Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021612.1

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3952

Gene Structure 3952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

tacaatcccaacctaccccaactcctctttcactactccactctctctccacccaccaacccctcactgactctcagtcatatggagggtctcaaggagattcagaagctggagggccacactgacagggtgtggagcctcgcgtggaacccactctccggcctcgacggagccccccttaagctcgcttcatgcagcggcgataagaccgttcgtatttgggaacacaagccctccaactcctgggaatgccaggcagttctggatgatccgcacaccaggaccgtccgatcgtgcgcttggtcgccgtccgggaagctactggccactgccagcttcgatggcaccaccgcaatttttcaggacgttggggatgattatgaatgcgtttcgactctagagggtcatgaaaatgaagtgaagagtgtgtcttggaatgcgtctgggtctttgcttgcgacttgtgggagagataagacagtgtggatatgggaggtgttacccggcaatgagtttgagtgcgttgcggtgttgcaaggccatacacaagatgtgaaaatggttcagtggcatccgactatggagcttttgttttcgtgtagctatgacaacactgtcaagatatgggcggatgatggtgaggatgataattgggtgtgtgtgcaaacgttagctcaatctaacagtggtcactcttctactgtatgggctctatcgtttaatgctactggagacaaaatggttacctgcagtgatgatcttaccctaaagatatggggaacagacaatgggaagatgctatcttctgatggctttgcaccttggagtcatctttgcactgttgcgggttatcatgataggacaatattttcagttcattggtcaagggacaatatcattgccactggagctgctgatgatgccataagattctttgtggagaataatgagtgtgatactttggttgatggaccttcctataatttgcttctgaagaaggagaaggcccatgacatggatataaattcggtgcagtggagccctggggagaataggcttcttgcttctgcagctgatgacgggacgattaaaatatgggagctgacatctgtaagctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

373

Amino Acids

41.26

Weight (kDa)

4.74

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	344
AccB7I	CCANNNNNTGG	2 cut(s)	243, 1015
AccII	CGCG	1 cut(s)	143
AciI	CCGC	6 cut(s)	198, 272, 351, 527, 629, 845
AclI	AACGTT	1 cut(s)	668
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	1024
AcuI	CTGAAG	1 cut(s)	1013
AfiI	CCNNNNNNNGG	3 cut(s)	158, 243, 1015
AflII	CTTAAG	1 cut(s)	179
AhdI	GACNNNNNGTC	1 cut(s)	75
AjnI	CCWGG	4 cut(s)	242, 252, 278, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
Alw26I	GTCTC	2 cut(s)	95, 726
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	5 cut(s)	115, 160, 324, 538, 1005
ApeKI	GCWGC	4 cut(s)	195, 911, 1070, 1116
ApoI	RAATTY	1 cut(s)	1024
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	4 cut(s)	115, 282, 971, 1006
AsuC2I	CCSGG	2 cut(s)	313, 504
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	2 cut(s)	282, 971
BaeI	ACNNNNGTAYC	2 cut(s)	948, 981
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	3 cut(s)	175, 712, 1043
BbvI	GCAGC	4 cut(s)	207, 898, 1082, 1103
BccI	CCATC	4 cut(s)	335, 629, 803, 962
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	4 cut(s)	244, 254, 280, 1044
BcnI	CCSGG	2 cut(s)	313, 504
BcoDI	GTCTC	2 cut(s)	95, 726
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	748, 1068
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	755
BisI	GCNGC	5 cut(s)	196, 199, 912, 1071, 1117
BlsI	GCNGC	5 cut(s)	197, 200, 913, 1072, 1118
Bme1390I	CCNGG	6 cut(s)	244, 254, 280, 313, 504, 1044
Bme18I	GGWCC	2 cut(s)	282, 971
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmgT120I	GGNCC	4 cut(s)	115, 282, 971, 1006
BmiI	GGNNCC	5 cut(s)	137, 149, 172, 346, 1040
BmrFI	CCNGG	6 cut(s)	244, 254, 280, 313, 504, 1044
BmsI	GCATC	3 cut(s)	580, 786, 910
BpmI	CTGGAG	3 cut(s)	131, 750, 927
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	313, 504
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	243, 821, 1042, 1043
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 243, 1015
Bse1I	ACTGG	3 cut(s)	327, 733, 910
Bse3DI	GCAATG	2 cut(s)	514, 897
BseBI	CCWGG	4 cut(s)	244, 254, 280, 1044
BseDI	CCNNGG	4 cut(s)	243, 821, 1042, 1043
BseGI	GGATG	5 cut(s)	271, 379, 571, 637, 649
BseLI	CCNNNNNNNGG	3 cut(s)	158, 243, 1015
BseMI	GCAATG	2 cut(s)	514, 897
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	3 cut(s)	327, 733, 910
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	4 cut(s)	207, 898, 1082, 1103
BsgI	GTGCAG	1 cut(s)	1052
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	5 cut(s)	117, 162, 326, 540, 1007
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	159, 312, 504
BslFI	GGGAC	2 cut(s)	902, 1096
BslI	CCNNNNNNNGG	3 cut(s)	158, 243, 1015
BsmAI	GTCTC	2 cut(s)	95, 726
BsmFI	GGGAC	2 cut(s)	902, 1096
BsmI	GAATGC	3 cut(s)	254, 389, 442
BsnI	GGCC	5 cut(s)	117, 162, 326, 540, 1007
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	175, 712, 1043
Bsp143I	GATC	3 cut(s)	268, 290, 757
BspACI	CCGC	6 cut(s)	198, 272, 351, 527, 629, 845
BspANI	GGCC	5 cut(s)	117, 162, 326, 540, 1007
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	143
BspHI	TCATGA	2 cut(s)	406, 853
BspLI	GGNNCC	5 cut(s)	137, 149, 172, 346, 1040
BspMAI	CTGCAG	2 cut(s)	752, 1072
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	514, 897
BsrI	ACTGG	3 cut(s)	327, 733, 910
BssECI	CCNNGG	4 cut(s)	243, 821, 1042, 1043
BssMI	GATC	3 cut(s)	268, 290, 757
BssT1I	CCWWGG	1 cut(s)	821
Bst2UI	CCWGG	4 cut(s)	244, 254, 280, 1044
Bst4CI	ACNGT	7 cut(s)	211, 286, 481, 616, 686, 703, 841
Bst6I	CTCTTC	2 cut(s)	416, 700
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	186, 334, 456
BstDEI	CTNAG	1 cut(s)	74
BstEII	GGTNACC	1 cut(s)	742
BstF5I	GGATG	5 cut(s)	271, 379, 571, 637, 649
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	271, 293, 760
BstMAI	GTCTC	2 cut(s)	95, 726
BstMBI	GATC	3 cut(s)	268, 290, 757
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	342, 908, 920, 1070
BstNI	CCWGG	4 cut(s)	244, 254, 280, 1044
BstPI	GGTNACC	1 cut(s)	742
BstSCI	CCNGG	6 cut(s)	242, 252, 278, 311, 502, 1042
BstSFI	CTRYAG	2 cut(s)	748, 1068
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	207, 898, 1082, 1103
BsuRI	GGCC	5 cut(s)	117, 162, 326, 540, 1007
BtsCI	GGATG	5 cut(s)	271, 379, 571, 637, 649
BtsI	GCAGTG	3 cut(s)	327, 757, 1040
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	3 cut(s)	186, 334, 456
CaiI	CAGNNNCTG	1 cut(s)	109
CciI	TCATGA	2 cut(s)	406, 853
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	4 cut(s)	115, 282, 971, 1006
CseI	GACGC	1 cut(s)	429
CviAII	CATG	5 cut(s)	192, 407, 854, 1010, 1015
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	270, 292, 759
DpnII	GATC	3 cut(s)	268, 290, 757
DrdI	GACNNNNNNGTC	1 cut(s)	614
DriI	GACNNNNNGTC	1 cut(s)	75
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	416, 700
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	2 cut(s)	416, 700
EciI	GGCGGA	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	821
Eco24I	GRGCYC	3 cut(s)	175, 712, 1043
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	282, 971
Eco57I	CTGAAG	1 cut(s)	1013
Eco91I	GGTNACC	1 cut(s)	742
EcoO65I	GGTNACC	1 cut(s)	742
EcoRII	CCWGG	4 cut(s)	242, 252, 278, 1042
EcoT14I	CCWWGG	1 cut(s)	821
EcoT38I	GRGCYC	3 cut(s)	175, 712, 1043
ErhI	CCWWGG	1 cut(s)	821
FaeI	CATG	5 cut(s)	195, 410, 857, 1013, 1018
FaqI	GGGAC	2 cut(s)	902, 1096
FatI	CATG	5 cut(s)	191, 406, 853, 1009, 1014
FauI	CCCGC	1 cut(s)	838
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	196, 199, 912, 1071, 1117
FokI	GGATG	5 cut(s)	278, 386, 558, 644, 656
FriOI	GRGCYC	3 cut(s)	175, 712, 1043
Fsp4HI	GCNGC	5 cut(s)	196, 199, 912, 1071, 1117
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	196, 199, 912, 1071, 1117
GsuI	CTGGAG	3 cut(s)	131, 750, 927
HaeIII	GGCC	5 cut(s)	117, 162, 326, 540, 1007
HapII	CCGG	3 cut(s)	159, 312, 504
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	5 cut(s)	195, 410, 857, 1013, 1018
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	5 cut(s)	70, 100, 394, 826, 930
HpaII	CCGG	3 cut(s)	159, 312, 504
HphI	GGTGA	1 cut(s)	650
Hpy188I	TCNGA	5 cut(s)	105, 290, 576, 808, 993
Hpy188III	TCNNGA	6 cut(s)	263, 362, 398, 407, 619, 854
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	984, 991, 997
HpyCH4III	ACNGT	7 cut(s)	211, 286, 481, 616, 686, 703, 841
HpyCH4IV	ACGT	2 cut(s)	366, 668
HpyCH4V	TGCA	8 cut(s)	195, 535, 664, 750, 818, 837, 1033, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	342, 908, 920, 1070
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	2 cut(s)	366, 668
Hsp92II	CATG	5 cut(s)	195, 410, 857, 1013, 1018
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	268, 290, 757
LmnI	GCTCC	6 cut(s)	135, 170, 583, 908, 1038, 1099
Lsp1109I	GCAGC	4 cut(s)	207, 898, 1082, 1103
LweI	GCATC	3 cut(s)	580, 786, 910
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	366, 668
MaeIII	GTNAC	3 cut(s)	498, 689, 742
MalI	GATC	3 cut(s)	270, 292, 759
MboI	GATC	3 cut(s)	268, 290, 757
MboII	GAAGA	5 cut(s)	433, 687, 795, 805, 1006
MhlI	GDGCHC	3 cut(s)	175, 712, 1043
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	4 cut(s)	354, 649, 982, 1024
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	3 cut(s)	64, 388, 835
MmeI	TCCRAC	2 cut(s)	261, 599
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	180, 720, 1089
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	198, 1073
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	3 cut(s)	159, 312, 504
MspR9I	CCNGG	6 cut(s)	244, 254, 280, 313, 504, 1044
Mva1269I	GAATGC	3 cut(s)	254, 389, 442
MvaI	CCWGG	4 cut(s)	244, 254, 280, 1044
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	342, 908, 920, 1070
NciI	CCSGG	2 cut(s)	313, 504
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	3 cut(s)	268, 290, 757
NlaIII	CATG	5 cut(s)	195, 410, 857, 1013, 1018
NlaIV	GGNNCC	5 cut(s)	137, 149, 172, 346, 1040
NmuCI	GTSAC	1 cut(s)	689
PagI	TCATGA	2 cut(s)	406, 853
PasI	CCCWGGG	1 cut(s)	1043
PctI	GAATGC	3 cut(s)	254, 389, 442
PfeI	GAWTC	2 cut(s)	100, 930
PflMI	CCANNNNNTGG	2 cut(s)	243, 1015
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	5 cut(s)	197, 200, 913, 1072, 1118
Ple19I	CGATCG	1 cut(s)	293
PleI	GAGTC	3 cut(s)	64, 388, 834
PpsI	GAGTC	3 cut(s)	64, 388, 834
Psp1406I	AACGTT	1 cut(s)	668
Psp6I	CCWGG	4 cut(s)	242, 252, 278, 1042
PspEI	GGTNACC	1 cut(s)	742
PspGI	CCWGG	4 cut(s)	242, 252, 278, 1042
PspN4I	GGNNCC	5 cut(s)	137, 149, 172, 346, 1040
PspPI	GGNCC	4 cut(s)	115, 282, 971, 1006
PstI	CTGCAG	2 cut(s)	752, 1072
PstNI	CAGNNNCTG	1 cut(s)	109
PvuI	CGATCG	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	1073
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	180, 720, 1089
SatI	GCNGC	5 cut(s)	196, 199, 912, 1071, 1117
Sau3AI	GATC	3 cut(s)	268, 290, 757
Sau96I	GGNCC	4 cut(s)	115, 282, 971, 1006
SchI	GAGTC	3 cut(s)	64, 388, 835
ScrFI	CCNGG	6 cut(s)	244, 254, 280, 313, 504, 1044
SduI	GDGCHC	3 cut(s)	175, 712, 1043
SfaNI	GCATC	3 cut(s)	580, 786, 910
SfcI	CTRYAG	2 cut(s)	748, 1068
SinI	GGWCC	2 cut(s)	282, 971
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	92, 179
SmoI	CTYRAG	2 cut(s)	92, 179
Sse9I	AATT	4 cut(s)	354, 649, 982, 1024
SsiI	CCGC	6 cut(s)	198, 272, 351, 527, 629, 845
SspI	AATATT	1 cut(s)	867
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	6 cut(s)	242, 252, 278, 311, 502, 1042
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	7 cut(s)	211, 286, 481, 616, 686, 703, 841
TaiI	ACGT	2 cut(s)	369, 671
TaqI	TCGA	3 cut(s)	165, 339, 392
TasI	AATT	4 cut(s)	354, 649, 982, 1024
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	100, 930
Tru1I	TTAA	3 cut(s)	180, 720, 1089
Tru9I	TTAA	3 cut(s)	180, 720, 1089
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	4 cut(s)	195, 911, 1070, 1116
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	5 cut(s)	180, 396, 423, 429, 866
TspGWI	ACGGA	1 cut(s)	183
Van91I	CCANNNNNTGG	2 cut(s)	243, 1015
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	282, 971
XapI	RAATTY	1 cut(s)	1024
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.