Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003973

Physical Location & Seq

Genomic Coordinates Reverse (-)

29047084 .. 29048253

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G334400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGAGCCAATACTGATAATTCATTGGAGATTTTGTGTTTTTTGCAATTTATAGCTACATATGGATTGGTTTCTACCTTCGATGTAGATGAGACGGTAAAGCTTCTTGGGATGATTTCTCAGCATAAACAGGCTATAGAATTACATCAGACACTTGGTGTTGCAGATAAGATCCCTGATTTTATTCAGAATCTTATTGAAAGGAAGCAACTCATTGAGGCTATTAGATTTATCTGCACCTTCAACTTAATTGACAAGTTCCCGCCAGCACCACTCCTCAAAGAATACATGGAGGATGCATGGCAGTCTTTCTGGACAATTTGGCTGGCAAAAGAATCACTTGATGAAAAGAATAAGGTTGTAGACAAGCAAATAGCTGATCTAAGAGCTGTGATTCAATGCATCAAAGATTACAACCTCGAGTCTGAATACGCATCCAAGGACATTGAAATACAAATTGTTGAGCTTGAAAAGCTAAGGGGTACTTGGAGACATTCTGGGAGACCCTATGTCTTTGAACAAGAGCTGGAAAAGAGGAAGGAAAGTAGTAGCAGCACTTCTGACCCCAGATTTCAACCACCAGAGAAACGTCAAGCCATAGCAGCTGCTAGACCCTGTGCATTGCCAACTTTCACCCGTGGCTATCCGCAGTTAAGTTCGTCATCTCAGCTGTGGTATGGACATTCTGTGCAGTTTGACATGGCGGCCAACGACCAGGAAGCTGCTGGTGCTAACTTTGGTGCCATGCAGTTAAGTCTGTCATCTAGGCTGCATTCTGGACACCCTGAGCAGTTTGGTATGGCTGGCGGAGCTAGAATTGTAAAGTTGGAGGGGCCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

Frigida

Protein Analysis

281

Amino Acids

31.69

Weight (kDa)

5.61

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27220 AT5G27220 AT5G27220 AT5G27220
fragaria_vesca	FvH4_6g04390
malus_domestica	MD04G1214300.v1.1 MD04G1214400.v1.1 MD04G1214500.v1.1 MD12G1228900.v1.1 MD12G1229100.v1.1
prunus_persica	Prupe.6G334100_v2.0.a1 Prupe.6G334200_v2.0.a1 Prupe.6G334200_v2.0.a1 Prupe.6G334200_v2.0.a1 Prupe.6G334400_v2.0.a1 Prupe.6G334500_v2.0.a1
pyrus_communis	pycom04g18950 pycom12g21350 pycom12g21360
rosa_chinensis	RchiOBHm_Chr3g0453001
rosa_laevigata	RLG00000025551
rosa_multiflora	Rmu_co8146304.1_g000001 Rmu_co8342113.1_g000001 Rmu_sc0005888.1_g000003
rosa_roxburghii	Rroxscaffold_6G00430100
rosa_rugosa	Rorug02G0645100 Rorug02G0645200 Rorug02G0645300
rosa_samantha	Rh3AG047500 Rh3BG050000 Rh3CG048800 Rh3DG049600
rosa_wichuraiana	Rw3G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	4 cut(s)	263, 647, 704, 807
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	705
AdeI	CACNNNGTG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	484
AgsI	TTSAA	7 cut(s)	200, 244, 398, 449, 470, 518, 575
AhdI	GACNNNNNGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	86, 484, 496
AlwI	GGATC	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	705, 833
ApeKI	GCWGC	5 cut(s)	552, 602, 605, 722, 769
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	740
BarI	GAAGNNNNNNTAC	2 cut(s)	541, 573
BbvI	GCAGC	5 cut(s)	564, 592, 614, 709, 756
BciT130I	CCWGG	1 cut(s)	716
BcoDI	GTCTC	3 cut(s)	86, 484, 496
BfaI	CTAG	3 cut(s)	609, 765, 813
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	6 cut(s)	553, 603, 606, 705, 723, 770
BlsI	GCNGC	6 cut(s)	554, 604, 607, 706, 724, 771
Bme1390I	CCNGG	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	509
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	3 cut(s)	7, 742, 834
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	3 cut(s)	286, 411, 443
Bpu10I	CCTNAGC	2 cut(s)	476, 786
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	438, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse3DI	GCAATG	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	438, 637
BseGI	GGATG	3 cut(s)	117, 301, 434
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	3 cut(s)	134, 680, 777
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	5 cut(s)	564, 592, 614, 709, 756
BsgI	GTGCAG	2 cut(s)	220, 710
BshFI	GGCC	2 cut(s)	707, 835
BshNI	GGYRCC	1 cut(s)	740
BsiHKCI	CYCGRG	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	86, 484, 496
BsmBI	CGTCTC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	2 cut(s)	707, 835
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	171, 379
BspACI	CCGC	4 cut(s)	263, 647, 704, 807
BspANI	GGCC	2 cut(s)	707, 835
BspCNI	CTCAG	3 cut(s)	133, 679, 778
BspLI	GGNNCC	3 cut(s)	7, 742, 834
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	620
BssECI	CCNNGG	2 cut(s)	438, 637
BssMI	GATC	2 cut(s)	171, 379
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	267, 327, 805
BstDEI	CTNAG	5 cut(s)	120, 383, 476, 666, 786
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	3 cut(s)	117, 301, 434
BstKTI	GATC	2 cut(s)	174, 382
BstMAI	GTCTC	3 cut(s)	86, 484, 496
BstMBI	GATC	2 cut(s)	171, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	472, 602, 728, 809
BstNI	CCWGG	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	5 cut(s)	564, 592, 614, 709, 756
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	707, 835
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	117, 301, 434
Cac8I	GCNNGC	3 cut(s)	267, 327, 805
Cfr13I	GGNCC	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	4 cut(s)	289, 300, 700, 745
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	5 cut(s)	120, 383, 476, 666, 786
DpnI	GATC	2 cut(s)	173, 381
DpnII	GATC	2 cut(s)	171, 379
DraIII	CACNNNGTG	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	705
Eam1105I	GACNNNNNGTC	1 cut(s)	509
EciI	GGCGGA	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	2 cut(s)	301, 404
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	4 cut(s)	292, 303, 703, 748
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 469, 501
FatI	CATG	4 cut(s)	288, 299, 699, 744
FauI	CCCGC	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	6 cut(s)	553, 603, 606, 705, 723, 770
FokI	GGATG	3 cut(s)	124, 308, 421
Fsp4HI	GCNGC	6 cut(s)	553, 603, 606, 705, 723, 770
FspBI	CTAG	3 cut(s)	609, 765, 813
GluI	GCNGC	6 cut(s)	553, 603, 606, 705, 723, 770
HaeIII	GGCC	2 cut(s)	707, 835
Hin1II	CATG	4 cut(s)	292, 303, 703, 748
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	4 cut(s)	190, 335, 394, 422
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	150, 189, 427, 562
Hpy188III	TCNNGA	2 cut(s)	313, 777
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	3 cut(s)	88, 250, 532
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	9 cut(s)	46, 164, 237, 299, 402, 620, 691, 748, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	472, 602, 728, 809
HpyF3I	CTNAG	5 cut(s)	120, 383, 476, 666, 786
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	292, 303, 703, 748
Kzo9I	GATC	2 cut(s)	171, 379
LmnI	GCTCC	2 cut(s)	5, 809
Lsp1109I	GCAGC	5 cut(s)	564, 592, 614, 709, 756
LweI	GCATC	3 cut(s)	286, 411, 443
MaeI	CTAG	3 cut(s)	609, 765, 813
MaeII	ACGT	1 cut(s)	589
MalI	GATC	2 cut(s)	173, 381
MboI	GATC	2 cut(s)	171, 379
MflI	RGATCY	1 cut(s)	171
MluCI	AATT	7 cut(s)	19, 47, 140, 249, 318, 456, 816
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	807
MnlI	CCTC	6 cut(s)	211, 286, 287, 428, 528, 823
Mph1103I	ATGCAT	2 cut(s)	301, 404
MseI	TTAA	3 cut(s)	248, 653, 752
MspA1I	CMGCKG	2 cut(s)	605, 670
MspR9I	CCNGG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	4 cut(s)	472, 602, 728, 809
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	2 cut(s)	171, 379
NlaIII	CATG	4 cut(s)	292, 303, 703, 748
NlaIV	GGNNCC	3 cut(s)	7, 742, 834
NsiI	ATGCAT	2 cut(s)	301, 404
PaeR7I	CTCGAG	1 cut(s)	419
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	3 cut(s)	190, 335, 394
PkrI	GCNGC	6 cut(s)	554, 604, 607, 706, 724, 771
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	7, 742, 834
PspPI	GGNCC	1 cut(s)	833
PspXI	VCTCGAGB	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	171
PvuII	CAGCTG	2 cut(s)	605, 670
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	248, 653, 752
SatI	GCNGC	6 cut(s)	553, 603, 606, 705, 723, 770
Sau3AI	GATC	2 cut(s)	171, 379
Sau96I	GGNCC	1 cut(s)	833
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	716
SfaNI	GCATC	3 cut(s)	286, 411, 443
SfcI	CTRYAG	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	7 cut(s)	19, 47, 140, 249, 318, 456, 816
SsiI	CCGC	4 cut(s)	263, 647, 704, 807
SspMI	CTAG	3 cut(s)	609, 765, 813
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	81, 420
TasI	AATT	7 cut(s)	19, 47, 140, 249, 318, 456, 816
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	3 cut(s)	190, 335, 394
Tru1I	TTAA	3 cut(s)	248, 653, 752
Tru9I	TTAA	3 cut(s)	248, 653, 752
TseI	GCWGC	5 cut(s)	552, 602, 605, 722, 769
TspDTI	ATGAA	2 cut(s)	12, 360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XhoI	CTCGAG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	3 cut(s)	609, 765, 813
Zsp2I	ATGCAT	2 cut(s)	301, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.