Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Reverse (-)

10868365 .. 10868805

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0133100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGGAATTTTAGTGTGGTTTCTTTTCTGCTCCTCAAATTGGCAATGTTATGGTGCATAACCGCCAGCCGTTGTCCGGATTGTGGCCGCACCACCGTGCCGTATCCACTGAGCACGGAGCCAAACTGCGGCGACCAGGCATACAAGGTTCAGTGCAATGCAGGAACACTGTGGTTCCACACCCTCAACAACTCCTATCCAGTCACATCCGTTAATCCGCTAACGCAGCGGATTGTGATCCAACCACCAGGAGTGGCAAACAAGAACACATGTGTCGCTGCTGATTTCCAATCTCAGGGAATTTTGCTGGACAACAACCTTCCCTTCAACATTAGTGGCAGCAACACTGTGATAGGCATGAACTGTTCAACTGAAATGCTTACCACCTCCTTAAACTGCTCCTCCAATAGCATATGCCACGACTACGTAGGTGTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

146

Amino Acids

15.87

Weight (kDa)

6.67

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	25 - 80	1.2e-08	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	5 cut(s)	63, 88, 129, 218, 229
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	7, 300
AfiI	CCNNNNNNNGG	5 cut(s)	40, 76, 83, 128, 295
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	328, 369
AjnI	CCWGG	2 cut(s)	135, 247
AleI	CACNNNNGTG	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	232
Aor13HI	TCCGGA	1 cut(s)	76
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	3 cut(s)	226, 278, 339
ApoI	RAATTY	2 cut(s)	7, 300
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	238, 265, 351
BceAI	ACGGC	2 cut(s)	54, 85
BciT130I	CCWGG	2 cut(s)	137, 249
BciVI	GTATCC	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	88, 130, 227, 279, 340
BlsI	GCNGC	5 cut(s)	89, 131, 228, 280, 341
Bme1390I	CCNGG	2 cut(s)	137, 249
BmiI	GGNNCC	2 cut(s)	120, 176
BmrFI	CCNGG	2 cut(s)	137, 249
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 76, 83, 128, 295
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	51, 163
Bse8I	GATNNNNATC	1 cut(s)	236
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	137, 249
BseGI	GGATG	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	5 cut(s)	40, 76, 83, 128, 295
BseMI	GCAATG	2 cut(s)	51, 163
BseMII	CTCAG	2 cut(s)	101, 308
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	23, 391
BseXI	GCAGC	3 cut(s)	238, 265, 351
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	5 cut(s)	40, 76, 83, 128, 295
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	5 cut(s)	63, 88, 129, 218, 229
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	102, 307
BspEI	TCCGGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	120, 176
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	51, 163
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	137, 249
Bst4CI	ACNGT	4 cut(s)	97, 171, 349, 365
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	110, 294
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	137, 249
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	135, 247
BstSNI	TACGTA	1 cut(s)	427
BstV1I	GCAGC	3 cut(s)	238, 265, 351
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	4 cut(s)	107, 158, 167, 345
Cac8I	GCNNGC	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	2 cut(s)	270, 358
CviJI	RGCY	3 cut(s)	69, 87, 121
CviKI_1	RGCY	3 cut(s)	69, 87, 121
DdeI	CTNAG	2 cut(s)	110, 294
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	135, 247
FaeI	CATG	2 cut(s)	273, 361
FaiI	YATR	7 cut(s)	52, 59, 142, 271, 359, 413, 415
FatI	CATG	2 cut(s)	269, 357
FauNDI	CATATG	1 cut(s)	413
Fnu4HI	GCNGC	5 cut(s)	88, 130, 227, 279, 340
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	88, 130, 227, 279, 340
GluI	GCNGC	5 cut(s)	88, 130, 227, 279, 340
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	2 cut(s)	273, 361
HpaII	CCGG	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	329, 334
HpyCH4III	ACNGT	4 cut(s)	97, 171, 349, 365
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	3 cut(s)	57, 156, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	2 cut(s)	110, 294
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	273, 361
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	36, 118, 404
Lsp1109I	GCAGC	3 cut(s)	238, 265, 351
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	7, 38, 300
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	44, 194, 397, 412
MroI	TCCGGA	1 cut(s)	76
MseI	TTAA	2 cut(s)	213, 392
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	137, 249
MvaI	CCWGG	2 cut(s)	137, 249
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeI	CATATG	1 cut(s)	413
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	273, 361
NlaIV	GGNNCC	2 cut(s)	120, 176
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	273
OliI	CACNNNNGTG	1 cut(s)	95
PciI	ACATGT	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	89, 131, 228, 280, 341
Ppu21I	YACGTR	1 cut(s)	427
PscI	ACATGT	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	135, 247
PspGI	CCWGG	2 cut(s)	135, 247
PspN4I	GGNNCC	2 cut(s)	120, 176
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	213, 392
SatI	GCNGC	5 cut(s)	88, 130, 227, 279, 340
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	137, 249
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	5 cut(s)	150, 321, 389, 429, 433
SmiMI	CAYNNNNRTG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	427
Sse9I	AATT	3 cut(s)	7, 38, 300
SsiI	CCGC	5 cut(s)	63, 88, 129, 218, 229
StyD4I	CCNGG	2 cut(s)	135, 247
TaaI	ACNGT	4 cut(s)	97, 171, 349, 365
TaiI	ACGT	1 cut(s)	429
TasI	AATT	3 cut(s)	7, 38, 300
TauI	GCSGC	2 cut(s)	90, 132
Tru1I	TTAA	2 cut(s)	213, 392
Tru9I	TTAA	2 cut(s)	213, 392
TscAI	CASTG	4 cut(s)	114, 158, 174, 352
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	226, 278, 339
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	374
TspGWI	ACGGA	2 cut(s)	131, 199
TspRI	CASTG	4 cut(s)	114, 158, 174, 352
XapI	RAATTY	2 cut(s)	7, 300
XceI	RCATGY	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.