Rorug02G0645200

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003973
Physical Location & Seq
Reverse (-)
75556570 .. 75557682
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0645200.1

Sequence Viewer

Length: 300 bp
ATGGACGCCATAGATTCAGTGTTTGAGCCTCTGAGAGAATTCTCCAAGGACAGCGTTCGCCTGGTTAAACGCTGCCACAAACCCGACCGGAAAGAATCTTATATTGATGCGGTGCGTATTGCATGCAACAGAATTCACAAAGGTGGCGGTACGTACGGCCATCGGGTTCGTGGTGATGGGATTCGTTGGCTTCTTTGTGAAGCTCATCTTCATTCCGATCAACAACATCATCGTCGGAGCTGCTTAGGTCATTTGGCACTTGTAAGAAAGAAGATGGAGCTATCAAGGAACACTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

99

Amino Acids

11.53

Weight (kDa)

9.89

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 147
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 2 cut(s) 38, 132
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 2 cut(s) 151, 155
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 3 cut(s) 203, 240, 280
AluI AGCT 3 cut(s) 203, 240, 280
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 72, 240
ApoI RAATTY 2 cut(s) 38, 132
AsuHPI GGTGA 1 cut(s) 185
BbvI GCAGC 2 cut(s) 59, 227
BccI CCATC 3 cut(s) 168, 170, 268
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 2 cut(s) 73, 241
BlsI GCNGC 2 cut(s) 74, 242
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 87
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 59, 227
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 88
BsiWI CGTACG 1 cut(s) 153
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 110, 147
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 32, 244
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 60
BstSNI TACGTA 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 59, 227
BsuRI GGCC 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 124
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 150, 154
CviAII CATG 1 cut(s) 123
CviJI RGCY 6 cut(s) 28, 159, 190, 203, 240, 280
CviKI_1 RGCY 6 cut(s) 28, 159, 190, 203, 240, 280
CviQI GTAC 2 cut(s) 150, 154
DdeI CTNAG 2 cut(s) 32, 244
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 157
Eco105I TACGTA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 45
EcoRI GAATTC 2 cut(s) 38, 132
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 126
FaiI YATR 3 cut(s) 11, 102, 124
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 73, 241
Fsp4HI GCNGC 2 cut(s) 73, 241
GluI GCNGC 2 cut(s) 73, 241
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 126
HinfI GANTC 3 cut(s) 14, 95, 181
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 33, 217, 237
Hpy99I CGWCG 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 122, 126
HpyF3I CTNAG 2 cut(s) 32, 244
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 237, 277
LpnPI CCDG 3 cut(s) 47, 74, 101
Lsp1109I GCAGC 2 cut(s) 59, 227
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 152
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 200, 283
MluCI AATT 2 cut(s) 38, 132
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 1 cut(s) 39
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 126
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 141
PaeI GCATGC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 14, 95, 181
Pfl23II CGTACG 1 cut(s) 153
PkrI GCNGC 2 cut(s) 74, 242
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspLI CGTACG 1 cut(s) 153
RsaI GTAC 2 cut(s) 151, 155
RsaNI GTAC 2 cut(s) 150, 154
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 73, 241
Sau3AI GATC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 62
SetI ASST 6 cut(s) 145, 155, 205, 242, 250, 282
SfaNI GCATC 1 cut(s) 97
SgeI CNNG 9 cut(s) 58, 73, 74, 95, 100, 135, 176, 182, 272
SmiMI CAYNNNNRTG 1 cut(s) 141
SnaBI TACGTA 1 cut(s) 153
SphI GCATGC 1 cut(s) 126
Sse9I AATT 2 cut(s) 38, 132
SsiI CCGC 2 cut(s) 110, 147
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 155
TasI AATT 2 cut(s) 38, 132
TfiI GAWTC 3 cut(s) 14, 95, 181
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 72, 240
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 24
XapI RAATTY 2 cut(s) 38, 132
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.