Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Reverse (-)

2047103 .. 2050879

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02370.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGTTAGTAAAAGAGCTGCGAGAGATTCAGAAGCTAGAGGGCCACACTGATAGGGTCTGGAGCCTCGCCTGGAATCCGGCCACCGGTGTCGCCGGAATTCCACTTTCCTTCGCTTCCTGCAGCGGCGATAAGACCGTTCGTATTTGGGAACAAAACCCATCCACTTCTTCTTGGGATTGTAAGGCAGTTCTGGATGAAACGCACACCAGAACAGTCCGATCGTGCGCTTGGTCCCCATCTGGGAAGTTATTGGCGACTGCAAGTTTCGATGCCACCACTGCAATTTGGGAAAATGTTGGAGGCGATTACGAATGTGTTGCCAGTCTAGAGGGTCATGAAAACGAAGTGAAAAGTGTGTGTTGGAATGCATCTGGGTCTATGCTTACGACTTGCGGTCGGGATAAAACTGTATGGGTATGGGAAGCGCTGCCCGGGAATGAGTTCGACTGTGTTTCAGTGTTGCAAGGCCATACACAGGATGTGAAGATGGTCCAGTGGCATCCCACTAGAAATCTTATATTTTCTTGTAGCTATGATAACACTGTCAAGATATGGGCAGATGATGGTGATGATGATGATTGGTCGTGTGTTCAAACATTAGGTGAAGCTAACAATGGTCACTCTTCTACCGTCTGGGCTCTATCGTTTAATGCCAGTGGAGACAAAATGGTTACCTGCAGTGATGATCTTATTTTAAAGATATGGGGATCAGACGATGCAAAGATGTCTGCTGATGGCTTTGCTCCTTGGCGACATCTTTGCACTCTTTCAGGTTATCATGACCGGACAATATTTTCAGTTCATTGGTCAAGGGACAATATCATAGCCACTGGAGCTGCTGATGATGCCATAAAATTTTTTATGGAGAACAATGATCAAGATGGTTTGGTTGATGGACCTTCTTATAAATTGCTTTTGAGGAAGGAGAATGCCCATGACATGGATATCAATTCTGTGCAATGGAGCCCTGGGGAGGACCGGGTTCTTGCTTCTGCATCCGATGACGGGACGATTAAAATATGGGAGCTGACATCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

348

Amino Acids

38.46

Weight (kDa)

4.62

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
Acc36I	ACCTGC	1 cut(s)	686
AccB7I	CCANNNNNTGG	1 cut(s)	943
AciI	CCGC	2 cut(s)	126, 396
AclWI	GGATC	1 cut(s)	718
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	99, 857
AfeI	AGCGCT	1 cut(s)	429
AfiI	CCNNNNNNNGG	6 cut(s)	86, 243, 478, 943, 976, 1008
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	596
AhdI	GACNNNNNGTC	1 cut(s)	396
AjnI	CCWGG	2 cut(s)	71, 970
AluBI	AGCT	6 cut(s)	19, 37, 534, 611, 839, 1030
AluI	AGCT	6 cut(s)	19, 37, 534, 611, 839, 1030
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	3 cut(s)	43, 81, 469
ApeKI	GCWGC	4 cut(s)	19, 123, 430, 839
ApoI	RAATTY	2 cut(s)	99, 857
AsiGI	ACCGGT	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	230, 430
AspS9I	GGNCC	5 cut(s)	43, 234, 493, 899, 979
AsuC2I	CCSGG	3 cut(s)	435, 436, 983
AsuHPI	GGTGA	2 cut(s)	581, 617
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	4 cut(s)	234, 493, 899, 979
BanII	GRGCYC	2 cut(s)	643, 971
BbvI	GCAGC	4 cut(s)	6, 135, 417, 826
BccI	CCATC	7 cut(s)	169, 247, 484, 560, 731, 878, 890
BcgI	CGANNNNNNTGC	4 cut(s)	302, 336, 744, 778
BciT130I	CCWGG	2 cut(s)	73, 972
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	3 cut(s)	435, 436, 983
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	3 cut(s)	38, 329, 510
BfmI	CTRYAG	2 cut(s)	121, 679
BfoI	RGCGCY	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	686
BisI	GCNGC	5 cut(s)	20, 124, 127, 431, 840
BlsI	GCNGC	5 cut(s)	21, 125, 128, 432, 841
Bme1390I	CCNGG	5 cut(s)	73, 435, 436, 972, 983
Bme18I	GGWCC	4 cut(s)	234, 493, 899, 979
BmeRI	GACNNNNNGTC	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	5 cut(s)	43, 234, 493, 899, 979
BmiI	GGNNCC	3 cut(s)	65, 236, 968
BmrFI	CCNGG	5 cut(s)	73, 435, 436, 972, 983
BmsI	GCATC	6 cut(s)	262, 380, 511, 709, 838, 1007
BpmI	CTGGAG	2 cut(s)	82, 855
BpuMI	CCSGG	3 cut(s)	435, 436, 983
BsaJI	CCNNGG	4 cut(s)	434, 749, 970, 971
BsaWI	WCCGGW	2 cut(s)	86, 786
Bsc4I	CCNNNNNNNGG	6 cut(s)	86, 243, 478, 943, 976, 1008
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	324, 496, 657, 838
Bse3DI	GCAATG	1 cut(s)	968
BseBI	CCWGG	2 cut(s)	73, 972
BseDI	CCNNGG	4 cut(s)	434, 749, 970, 971
BseGI	GGATG	5 cut(s)	161, 202, 487, 502, 998
BseLI	CCNNNNNNNGG	6 cut(s)	86, 243, 478, 943, 976, 1008
BseMI	GCAATG	1 cut(s)	968
BseNI	ACTGG	4 cut(s)	324, 496, 657, 838
BseXI	GCAGC	4 cut(s)	6, 135, 417, 826
Bsh1285I	CGRYCG	2 cut(s)	224, 400
BshFI	GGCC	3 cut(s)	45, 83, 471
BshTI	ACCGGT	1 cut(s)	86
BsiEI	CGRYCG	2 cut(s)	224, 400
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	6 cut(s)	80, 87, 96, 435, 787, 982
BslFI	GGGAC	3 cut(s)	220, 830, 1024
BslI	CCNNNNNNNGG	6 cut(s)	86, 243, 478, 943, 976, 1008
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	3 cut(s)	220, 830, 1024
BsmI	GAATGC	2 cut(s)	373, 937
BsnI	GGCC	3 cut(s)	45, 83, 471
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	643, 971
Bsp143I	GATC	4 cut(s)	221, 688, 710, 877
BspACI	CCGC	2 cut(s)	126, 396
BspANI	GGCC	3 cut(s)	45, 83, 471
BspHI	TCATGA	2 cut(s)	337, 781
BspLI	GGNNCC	3 cut(s)	65, 236, 968
BspMAI	CTGCAG	2 cut(s)	125, 683
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	968
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	4 cut(s)	324, 496, 657, 838
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	4 cut(s)	434, 749, 970, 971
BssMI	GATC	4 cut(s)	221, 688, 710, 877
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	2 cut(s)	73, 972
Bst4CI	ACNGT	6 cut(s)	139, 217, 412, 452, 547, 634
Bst6I	CTCTTC	1 cut(s)	631
BstEII	GGTNACC	1 cut(s)	673
BstF5I	GGATG	5 cut(s)	161, 202, 487, 502, 998
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	2 cut(s)	230, 430
BstKTI	GATC	4 cut(s)	224, 691, 713, 880
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	4 cut(s)	221, 688, 710, 877
BstMCI	CGRYCG	2 cut(s)	224, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 836, 848
BstNI	CCWGG	2 cut(s)	73, 972
BstPI	GGTNACC	1 cut(s)	673
BstSCI	CCNGG	5 cut(s)	71, 433, 434, 970, 981
BstSFI	CTRYAG	2 cut(s)	121, 679
BstV1I	GCAGC	4 cut(s)	6, 135, 417, 826
BsuRI	GGCC	3 cut(s)	45, 83, 471
BtsCI	GGATG	5 cut(s)	161, 202, 487, 502, 998
BtsI	GCAGTG	2 cut(s)	279, 688
BtsIMutI	CAGTG	8 cut(s)	48, 279, 465, 503, 543, 664, 688, 831
BveI	ACCTGC	1 cut(s)	686
CciI	TCATGA	2 cut(s)	337, 781
CfoI	GCGC	2 cut(s)	230, 430
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	5 cut(s)	43, 234, 493, 899, 979
Cfr9I	CCCGGG	1 cut(s)	434
CspAI	ACCGGT	1 cut(s)	86
CviAII	CATG	4 cut(s)	338, 782, 938, 943
DpnI	GATC	4 cut(s)	223, 690, 712, 879
DpnII	GATC	4 cut(s)	221, 688, 710, 877
DraI	TTTAAA	1 cut(s)	699
DriI	GACNNNNNGTC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	2 cut(s)	643, 971
Eco32I	GATATC	1 cut(s)	949
Eco47I	GGWCC	4 cut(s)	234, 493, 899, 979
Eco47III	AGCGCT	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	673
EcoO65I	GGTNACC	1 cut(s)	673
EcoRI	GAATTC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	71, 970
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	749
EcoT22I	ATGCAT	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	643, 971
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	4 cut(s)	341, 785, 941, 946
FaqI	GGGAC	3 cut(s)	220, 830, 1024
FatI	CATG	4 cut(s)	337, 781, 937, 942
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	5 cut(s)	20, 124, 127, 431, 840
FokI	GGATG	5 cut(s)	148, 209, 489, 494, 985
FriOI	GRGCYC	2 cut(s)	643, 971
Fsp4HI	GCNGC	5 cut(s)	20, 124, 127, 431, 840
FspBI	CTAG	3 cut(s)	38, 329, 510
GlaI	GCGC	2 cut(s)	229, 429
GluI	GCNGC	5 cut(s)	20, 124, 127, 431, 840
GsuI	CTGGAG	2 cut(s)	82, 855
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	45, 83, 471
HapII	CCGG	6 cut(s)	80, 87, 96, 435, 787, 982
HhaI	GCGC	2 cut(s)	230, 430
Hin1II	CATG	4 cut(s)	341, 785, 941, 946
Hin6I	GCGC	2 cut(s)	228, 428
HinP1I	GCGC	2 cut(s)	228, 428
HinfI	GANTC	2 cut(s)	28, 76
HpaII	CCGG	6 cut(s)	80, 87, 96, 435, 787, 982
HphI	GGTGA	2 cut(s)	581, 617
Hpy188I	TCNGA	5 cut(s)	33, 221, 715, 1003, 1039
Hpy188III	TCNNGA	8 cut(s)	61, 194, 329, 338, 401, 550, 782, 881
HpyAV	CCTTC	3 cut(s)	121, 912, 919
HpyCH4III	ACNGT	6 cut(s)	139, 217, 412, 452, 547, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 836, 848
Hsp92II	CATG	4 cut(s)	341, 785, 941, 946
HspAI	GCGC	2 cut(s)	228, 428
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	4 cut(s)	221, 688, 710, 877
LmnI	GCTCC	5 cut(s)	63, 751, 836, 966, 1027
Lsp1109I	GCAGC	4 cut(s)	6, 135, 417, 826
LweI	GCATC	6 cut(s)	262, 380, 511, 709, 838, 1007
MaeI	CTAG	3 cut(s)	38, 329, 510
MaeIII	GTNAC	2 cut(s)	620, 673
MalI	GATC	4 cut(s)	223, 690, 712, 879
MboI	GATC	4 cut(s)	221, 688, 710, 877
MboII	GAAGA	3 cut(s)	162, 499, 618
MhlI	GDGCHC	2 cut(s)	643, 971
MluCI	AATT	5 cut(s)	99, 285, 857, 911, 952
MmeI	TCCRAC	2 cut(s)	280, 344
MnlI	CCTC	6 cut(s)	34, 77, 296, 325, 915, 970
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	3 cut(s)	651, 698, 1017
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	6 cut(s)	80, 87, 96, 435, 787, 982
MspR9I	CCNGG	5 cut(s)	73, 435, 436, 972, 983
Mva1269I	GAATGC	2 cut(s)	373, 937
MvaI	CCWGG	2 cut(s)	73, 972
MwoI	GCNNNNNNNGC	3 cut(s)	281, 836, 848
NciI	CCSGG	3 cut(s)	435, 436, 983
NdeII	GATC	4 cut(s)	221, 688, 710, 877
NlaIII	CATG	4 cut(s)	341, 785, 941, 946
NlaIV	GGNNCC	3 cut(s)	65, 236, 968
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	1 cut(s)	373
PagI	TCATGA	2 cut(s)	337, 781
PasI	CCCWGGG	1 cut(s)	971
PctI	GAATGC	2 cut(s)	373, 937
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	28, 76
PflMI	CCANNNNNTGG	1 cut(s)	943
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	21, 125, 128, 432, 841
Ple19I	CGATCG	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	909
Psp6I	CCWGG	2 cut(s)	71, 970
PspEI	GGTNACC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	71, 970
PspN4I	GGNNCC	3 cut(s)	65, 236, 968
PspPI	GGNCC	5 cut(s)	43, 234, 493, 899, 979
PstI	CTGCAG	2 cut(s)	125, 683
PvuI	CGATCG	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	651, 698, 1017
SatI	GCNGC	5 cut(s)	20, 124, 127, 431, 840
Sau3AI	GATC	4 cut(s)	221, 688, 710, 877
Sau96I	GGNCC	5 cut(s)	43, 234, 493, 899, 979
ScrFI	CCNGG	5 cut(s)	73, 435, 436, 972, 983
SduI	GDGCHC	2 cut(s)	643, 971
SfaNI	GCATC	6 cut(s)	262, 380, 511, 709, 838, 1007
SfcI	CTRYAG	2 cut(s)	121, 679
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	4 cut(s)	234, 493, 899, 979
SmaI	CCCGGG	1 cut(s)	436
Sse9I	AATT	5 cut(s)	99, 285, 857, 911, 952
SsiI	CCGC	2 cut(s)	126, 396
SspI	AATATT	1 cut(s)	795
SspMI	CTAG	3 cut(s)	38, 329, 510
StyD4I	CCNGG	5 cut(s)	71, 433, 434, 970, 981
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	6 cut(s)	139, 217, 412, 452, 547, 634
TaqI	TCGA	2 cut(s)	270, 447
TasI	AATT	5 cut(s)	99, 285, 857, 911, 952
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	28, 76
Tru1I	TTAA	3 cut(s)	651, 698, 1017
Tru9I	TTAA	3 cut(s)	651, 698, 1017
TscAI	CASTG	8 cut(s)	55, 286, 465, 503, 550, 664, 688, 838
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	4 cut(s)	19, 123, 430, 839
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	3 cut(s)	213, 354, 794
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	8 cut(s)	55, 286, 465, 503, 550, 664, 688, 838
Van91I	CCANNNNNTGG	1 cut(s)	943
VpaK11BI	GGWCC	4 cut(s)	234, 493, 899, 979
XapI	RAATTY	2 cut(s)	99, 857
XbaI	TCTAGA	1 cut(s)	328
XmaI	CCCGGG	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	3 cut(s)	38, 329, 510
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.