Rorug02G0645100

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003973
Physical Location & Seq
Forward (+)
75554104 .. 75554959
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0645100.1

Sequence Viewer

Length: 429 bp
ATGGCCCTGAGCTCAAGCTCTTCTTCTTCCACGTCCTCCTCTTTCTTCAGAGGTGATATGGGCTCCGTCCAATTGGGCCCAAAGCTATCCTTGTCTACTACTACCCAACGCAGATTGCCATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGTAGTACCAAGAACGGTCGCGATTCCAAAGGCCAAAGGCTCGGCGTCAAGATTTACGGTGACCAGGTCGCCAAGCCCGGCTCCATCTTCATACGTCAGCGTGGCACCAAGTTCCATGCGGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCTTTGATAGATGGCTTGGTTAAGTTTGAGAAGTATGGACCTGACAGGAAGAAGGTTTGTTCTGAAGTTGTTGAACCTTACAGTTGTTGGCTTGAAAGAGTAGGTACTTTGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

142

Amino Acids

15.38

Weight (kDa)

10.07

Isoelectric Point (pI)

24.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27 PF01016 46 - 123 1.1e-34 Ribosomal L27 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 95
AccII CGCG 2 cut(s) 137, 174
AciI CCGC 1 cut(s) 272
AcuI CTGAAG 2 cut(s) 31, 396
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 160, 418
AgsI TTSAA 3 cut(s) 131, 386, 407
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 4 cut(s) 12, 18, 85, 152
AluI AGCT 4 cut(s) 12, 18, 85, 152
Alw21I GWGCWC 1 cut(s) 14
AoxI GGCC 3 cut(s) 3, 76, 184
ApaI GGGCCC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 5 cut(s) 4, 76, 77, 298, 350
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 65, 224
AvaII GGWCC 2 cut(s) 298, 350
BaeGI GKGCMC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 3 cut(s) 14, 65, 80
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 2 cut(s) 245, 317
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 1 cut(s) 231
BfaI CTAG 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 218, 231
Bme18I GGWCC 2 cut(s) 298, 350
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 5 cut(s) 4, 76, 77, 298, 350
BmiI GGNNCC 4 cut(s) 64, 78, 235, 259
BmrFI CCNGG 2 cut(s) 218, 231
Bpu10I CCTNAGC 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 80
Bsh1236I CGCG 2 cut(s) 137, 174
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 5, 78, 186
BshNI GGYRCC 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 231
BsnI GGCC 3 cut(s) 5, 78, 186
Bsp120I GGGCCC 1 cut(s) 76
Bsp1286I GDGCHC 3 cut(s) 14, 65, 80
Bsp68I TCGCGA 1 cut(s) 174
BspACI CCGC 1 cut(s) 272
BspANI GGCC 3 cut(s) 5, 78, 186
BspFNI CGCG 2 cut(s) 137, 174
BspLI GGNNCC 4 cut(s) 64, 78, 235, 259
BspQI GCTCTTC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 170, 212, 395
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 8
BstEII GGTNACC 1 cut(s) 212
BstFNI CGCG 2 cut(s) 137, 174
BstHHI GCGC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 172
BstNI CCWGG 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 216, 229
BstSLI GKGCMC 1 cut(s) 80
BstUI CGCG 2 cut(s) 137, 174
BsuRI GGCC 3 cut(s) 5, 78, 186
BtrI CACGTC 1 cut(s) 33
BtuMI TCGCGA 1 cut(s) 174
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 5 cut(s) 4, 76, 77, 298, 350
CseI GACGC 1 cut(s) 187
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 2 cut(s) 159, 417
CviAII CATG 1 cut(s) 269
CviQI GTAC 2 cut(s) 159, 417
DdeI CTNAG 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 3 cut(s) 14, 65, 80
Eco47I GGWCC 2 cut(s) 298, 350
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 31, 396
Eco91I GGTNACC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 12
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 3 cut(s) 14, 65, 80
FaeI CATG 1 cut(s) 272
FaiI YATR 5 cut(s) 59, 245, 270, 303, 348
FalI AAGNNNNNCTT 4 cut(s) 7, 39, 74, 106
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 265
FblI GTMKAC 1 cut(s) 95
FriOI GRGCYC 3 cut(s) 14, 65, 80
FspBI CTAG 1 cut(s) 427
GlaI GCGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 5, 78, 186
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 127, 176
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 65, 224
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 50, 376
Hpy188III TCNNGA 2 cut(s) 173, 202
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 3 cut(s) 170, 212, 395
HpyCH4IV ACGT 2 cut(s) 32, 247
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 32, 247
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 137
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 3 cut(s) 68, 149, 239
LpnPI CCDG 7 cut(s) 20, 138, 203, 230, 244, 343, 366
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 1 cut(s) 427
MaeII ACGT 2 cut(s) 32, 247
MaeIII GTNAC 1 cut(s) 212
MboII GAAGA 7 cut(s) 12, 15, 18, 37, 232, 289, 373
MfeI CAATTG 1 cut(s) 71
MhlI GDGCHC 3 cut(s) 14, 65, 80
MluCI AATT 1 cut(s) 71
MnlI CCTC 3 cut(s) 44, 46, 49
MseI TTAA 1 cut(s) 333
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 218, 231
MunI CAATTG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 137, 174
NciI CCSGG 1 cut(s) 231
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 4 cut(s) 64, 78, 235, 259
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 212
NruI TCGCGA 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 127, 176
PflFI GACNNNGTC 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 4 cut(s) 64, 78, 235, 259
PspOMI GGGCCC 1 cut(s) 76
PspPI GGNCC 5 cut(s) 4, 76, 77, 298, 350
PsyI GACNNNGTC 1 cut(s) 218
RruI TCGCGA 1 cut(s) 174
RsaI GTAC 2 cut(s) 160, 418
RsaNI GTAC 2 cut(s) 159, 417
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 333
Sau96I GGNCC 5 cut(s) 4, 76, 77, 298, 350
ScrFI CCNGG 2 cut(s) 218, 231
SduI GDGCHC 3 cut(s) 14, 65, 80
SexAI ACCWGGT 1 cut(s) 216
SinI GGWCC 2 cut(s) 298, 350
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 71
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 427
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 216, 229
TaaI ACNGT 3 cut(s) 170, 212, 395
TaiI ACGT 2 cut(s) 35, 250
TasI AATT 1 cut(s) 71
TfiI GAWTC 2 cut(s) 127, 176
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 298, 350
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.