Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342113.1

Orthogroup ID

OG0003973

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 825

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

cgagcagcacaatttctttcccagttagaattgaggaaccggaatcttcagtggccaaatttgtagcccccttttcagctccaaatcttcaactaagtgcaaccagagaaccaacaaattttcaggggttcatagttaagcgtttgagtgagaataattcagtacaggacaaaatgttggccactcttcaaatgtcaccagacccagcacaaattgtgttggaaatgctgcaaagctcttttgctcagtgttggagagaaggaggttttttttcagaagtaactgtcatgaagggttacatttacctactggagacactaatgagagagtcaaagcacattggacctcgtgtgaaagaagatgcaagaaagctggcagtgcagtggaaaactagaatgagagccgatgctggcaactcgttggagattttactatttttgcagtttttggctacatatgaattgctctctaccataaatggaggtgacattgtcaatcttcttggggtgatttctcggcatagacaggctctagaactatgtcagtcagttggctttgcagataagattcctggtaagtttcttgaaatttggctttcacggtgtgctctatctttaccattactcttatttagtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

7.68

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27220 AT5G27220 AT5G27220 AT5G27220
fragaria_vesca	FvH4_6g04390
malus_domestica	MD04G1214300.v1.1 MD04G1214400.v1.1 MD04G1214500.v1.1 MD12G1228900.v1.1 MD12G1229100.v1.1
prunus_persica	Prupe.6G334100_v2.0.a1 Prupe.6G334200_v2.0.a1 Prupe.6G334200_v2.0.a1 Prupe.6G334200_v2.0.a1 Prupe.6G334400_v2.0.a1 Prupe.6G334500_v2.0.a1
pyrus_communis	pycom04g18950 pycom12g21350 pycom12g21360
rosa_chinensis	RchiOBHm_Chr3g0453001
rosa_laevigata	RLG00000025551
rosa_multiflora	Rmu_co8146304.1_g000001 Rmu_co8342113.1_g000001 Rmu_sc0005888.1_g000003
rosa_roxburghii	Rroxscaffold_6G00430100
rosa_rugosa	Rorug02G0645100 Rorug02G0645200 Rorug02G0645300
rosa_samantha	Rh3AG047500 Rh3BG050000 Rh3CG048800 Rh3DG049600
rosa_wichuraiana	Rw3G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	53, 179
AcsI	RAATTY	3 cut(s)	58, 117, 587
AcuI	CTGAAG	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	604
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	91, 190, 586
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	3 cut(s)	79, 236, 372
AluI	AGCT	3 cut(s)	79, 236, 372
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	53, 179
ApeKI	GCWGC	2 cut(s)	5, 228
ApoI	RAATTY	3 cut(s)	58, 117, 587
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	188, 496, 519
AvaII	GGWCC	1 cut(s)	343
BalI	TGGCCA	2 cut(s)	55, 181
BauI	CACGAG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	17, 215
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	392, 532
BisI	GCNGC	2 cut(s)	6, 229
BlsI	GCNGC	2 cut(s)	7, 230
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	351, 396
BmuI	ACTGGG	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	22, 314
BseBI	CCWGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	22, 314
BseXI	GCAGC	2 cut(s)	17, 215
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	55, 181
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	55, 181
Bsp1286I	GDGCHC	1 cut(s)	609
BspANI	GGCC	2 cut(s)	55, 181
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	22, 314
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	285, 602
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	374, 411
BstDEI	CTNAG	2 cut(s)	94, 245
BstMAI	GTCTC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	17, 215
BsuRI	GGCC	2 cut(s)	55, 181
BtsI	GCAGTG	2 cut(s)	383, 388
BtsIMutI	CAGTG	4 cut(s)	56, 253, 383, 388
Cac8I	GCNNGC	2 cut(s)	374, 411
CciI	TCATGA	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	288
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	94, 245
DraIII	CACNNNGTG	1 cut(s)	604
EaeI	YGGCCR	2 cut(s)	53, 179
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	291
FaiI	YATR	7 cut(s)	133, 289, 456, 458, 475, 521, 540
FatI	CATG	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	6, 229
Fsp4HI	GCNGC	2 cut(s)	6, 229
FspBI	CTAG	2 cut(s)	392, 532
GluI	GCNGC	2 cut(s)	6, 229
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	55, 181
HapII	CCGG	1 cut(s)	40
Hin1II	CATG	1 cut(s)	291
HinfI	GANTC	3 cut(s)	43, 328, 567
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	3 cut(s)	188, 496, 519
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	288, 532, 583
HpyAV	CCTTC	2 cut(s)	253, 285
HpyCH4III	ACNGT	2 cut(s)	285, 602
HpyCH4V	TGCA	6 cut(s)	100, 231, 364, 381, 441, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	94, 245
Hsp92II	CATG	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	2 cut(s)	17, 215
LweI	GCATC	2 cut(s)	351, 396
MaeI	CTAG	2 cut(s)	392, 532
MaeIII	GTNAC	4 cut(s)	194, 279, 295, 484
MboII	GAAGA	5 cut(s)	38, 79, 178, 370, 490
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	2 cut(s)	55, 181
MluCI	AATT	8 cut(s)	11, 29, 58, 117, 156, 212, 460, 587
MluNI	TGGCCA	2 cut(s)	55, 181
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	3 cut(s)	200, 232, 401
MnlI	CCTC	4 cut(s)	27, 256, 356, 475
Mox20I	TGGCCA	2 cut(s)	55, 181
MscI	TGGCCA	2 cut(s)	55, 181
MseI	TTAA	1 cut(s)	137
Msp20I	TGGCCA	2 cut(s)	55, 181
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeI	CATATG	1 cut(s)	456
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	2 cut(s)	194, 484
PagI	TCATGA	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	43, 567
PflFI	GACNNNGTC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	7, 230
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	570
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	490
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	6, 229
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	7 cut(s)	81, 238, 267, 308, 348, 374, 486
SfaNI	GCATC	2 cut(s)	351, 396
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	8 cut(s)	11, 29, 58, 117, 156, 212, 460, 587
SspMI	CTAG	2 cut(s)	392, 532
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	285, 602
TasI	AATT	8 cut(s)	11, 29, 58, 117, 156, 212, 460, 587
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	43, 567
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	4 cut(s)	56, 253, 383, 388
TseFI	GTSAC	2 cut(s)	194, 484
TseI	GCWGC	2 cut(s)	5, 228
Tsp45I	GTSAC	2 cut(s)	194, 484
TspDTI	ATGAA	3 cut(s)	120, 304, 473
TspRI	CASTG	4 cut(s)	56, 253, 383, 388
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	3 cut(s)	58, 117, 587
XbaI	TCTAGA	1 cut(s)	531
XspI	CTAG	2 cut(s)	392, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.