Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Forward (+)

59139 .. 62583

Gene Structure 3445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggagggtctcaaggagattcagaagctggagggccacactgacagggtgtggagcctcgcgtggaacccactctccggcctcgacggagccccccttaagctcgcttcatgcagcggcgataagaccgttcgtatttgggaacacaagccctccaactcctgggaatgccaggcagttctggatgatccgcacaccaggaccgtccgatcgtgcgcttggtcgccgtccgggaagctactggccactgccagcttcgatggcaccaccgcaatttttcaggacgttggggatgattatgaatgcgtttcgactctagagggtcatgaaaatgaagtgaagagtgtgtcttggaatgcgtctgggtctttgcttgcgacttgtgggagagataagaccgtgtggatatgggaggtgttacccggcaatgagtttgagtgcgttgcggtgttgcaaggccatacacaagatgtgaaaatggttcagtggcatccgactatggagcttttgttttcgtgtagctatgacaacactgtcaagatatgggcggatgatggtgaggatgataattgggtgtgtgtgcaaacgttagctcaatctaacagtggtcactcttctactgtatgggctctatcgtttaatgctactggagacaaaatggttacctgcagtgatgatcttaccctaaagatatggggaacagacaatgggaagatgctatcttctgatggctttgcaccttggagtcatctttgcactgttgcgggttatcatgataggacaatattttcagttcattggtcaagggacaatatcattgccactggagctgctgatgatgccataagattctttgtggagaataatgagtgtgataatttggagaataggcttcttgcttctgcagctgatgacgggacgattaaaatatgggagctgacatctgtaagctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

318

Amino Acids

35.12

Weight (kDa)

4.61

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	117, 191, 270, 446, 548, 764
AclI	AACGTT	1 cut(s)	587
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	77, 162
AflII	CTTAAG	1 cut(s)	98
AjnI	CCWGG	3 cut(s)	161, 171, 197
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
Alw26I	GTCTC	2 cut(s)	14, 645
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	34, 79, 243, 457
ApeKI	GCWGC	4 cut(s)	114, 830, 905, 951
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	34, 201
AsuC2I	CCSGG	2 cut(s)	232, 423
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	94, 631
BbvI	GCAGC	4 cut(s)	126, 817, 917, 938
BccI	CCATC	3 cut(s)	254, 548, 722
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	3 cut(s)	163, 173, 199
BcnI	CCSGG	2 cut(s)	232, 423
BcoDI	GTCTC	2 cut(s)	14, 645
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	667, 903
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	5 cut(s)	115, 118, 831, 906, 952
BlsI	GCNGC	5 cut(s)	116, 119, 832, 907, 953
Bme1390I	CCNGG	5 cut(s)	163, 173, 199, 232, 423
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	34, 201
BmiI	GGNNCC	4 cut(s)	56, 68, 91, 265
BmrFI	CCNGG	5 cut(s)	163, 173, 199, 232, 423
BmsI	GCATC	3 cut(s)	499, 705, 829
BpmI	CTGGAG	3 cut(s)	50, 669, 846
BpuMI	CCSGG	2 cut(s)	232, 423
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	162, 740
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 137, 167, 494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 162
Bse1I	ACTGG	3 cut(s)	246, 652, 829
Bse3DI	GCAATG	2 cut(s)	433, 816
BseBI	CCWGG	3 cut(s)	163, 173, 199
BseDI	CCNNGG	2 cut(s)	162, 740
BseGI	GGATG	5 cut(s)	190, 298, 490, 556, 568
BseLI	CCNNNNNNNGG	2 cut(s)	77, 162
BseMI	GCAATG	2 cut(s)	433, 816
BseNI	ACTGG	3 cut(s)	246, 652, 829
BseXI	GCAGC	4 cut(s)	126, 817, 917, 938
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	4 cut(s)	36, 81, 245, 459
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	78, 231, 423
BslFI	GGGAC	2 cut(s)	821, 931
BslI	CCNNNNNNNGG	2 cut(s)	77, 162
BsmAI	GTCTC	2 cut(s)	14, 645
BsmFI	GGGAC	2 cut(s)	821, 931
BsmI	GAATGC	3 cut(s)	173, 308, 361
BsnI	GGCC	4 cut(s)	36, 81, 245, 459
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	94, 631
Bsp143I	GATC	3 cut(s)	187, 209, 676
BspACI	CCGC	6 cut(s)	117, 191, 270, 446, 548, 764
BspANI	GGCC	4 cut(s)	36, 81, 245, 459
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	2 cut(s)	325, 772
BspLI	GGNNCC	4 cut(s)	56, 68, 91, 265
BspMAI	CTGCAG	2 cut(s)	671, 907
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	433, 816
BsrI	ACTGG	3 cut(s)	246, 652, 829
BssECI	CCNNGG	2 cut(s)	162, 740
BssMI	GATC	3 cut(s)	187, 209, 676
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	3 cut(s)	163, 173, 199
Bst4CI	ACNGT	7 cut(s)	130, 205, 400, 535, 605, 622, 760
Bst6I	CTCTTC	2 cut(s)	335, 619
BstAFI	CTTAAG	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	105, 253, 375
BstEII	GGTNACC	1 cut(s)	661
BstF5I	GGATG	5 cut(s)	190, 298, 490, 556, 568
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	190, 212, 679
BstMAI	GTCTC	2 cut(s)	14, 645
BstMBI	GATC	3 cut(s)	187, 209, 676
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 827, 839, 905
BstNI	CCWGG	3 cut(s)	163, 173, 199
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	5 cut(s)	161, 171, 197, 230, 421
BstSFI	CTRYAG	2 cut(s)	667, 903
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	126, 817, 917, 938
BsuRI	GGCC	4 cut(s)	36, 81, 245, 459
BtsCI	GGATG	5 cut(s)	190, 298, 490, 556, 568
BtsI	GCAGTG	2 cut(s)	246, 676
BtsIMutI	CAGTG	8 cut(s)	39, 246, 491, 531, 610, 676, 756, 822
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	3 cut(s)	105, 253, 375
CaiI	CAGNNNCTG	1 cut(s)	28
CciI	TCATGA	2 cut(s)	325, 772
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	34, 201
CseI	GACGC	1 cut(s)	348
CviAII	CATG	3 cut(s)	111, 326, 773
DpnI	GATC	3 cut(s)	189, 211, 678
DpnII	GATC	3 cut(s)	187, 209, 676
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	335, 619
EarI	CTCTTC	2 cut(s)	335, 619
EciI	GGCGGA	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	2 cut(s)	94, 631
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	661
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	3 cut(s)	161, 171, 197
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	2 cut(s)	94, 631
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	3 cut(s)	114, 329, 776
FaqI	GGGAC	2 cut(s)	821, 931
FatI	CATG	3 cut(s)	110, 325, 772
FauI	CCCGC	1 cut(s)	757
Fnu4HI	GCNGC	5 cut(s)	115, 118, 831, 906, 952
FokI	GGATG	5 cut(s)	197, 305, 477, 563, 575
FriOI	GRGCYC	2 cut(s)	94, 631
Fsp4HI	GCNGC	5 cut(s)	115, 118, 831, 906, 952
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	5 cut(s)	115, 118, 831, 906, 952
GsuI	CTGGAG	3 cut(s)	50, 669, 846
HaeIII	GGCC	4 cut(s)	36, 81, 245, 459
HapII	CCGG	3 cut(s)	78, 231, 423
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	114, 329, 776
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	19, 313, 745, 849
HpaII	CCGG	3 cut(s)	78, 231, 423
HphI	GGTGA	1 cut(s)	569
Hpy188I	TCNGA	4 cut(s)	24, 209, 495, 727
Hpy188III	TCNNGA	6 cut(s)	182, 281, 317, 326, 538, 773
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	7 cut(s)	130, 205, 400, 535, 605, 622, 760
HpyCH4IV	ACGT	2 cut(s)	285, 587
HpyCH4V	TGCA	7 cut(s)	114, 454, 583, 669, 737, 756, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 827, 839, 905
HpySE526I	ACGT	2 cut(s)	285, 587
Hsp92II	CATG	3 cut(s)	114, 329, 776
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	187, 209, 676
LmnI	GCTCC	5 cut(s)	54, 89, 502, 827, 934
Lsp1109I	GCAGC	4 cut(s)	126, 817, 917, 938
LweI	GCATC	3 cut(s)	499, 705, 829
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	285, 587
MaeIII	GTNAC	3 cut(s)	417, 608, 661
MalI	GATC	3 cut(s)	189, 211, 678
MboI	GATC	3 cut(s)	187, 209, 676
MboII	GAAGA	4 cut(s)	352, 606, 714, 724
MhlI	GDGCHC	2 cut(s)	94, 631
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	3 cut(s)	273, 568, 877
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	307, 754
MmeI	TCCRAC	2 cut(s)	180, 518
MnlI	CCTC	7 cut(s)	25, 68, 92, 163, 313, 406, 553
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	3 cut(s)	99, 639, 924
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	117, 908
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	3 cut(s)	78, 231, 423
MspR9I	CCNGG	5 cut(s)	163, 173, 199, 232, 423
Mva1269I	GAATGC	3 cut(s)	173, 308, 361
MvaI	CCWGG	3 cut(s)	163, 173, 199
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	261, 827, 839, 905
NciI	CCSGG	2 cut(s)	232, 423
NdeII	GATC	3 cut(s)	187, 209, 676
NlaIII	CATG	3 cut(s)	114, 329, 776
NlaIV	GGNNCC	4 cut(s)	56, 68, 91, 265
NmuCI	GTSAC	1 cut(s)	608
PagI	TCATGA	2 cut(s)	325, 772
PctI	GAATGC	3 cut(s)	173, 308, 361
PfeI	GAWTC	2 cut(s)	19, 849
PflMI	CCANNNNNTGG	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	116, 119, 832, 907, 953
Ple19I	CGATCG	1 cut(s)	212
PleI	GAGTC	2 cut(s)	307, 753
PpsI	GAGTC	2 cut(s)	307, 753
Psp1406I	AACGTT	1 cut(s)	587
Psp6I	CCWGG	3 cut(s)	161, 171, 197
PspEI	GGTNACC	1 cut(s)	661
PspGI	CCWGG	3 cut(s)	161, 171, 197
PspN4I	GGNNCC	4 cut(s)	56, 68, 91, 265
PspPI	GGNCC	2 cut(s)	34, 201
PstI	CTGCAG	2 cut(s)	671, 907
PstNI	CAGNNNCTG	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	908
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	99, 639, 924
SatI	GCNGC	5 cut(s)	115, 118, 831, 906, 952
Sau3AI	GATC	3 cut(s)	187, 209, 676
Sau96I	GGNCC	2 cut(s)	34, 201
SchI	GAGTC	2 cut(s)	307, 754
ScrFI	CCNGG	5 cut(s)	163, 173, 199, 232, 423
SduI	GDGCHC	2 cut(s)	94, 631
SfaNI	GCATC	3 cut(s)	499, 705, 829
SfcI	CTRYAG	2 cut(s)	667, 903
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	11, 98
SmoI	CTYRAG	2 cut(s)	11, 98
Sse9I	AATT	3 cut(s)	273, 568, 877
SsiI	CCGC	6 cut(s)	117, 191, 270, 446, 548, 764
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	5 cut(s)	161, 171, 197, 230, 421
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	7 cut(s)	130, 205, 400, 535, 605, 622, 760
TaiI	ACGT	2 cut(s)	288, 590
TaqI	TCGA	3 cut(s)	84, 258, 311
TasI	AATT	3 cut(s)	273, 568, 877
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	19, 849
Tru1I	TTAA	3 cut(s)	99, 639, 924
Tru9I	TTAA	3 cut(s)	99, 639, 924
TscAI	CASTG	8 cut(s)	46, 253, 491, 538, 610, 676, 763, 829
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	114, 830, 905, 951
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	5 cut(s)	99, 315, 342, 348, 785
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	8 cut(s)	46, 253, 491, 538, 610, 676, 763, 829
Van91I	CCANNNNNTGG	1 cut(s)	162
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	201
XbaI	TCTAGA	1 cut(s)	316
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.