCAATCTAGGTACATTGCTGCATGGTCTCAAATGGTCTCCATATGTGCTGAAGAGCTGAAACATGGCTCTTTAATTTGGATGCAATTATTAGAAAAGAATGTTCAGAAGCAGATGCTATCTGAACCTCGAGGCAAGCAGTATATCATTGCTCTGGGAGAAATTTACCGGGTAGTTTTAGTTCTTGGAGCCTCAATTAAACTATACAGCCCTTGGATTCTATTACAGTCCTCAGATTGTTCTAGCTTGTTTGGTCTTCTAAACGAGTGTTCTACTCTATGGTCAAGTTCAGGACTTGATGAAGCTCTCAGAAGTATTTCAGATGTTGATGATCTCAAATATGATGGAAATGTTAATGCATTATTGGATTCCTTAACGTCTATTAATCAGCTCGACACATTTTCACTCCAAAACCATTTTTTGAGTGGACAACAAGCTATATGTTCGCTGTCACTTTTAACTGCAGGAGCTGTGCCAGGTATTAAAATGGTGGCGTGGAATGAGGTACACTATTTATTGACACTCGCAAACTTGTGGATAAATTTAATTGGTGGTGAACCCCACGGTTGCCGCACTTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

966

Amino Acids

104.54

Weight (kDa)

4.55

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYNRG_C PF25999 771 - 958 2e-59 Synergin gamma, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2076
AarI CACCTGC 1 cut(s) 361
AbsI CCTCGAGG 1 cut(s) 2445
Acc36I ACCTGC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 1286
AccBSI CCGCTC 1 cut(s) 528
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 1067
AclWI GGATC 5 cut(s) 266, 279, 424, 1126, 1441
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 3 cut(s) 2201, 2388, 2877
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 5 cut(s) 835, 1762, 1909, 2330, 2823
AfiI CCNNNNNNNGG 2 cut(s) 1286, 2289
AjnI CCWGG 2 cut(s) 1826, 2791
AloI GAACNNNNNNTCC 4 cut(s) 2168, 2169, 2200, 2201
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 9 cut(s) 24, 49, 281, 357, 1580, 1854, 2293, 2349, 2359
AlwI GGATC 5 cut(s) 266, 279, 424, 1126, 1441
AlwNI CAGNNNCTG 3 cut(s) 1430, 2179, 2786
Ama87I CYCGRG 1 cut(s) 2445
Aor13HI TCCGGA 1 cut(s) 1067
AoxI GGCC 3 cut(s) 99, 189, 282
ApeKI GCWGC 9 cut(s) 242, 245, 749, 1046, 1148, 1631, 2276, 2279, 2336
ArsI GACNNNNNNTTYG 8 cut(s) 8, 23, 40, 55, 147, 179, 1781, 1813
AseI ATTAAT 1 cut(s) 2700
Asp700I GAANNNNTTC 1 cut(s) 2632
AspLEI GCGC 3 cut(s) 145, 239, 250
AspS9I GGNCC 3 cut(s) 190, 282, 1199
AsuC2I CCSGG 5 cut(s) 188, 265, 281, 767, 2486
AsuHPI GGTGA 7 cut(s) 385, 620, 965, 1232, 1817, 2042, 2882
AsuII TTCGAA 3 cut(s) 485, 560, 620
AvaI CYCGRG 1 cut(s) 2445
AvaII GGWCC 1 cut(s) 1199
BaeI ACNNNNGTAYC 2 cut(s) 1659, 1692
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 665
BbsI GAAGAC 3 cut(s) 1239, 1398, 2564
Bbv12I GWGCWC 1 cut(s) 665
BbvCI CCTCAGC 1 cut(s) 2313
BbvI GCAGC 9 cut(s) 254, 257, 736, 1033, 1135, 1618, 2288, 2291, 2323
BceAI ACGGC 4 cut(s) 37, 235, 250, 319
BciT130I CCWGG 2 cut(s) 1828, 2793
BciVI GTATCC 2 cut(s) 1066, 1687
BcnI CCSGG 5 cut(s) 188, 265, 281, 767, 2486
BcoDI GTCTC 9 cut(s) 24, 49, 281, 357, 1580, 1854, 2293, 2349, 2359
BfaI CTAG 3 cut(s) 1583, 2325, 2559
BfmI CTRYAG 2 cut(s) 2171, 2778
BfoI RGCGCY 2 cut(s) 240, 251
BfuAI ACCTGC 1 cut(s) 361
BfuI GTATCC 2 cut(s) 1066, 1687
BmcAI AGTACT 1 cut(s) 1762
Bme1390I CCNGG 7 cut(s) 188, 265, 281, 767, 1828, 2486, 2793
Bme18I GGWCC 1 cut(s) 1199
BmeT110I CYCGRG 1 cut(s) 2445
BmgT120I GGNCC 3 cut(s) 190, 282, 1199
BmiI GGNNCC 3 cut(s) 238, 273, 2506
BmrFI CCNGG 7 cut(s) 188, 265, 281, 767, 1828, 2486, 2793
BpiI GAAGAC 3 cut(s) 1239, 1398, 2564
BplI GAGNNNNNCTC 2 cut(s) 1348, 1380
BpmI CTGGAG 2 cut(s) 888, 1350
Bpu10I CCTNAGC 2 cut(s) 1143, 2313
Bpu14I TTCGAA 3 cut(s) 485, 560, 620
BpuEI CTTGAG 4 cut(s) 1463, 1992, 2073, 2216
BpuMI CCSGG 5 cut(s) 188, 265, 281, 767, 2486
BsaBI GATNNNNATC 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 3 cut(s) 1854, 2349, 2359
BsaJI CCNNGG 4 cut(s) 186, 2229, 2528, 2878
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 1286, 2289
Bse1I ACTGG 7 cut(s) 871, 880, 1120, 1243, 1323, 1464, 2116
Bse3DI GCAATG 5 cut(s) 781, 1048, 1503, 2331, 2463
Bse8I GATNNNNATC 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 1067
BseBI CCWGG 2 cut(s) 1828, 2793
BseDI CCNNGG 4 cut(s) 186, 2229, 2528, 2878
BseJI GATNNNNATC 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 1286, 2289
BseMI GCAATG 5 cut(s) 781, 1048, 1503, 2331, 2463
BseMII CTCAG 9 cut(s) 381, 1323, 1614, 1637, 2288, 2304, 2317, 2562, 2638
BseNI ACTGG 7 cut(s) 871, 880, 1120, 1243, 1323, 1464, 2116
BseRI GAGGAG 2 cut(s) 371, 2330
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 9 cut(s) 254, 257, 736, 1033, 1135, 1618, 2288, 2291, 2323
BseYI CCCAGC 2 cut(s) 1220, 1638
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 101, 191, 284
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 2445
BsiSI CCGG 6 cut(s) 188, 264, 280, 766, 1068, 2485
BslI CCNNNNNNNGG 2 cut(s) 1286, 2289
BsmAI GTCTC 9 cut(s) 24, 49, 281, 357, 1580, 1854, 2293, 2349, 2359
BsmBI CGTCTC 3 cut(s) 49, 281, 357
BsmI GAATGC 1 cut(s) 2150
BsnI GGCC 3 cut(s) 101, 191, 284
Bso31I GGTCTC 3 cut(s) 1854, 2349, 2359
BsoBI CYCGRG 1 cut(s) 2445
Bsp119I TTCGAA 3 cut(s) 485, 560, 620
Bsp1286I GDGCHC 1 cut(s) 665
Bsp13I TCCGGA 1 cut(s) 1067
BspANI GGCC 3 cut(s) 101, 191, 284
BspCNI CTCAG 9 cut(s) 382, 1322, 1613, 1636, 2289, 2305, 2316, 2561, 2637
BspEI TCCGGA 1 cut(s) 1067
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 3 cut(s) 238, 273, 2506
BspMAI CTGCAG 2 cut(s) 2175, 2782
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 5 cut(s) 266, 279, 424, 1126, 1441
BspQI GCTCTTC 1 cut(s) 2364
BspT104I TTCGAA 3 cut(s) 485, 560, 620
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 3 cut(s) 1854, 2349, 2359
BsrBI CCGCTC 1 cut(s) 528
BsrDI GCAATG 5 cut(s) 781, 1048, 1503, 2331, 2463
BsrI ACTGG 7 cut(s) 871, 880, 1120, 1243, 1323, 1464, 2116
BssECI CCNNGG 4 cut(s) 186, 2229, 2528, 2878
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 2229, 2528
Bst2UI CCWGG 2 cut(s) 1828, 2793
Bst4CI ACNGT 9 cut(s) 136, 292, 482, 1054, 1520, 1709, 1783, 2544, 2882
Bst6I CTCTTC 2 cut(s) 348, 2364
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 3 cut(s) 485, 560, 620
BstC8I GCNNGC 3 cut(s) 1034, 1548, 2453
BstDSI CCRYGG 1 cut(s) 2878
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 240, 251
BstHHI GCGC 3 cut(s) 145, 239, 250
BstMAI GTCTC 9 cut(s) 24, 49, 281, 357, 1580, 1854, 2293, 2349, 2359
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 5 cut(s) 245, 1038, 1148, 1157, 2045
BstNI CCWGG 2 cut(s) 1828, 2793
BstNSI RCATGY 1 cut(s) 2276
BstSCI CCNGG 7 cut(s) 186, 263, 279, 765, 1826, 2484, 2791
BstSFI CTRYAG 2 cut(s) 2171, 2778
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 9 cut(s) 254, 257, 736, 1033, 1135, 1618, 2288, 2291, 2323
BstV2I GAAGAC 3 cut(s) 1239, 1398, 2564
BstX2I RGATCY 2 cut(s) 271, 1433
BstYI RGATCY 2 cut(s) 271, 1433
BstZI CGGCCG 1 cut(s) 99
BsuI GTATCC 2 cut(s) 1066, 1687
BsuRI GGCC 3 cut(s) 101, 191, 284
BtgI CCRYGG 1 cut(s) 2878
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 5 cut(s) 314, 1330, 1525, 1683, 1788
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 1034, 1548, 2453
CaiI CAGNNNCTG 3 cut(s) 1430, 2179, 2786
CciI TCATGA 1 cut(s) 901
CfoI GCGC 3 cut(s) 145, 239, 250
Cfr13I GGNCC 3 cut(s) 190, 282, 1199
Csp6I GTAC 5 cut(s) 834, 1761, 1908, 2329, 2822
CviAII CATG 6 cut(s) 902, 944, 2098, 2273, 2340, 2381
CviQI GTAC 5 cut(s) 834, 1761, 1908, 2329, 2822
DinI GGCGCC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 348, 2364
EarI CTCTTC 2 cut(s) 348, 2364
EciI GGCGGA 2 cut(s) 20, 172
Ecl136II GAGCTC 1 cut(s) 663
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 2229, 2528
Eco24I GRGCYC 1 cut(s) 665
Eco31I GGTCTC 3 cut(s) 1854, 2349, 2359
Eco32I GATATC 2 cut(s) 459, 2250
Eco47I GGWCC 1 cut(s) 1199
Eco52I CGGCCG 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 3 cut(s) 2201, 2388, 2877
Eco88I CYCGRG 1 cut(s) 2445
EcoICRI GAGCTC 1 cut(s) 663
EcoRI GAATTC 2 cut(s) 740, 781
EcoRII CCWGG 2 cut(s) 1826, 2791
EcoRV GATATC 2 cut(s) 459, 2250
EcoT14I CCWWGG 2 cut(s) 2229, 2528
EcoT22I ATGCAT 4 cut(s) 1105, 1420, 1770, 2677
EcoT38I GRGCYC 1 cut(s) 665
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 2229, 2528
Esp3I CGTCTC 3 cut(s) 49, 281, 357
FaeI CATG 6 cut(s) 905, 947, 2101, 2276, 2343, 2384
FalI AAGNNNNNCTT 2 cut(s) 1878, 1910
FatI CATG 6 cut(s) 901, 943, 2097, 2272, 2339, 2380
FauI CCCGC 1 cut(s) 521
FauNDI CATATG 1 cut(s) 2360
FriOI GRGCYC 1 cut(s) 665
FspBI CTAG 3 cut(s) 1583, 2325, 2559
GlaI GCGC 3 cut(s) 144, 238, 249
GsaI CCCAGC 2 cut(s) 1224, 1642
GsuI CTGGAG 2 cut(s) 888, 1350
HaeII RGCGCY 2 cut(s) 240, 251
HaeIII GGCC 3 cut(s) 101, 191, 284
HapII CCGG 6 cut(s) 188, 264, 280, 766, 1068, 2485
HhaI GCGC 3 cut(s) 145, 239, 250
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 6 cut(s) 905, 947, 2101, 2276, 2343, 2384
Hin6I GCGC 3 cut(s) 143, 237, 248
HinP1I GCGC 3 cut(s) 143, 237, 248
HincII GTYRAC 2 cut(s) 169, 255
HindII GTYRAC 2 cut(s) 169, 255
HindIII AAGCTT 4 cut(s) 563, 1439, 1548, 1699
HpaI GTTAAC 2 cut(s) 169, 255
HpaII CCGG 6 cut(s) 188, 264, 280, 766, 1068, 2485
HphI GGTGA 7 cut(s) 385, 620, 965, 1232, 1817, 2042, 2882
Hpy166II GTNNAC 7 cut(s) 169, 255, 836, 844, 2744, 2824, 2873
Hpy8I GTNNAC 7 cut(s) 169, 255, 836, 844, 2744, 2824, 2873
Hpy99I CGWCG 8 cut(s) 14, 17, 20, 23, 113, 116, 140, 167
HpyAV CCTTC 4 cut(s) 70, 692, 2139, 2233
HpyCH4III ACNGT 9 cut(s) 136, 292, 482, 1054, 1520, 1709, 1783, 2544, 2882
HpyCH4IV ACGT 3 cut(s) 225, 257, 2693
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 1038, 1148, 1157, 2045
HpySE526I ACGT 3 cut(s) 225, 257, 2693
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 6 cut(s) 905, 947, 2101, 2276, 2343, 2384
HspAI GCGC 3 cut(s) 143, 237, 248
KasI GGCGCC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 1067
KspAI GTTAAC 2 cut(s) 169, 255
LguI GCTCTTC 1 cut(s) 2364
LmnI GCTCC 5 cut(s) 326, 660, 2317, 2504, 2783
Lsp1109I GCAGC 9 cut(s) 254, 257, 736, 1033, 1135, 1618, 2288, 2291, 2323
MaeI CTAG 3 cut(s) 1583, 2325, 2559
MaeII ACGT 3 cut(s) 225, 257, 2693
MaeIII GTNAC 7 cut(s) 130, 226, 1345, 1525, 1774, 2214, 2766
MbiI CCGCTC 1 cut(s) 528
MfeI CAATTG 2 cut(s) 2210, 2256
MflI RGATCY 2 cut(s) 271, 1433
MhlI GDGCHC 1 cut(s) 665
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 6 cut(s) 824, 1394, 1784, 1817, 2207, 2295
MmeI TCCRAC 4 cut(s) 132, 249, 1113, 1206
Mph1103I ATGCAT 4 cut(s) 1105, 1420, 1770, 2677
MroI TCCGGA 1 cut(s) 1067
MroXI GAANNNNTTC 1 cut(s) 2632
MslI CAYNNNNRTG 1 cut(s) 948
MspA1I CMGCKG 3 cut(s) 1631, 1921, 2312
MspI CCGG 6 cut(s) 188, 264, 280, 766, 1068, 2485
MspR9I CCNGG 7 cut(s) 188, 265, 281, 767, 1828, 2486, 2793
MunI CAATTG 2 cut(s) 2210, 2256
Mva1269I GAATGC 1 cut(s) 2150
MvaI CCWGG 2 cut(s) 1828, 2793
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 5 cut(s) 245, 1038, 1148, 1157, 2045
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 5 cut(s) 188, 265, 281, 767, 2486
NdeI CATATG 1 cut(s) 2360
NlaIII CATG 6 cut(s) 905, 947, 2101, 2276, 2343, 2384
NlaIV GGNNCC 3 cut(s) 238, 273, 2506
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 3 cut(s) 1774, 2214, 2766
NsiI ATGCAT 4 cut(s) 1105, 1420, 1770, 2677
NspI RCATGY 1 cut(s) 2276
NspV TTCGAA 3 cut(s) 485, 560, 620
PaeR7I CTCGAG 1 cut(s) 2445
PagI TCATGA 1 cut(s) 901
PaqCI CACCTGC 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 2364
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 120
PctI GAATGC 1 cut(s) 2150
PdmI GAANNNNTTC 1 cut(s) 2632
PflMI CCANNNNNTGG 1 cut(s) 1286
PfoI TCCNGGA 1 cut(s) 1826
PleI GAGTC 6 cut(s) 823, 1393, 1784, 1817, 2206, 2295
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 6 cut(s) 823, 1393, 1784, 1817, 2206, 2295
PshBI ATTAAT 1 cut(s) 2700
PsiI TTATAA 1 cut(s) 2076
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 1826, 2791
PspFI CCCAGC 2 cut(s) 1220, 1638
PspGI CCWGG 2 cut(s) 1826, 2791
PspN4I GGNNCC 3 cut(s) 238, 273, 2506
PspPI GGNCC 3 cut(s) 190, 282, 1199
PspXI VCTCGAGB 1 cut(s) 2445
PsrI GAACNNNNNNTAC 2 cut(s) 2481, 2513
PstI CTGCAG 2 cut(s) 2175, 2782
PstNI CAGNNNCTG 3 cut(s) 1430, 2179, 2786
PsuI RGATCY 2 cut(s) 271, 1433
PvuII CAGCTG 3 cut(s) 1631, 1921, 2312
RsaI GTAC 5 cut(s) 835, 1762, 1909, 2330, 2823
RsaNI GTAC 5 cut(s) 834, 1761, 1908, 2329, 2822
RseI CAYNNNNRTG 1 cut(s) 948
SacI GAGCTC 1 cut(s) 665
SapI GCTCTTC 1 cut(s) 2364
Sau96I GGNCC 3 cut(s) 190, 282, 1199
ScaI AGTACT 1 cut(s) 1762
SchI GAGTC 6 cut(s) 824, 1394, 1784, 1817, 2207, 2295
ScrFI CCNGG 7 cut(s) 188, 265, 281, 767, 1828, 2486, 2793
SduI GDGCHC 1 cut(s) 665
SfcI CTRYAG 2 cut(s) 2171, 2778
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 2445
SfuI TTCGAA 3 cut(s) 485, 560, 620
SinI GGWCC 1 cut(s) 1199
SlaI CTCGAG 1 cut(s) 2445
SmiMI CAYNNNNRTG 1 cut(s) 948
SmlI CTYRAG 5 cut(s) 1442, 2007, 2088, 2195, 2445
SmoI CTYRAG 5 cut(s) 1442, 2007, 2088, 2195, 2445
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 3 cut(s) 1583, 2325, 2559
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 7 cut(s) 186, 263, 279, 765, 1826, 2484, 2791
StyI CCWWGG 2 cut(s) 2229, 2528
TaaI ACNGT 9 cut(s) 136, 292, 482, 1054, 1520, 1709, 1783, 2544, 2882
TaiI ACGT 3 cut(s) 228, 260, 2696
TatI WGTACW 3 cut(s) 833, 1760, 1907
TauI GCSGC 6 cut(s) 56, 59, 104, 143, 242, 2889
TscAI CASTG 5 cut(s) 314, 1330, 1525, 1690, 1788
TseFI GTSAC 3 cut(s) 1774, 2214, 2766
TseI GCWGC 9 cut(s) 242, 245, 749, 1046, 1148, 1631, 2276, 2279, 2336
Tsp45I GTSAC 3 cut(s) 1774, 2214, 2766
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 5 cut(s) 314, 1330, 1525, 1690, 1788
Van91I CCANNNNNTGG 1 cut(s) 1286
VpaK11BI GGWCC 1 cut(s) 1199
VspI ATTAAT 1 cut(s) 2700
XceI RCATGY 1 cut(s) 2276
XcmI CCANNNNNNNNNTGG 1 cut(s) 2738
XhoI CTCGAG 1 cut(s) 2445
XmnI GAANNNNTTC 1 cut(s) 2632
XspI CTAG 3 cut(s) 1583, 2325, 2559
ZrmI AGTACT 1 cut(s) 1762
Zsp2I ATGCAT 4 cut(s) 1105, 1420, 1770, 2677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.