Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Forward (+)

13801476 .. 13806376

Gene Structure 4901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G110600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGTTAGCAAAAGGACTGAGAGAGATTCAGAAGCTGGAGGGTCACACAGATAAGGTCTGGAGCCTCGCATGGAACCCAGTAACTGGTGTTGCCGGAATCCCCCTTTCCTTCGCTTCATGTAGTGGTGACAAGACCGTCCGTATTTGGGAACACAACCCCTCTAGCTCCACTTCTTCGTGGGATTGCAAGGCAGTTTTGGATGAAACTCACACTAGAACCGTCCGATCGTGCGCTTGGTCCCCATCTGGGAAATTTTTGGCCACTGCCAGCTTCGACGCCACCACTGCAATTTGGGAAAATGTTGGGGGTGATTATGAATGTGTGTCCACTTTAGAGGGTCATGAAAACGAAGTGAAAAGTGTGAGTTGGAATCCATCTGGGTCTCTGCTTGCGACTTGTGGCCGGGATAAAACTGTATGGATATGGGAAGTGCAACCCGGAAATGAGTTTGATTGTGTTGCAGTGTTGCAAGGCCATACACAAGATGTGAAGATGGTTCAGTGGCATCCAAGCAGGAATCTTATATTTTCTTGTAGCTATGATAACACTGTCAAGATATGGGCAGATGAAGGTGATGATGATGATTGGGCGTGTGTTCAAACATTAGGTGAAACTAACAATGGTCACTCTTCTACTGTCTGGGCTTTATCGTTTAATGATGGTGGAGACAAAATGGTTACCTGCAGTGACGATCTTACTTTAAAGATATGGGGAACAGACAATGAAAAGATGCAATCTACGGATGACTTTGTACCATGGAGACATCTTTGCACTCTTTCAGGTTATCATGATCGGACAATATTTTCAGTTCATTGGTCAAGGGACAATATCATTGCCAGTGGAGCTGCTGATGACACGATAAGATTTTTTGTGGAGAATGATGATAAAGATGGTTTGGTTGATGGACCTTCGTATAAATTGCTTCTGAAAAAGGAGAAGGCCCATGACATGGATATAAACTCAGTGCAATGGAGCCCTGGGGAGGATCGGATTCTTGCTTCGGCAGCTGATGACGGAACGATTAAAATATGGGAGCTGACATCTGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

352

Amino Acids

38.93

Weight (kDa)

4.69

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	692
AccB7I	CCANNNNNTGG	2 cut(s)	86, 952
AclWI	GGATC	1 cut(s)	996
AcoI	YGGCCR	2 cut(s)	261, 403
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	5 cut(s)	86, 148, 249, 952, 985
AgsI	TTSAA	1 cut(s)	602
AjnI	CCWGG	1 cut(s)	979
AluBI	AGCT	7 cut(s)	37, 168, 273, 540, 848, 1010, 1039
AluI	AGCT	7 cut(s)	37, 168, 273, 540, 848, 1010, 1039
Alw26I	GTCTC	3 cut(s)	390, 663, 757
AlwI	GGATC	1 cut(s)	996
AlwNI	CAGNNNCTG	2 cut(s)	37, 86
AoxI	GGCC	4 cut(s)	261, 403, 475, 942
ApeKI	GCWGC	2 cut(s)	848, 1007
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	3 cut(s)	240, 908, 943
AsuC2I	CCSGG	2 cut(s)	407, 441
AsuHPI	GGTGA	4 cut(s)	140, 323, 587, 623
AvaII	GGWCC	2 cut(s)	240, 908
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	980
BbvI	GCAGC	2 cut(s)	835, 1019
BccI	CCATC	6 cut(s)	253, 385, 490, 656, 887, 899
BciT130I	CCWGG	1 cut(s)	981
BcnI	CCSGG	2 cut(s)	407, 441
BcoDI	GTCTC	3 cut(s)	390, 663, 757
BfaI	CTAG	2 cut(s)	165, 216
BfmI	CTRYAG	2 cut(s)	685, 1047
BfuAI	ACCTGC	1 cut(s)	692
BisI	GCNGC	2 cut(s)	849, 1008
BlsI	GCNGC	2 cut(s)	850, 1009
Bme1390I	CCNGG	3 cut(s)	407, 441, 981
Bme18I	GGWCC	2 cut(s)	240, 908
BmgT120I	GGNCC	3 cut(s)	240, 908, 943
BmiI	GGNNCC	4 cut(s)	65, 77, 242, 977
BmrFI	CCNGG	3 cut(s)	407, 441, 981
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	517, 723
BmuI	ACTGGG	1 cut(s)	74
BpmI	CTGGAG	2 cut(s)	59, 82
BpuMI	CCSGG	2 cut(s)	407, 441
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	758, 979, 980
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 148, 249, 952, 985
Bse1I	ACTGG	3 cut(s)	80, 91, 840
Bse3DI	GCAATG	2 cut(s)	834, 977
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	3 cut(s)	758, 979, 980
BseGI	GGATG	3 cut(s)	208, 508, 751
BseLI	CCNNNNNNNGG	5 cut(s)	86, 148, 249, 952, 985
BseMI	GCAATG	2 cut(s)	834, 977
BseMII	CTCAG	2 cut(s)	11, 978
BseNI	ACTGG	3 cut(s)	80, 91, 840
BseXI	GCAGC	2 cut(s)	835, 1019
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	263, 405, 477, 944
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	96, 406, 441
BslFI	GGGAC	2 cut(s)	226, 839
BslI	CCNNNNNNNGG	5 cut(s)	86, 148, 249, 952, 985
BsmAI	GTCTC	3 cut(s)	390, 663, 757
BsmFI	GGGAC	2 cut(s)	226, 839
BsnI	GGCC	4 cut(s)	263, 405, 477, 944
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	980
Bsp143I	GATC	4 cut(s)	227, 694, 793, 988
Bsp19I	CCATGG	1 cut(s)	758
BspANI	GGCC	4 cut(s)	263, 405, 477, 944
BspCNI	CTCAG	2 cut(s)	12, 977
BspHI	TCATGA	2 cut(s)	343, 790
BspLI	GGNNCC	4 cut(s)	65, 77, 242, 977
BspMAI	CTGCAG	2 cut(s)	689, 1051
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	1 cut(s)	996
BspTNI	GGTCTC	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	834, 977
BsrI	ACTGG	3 cut(s)	80, 91, 840
BssECI	CCNNGG	3 cut(s)	758, 979, 980
BssMI	GATC	4 cut(s)	227, 694, 793, 988
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	5 cut(s)	139, 223, 418, 553, 640
Bst6I	CTCTTC	1 cut(s)	637
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	271, 393, 1051
BstDEI	CTNAG	2 cut(s)	20, 964
BstDSI	CCRYGG	1 cut(s)	758
BstEII	GGTNACC	1 cut(s)	679
BstF5I	GGATG	3 cut(s)	208, 508, 751
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	4 cut(s)	230, 697, 796, 991
BstMAI	GTCTC	3 cut(s)	390, 663, 757
BstMBI	GATC	4 cut(s)	227, 694, 793, 988
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 845, 1007
BstNI	CCWGG	1 cut(s)	981
BstPI	GGTNACC	1 cut(s)	679
BstSCI	CCNGG	3 cut(s)	405, 439, 979
BstSFI	CTRYAG	2 cut(s)	685, 1047
BstV1I	GCAGC	2 cut(s)	835, 1019
BsuRI	GGCC	4 cut(s)	263, 405, 477, 944
BtgI	CCRYGG	1 cut(s)	758
BtsCI	GGATG	3 cut(s)	208, 508, 751
BtsI	GCAGTG	4 cut(s)	264, 285, 471, 694
BtsIMutI	CAGTG	8 cut(s)	264, 285, 471, 509, 549, 694, 847, 972
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	3 cut(s)	271, 393, 1051
CaiI	CAGNNNCTG	2 cut(s)	37, 86
CciI	TCATGA	2 cut(s)	343, 790
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	240, 908, 943
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	7 cut(s)	72, 120, 344, 759, 791, 947, 952
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	2 cut(s)	20, 964
DpnI	GATC	4 cut(s)	229, 696, 795, 990
DpnII	GATC	4 cut(s)	227, 694, 793, 988
DraI	TTTAAA	1 cut(s)	705
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	261, 403
Eam1104I	CTCTTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	758
Eco24I	GRGCYC	1 cut(s)	980
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	240, 908
Eco91I	GGTNACC	1 cut(s)	679
EcoO65I	GGTNACC	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	980
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	7 cut(s)	75, 123, 347, 762, 794, 950, 955
FaqI	GGGAC	2 cut(s)	226, 839
FatI	CATG	7 cut(s)	71, 119, 343, 758, 790, 946, 951
Fnu4HI	GCNGC	2 cut(s)	849, 1008
FokI	GGATG	3 cut(s)	215, 495, 758
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	2 cut(s)	849, 1008
FspBI	CTAG	2 cut(s)	165, 216
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	849, 1008
GsuI	CTGGAG	2 cut(s)	59, 82
HaeIII	GGCC	4 cut(s)	263, 405, 477, 944
HapII	CCGG	3 cut(s)	96, 406, 441
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	75, 123, 347, 762, 794, 950, 955
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	5 cut(s)	28, 99, 373, 520, 994
HpaII	CCGG	3 cut(s)	96, 406, 441
HphI	GGTGA	4 cut(s)	140, 323, 587, 623
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	5 cut(s)	33, 227, 798, 930, 993
Hpy188III	TCNNGA	4 cut(s)	61, 344, 556, 791
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	121, 566, 921, 934
HpyCH4III	ACNGT	5 cut(s)	139, 223, 418, 553, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 845, 1007
HpyF3I	CTNAG	2 cut(s)	20, 964
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	7 cut(s)	75, 123, 347, 762, 794, 950, 955
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	227, 694, 793, 988
LmnI	GCTCC	5 cut(s)	63, 173, 845, 975, 1036
Lsp1109I	GCAGC	2 cut(s)	835, 1019
LweI	GCATC	2 cut(s)	517, 723
MaeI	CTAG	2 cut(s)	165, 216
MaeIII	GTNAC	6 cut(s)	44, 82, 128, 626, 679, 689
MalI	GATC	4 cut(s)	229, 696, 795, 990
MboI	GATC	4 cut(s)	227, 694, 793, 988
MboII	GAAGA	3 cut(s)	168, 505, 624
MhlI	GDGCHC	1 cut(s)	980
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	254, 291, 920
MluNI	TGGCCA	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	5 cut(s)	34, 77, 172, 331, 979
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	3 cut(s)	657, 704, 1026
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	1010
MspI	CCGG	3 cut(s)	96, 406, 441
MspR9I	CCNGG	3 cut(s)	407, 441, 981
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	3 cut(s)	287, 845, 1007
NciI	CCSGG	2 cut(s)	407, 441
NcoI	CCATGG	1 cut(s)	758
NdeII	GATC	4 cut(s)	227, 694, 793, 988
NlaIII	CATG	7 cut(s)	75, 123, 347, 762, 794, 950, 955
NlaIV	GGNNCC	4 cut(s)	65, 77, 242, 977
NmuCI	GTSAC	4 cut(s)	44, 128, 626, 689
PagI	TCATGA	2 cut(s)	343, 790
PasI	CCCWGGG	1 cut(s)	980
PfeI	GAWTC	5 cut(s)	28, 99, 373, 520, 994
PflMI	CCANNNNNTGG	2 cut(s)	86, 952
PkrI	GCNGC	2 cut(s)	850, 1009
Ple19I	CGATCG	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	979
PspEI	GGTNACC	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	4 cut(s)	65, 77, 242, 977
PspPI	GGNCC	3 cut(s)	240, 908, 943
PstI	CTGCAG	2 cut(s)	689, 1051
PstNI	CAGNNNCTG	2 cut(s)	37, 86
PvuI	CGATCG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	1010
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	657, 704, 1026
SatI	GCNGC	2 cut(s)	849, 1008
Sau3AI	GATC	4 cut(s)	227, 694, 793, 988
Sau96I	GGNCC	3 cut(s)	240, 908, 943
ScrFI	CCNGG	3 cut(s)	407, 441, 981
SduI	GDGCHC	1 cut(s)	980
SfaNI	GCATC	2 cut(s)	517, 723
SfcI	CTRYAG	2 cut(s)	685, 1047
SinI	GGWCC	2 cut(s)	240, 908
Sse9I	AATT	3 cut(s)	254, 291, 920
SspI	AATATT	1 cut(s)	804
SspMI	CTAG	2 cut(s)	165, 216
StyD4I	CCNGG	3 cut(s)	405, 439, 979
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	5 cut(s)	139, 223, 418, 553, 640
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	254, 291, 920
TfiI	GAWTC	5 cut(s)	28, 99, 373, 520, 994
Tru1I	TTAA	3 cut(s)	657, 704, 1026
Tru9I	TTAA	3 cut(s)	657, 704, 1026
TscAI	CASTG	8 cut(s)	271, 292, 471, 509, 556, 694, 847, 972
TseFI	GTSAC	4 cut(s)	44, 128, 626, 689
TseI	GCWGC	2 cut(s)	848, 1007
Tsp45I	GTSAC	4 cut(s)	44, 128, 626, 689
TspDTI	ATGAA	7 cut(s)	108, 219, 333, 360, 585, 741, 803
TspGWI	ACGGA	3 cut(s)	131, 758, 1032
TspRI	CASTG	8 cut(s)	271, 292, 471, 509, 556, 694, 847, 972
Van91I	CCANNNNNTGG	2 cut(s)	86, 952
VpaK11BI	GGWCC	2 cut(s)	240, 908
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	2 cut(s)	165, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.