Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Reverse (-)

1679115 .. 1683120

Gene Structure 4006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02160.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATTCATATTGTCCTCGTAGAGCAGTCAAAACACAGCATTTATACGGTCAAATACTCTTCCTCGCCGACTCCTCATAGCTCACAGCCTCATTTGGCCATGGAGTTAGCGAAAGAGCTCCGAGAGATTCAGACGCTACAGGGCCACACCGATAGGGTATGGAGCCTCGCCTGGAATCCGGCCACCGGTGTCGCCGGAATCCCCCTTTCCTTCGCTTCCTGCAGCGGCGATAAGACCGTTCGTATTTGGGAACAAAACCCCTCAACTTCTTCTTGGGATTGCAAGGCAGTTCTGGATGAAACACACACGAGAACCGTCCGATCGTGCGCTTGGTCACCATCTGGGAAATTATTGGCCACTGCAAGCTTCGATGCCACTACTGCAATTTGGGAAAATGTTGGGGGCGATTATGAATGTGTTGCCAGTCTAGAGGGTCATGAAAACGAAGTGAAAAGTGTGTGTTGGAATCCATCTGGGTCTATGCTTACGACTTGCGGTCGAGATAAAACTGTATGGGTATGGGAAGTGCTGCCCGGGAACGAGTTCGACTGTGTGTCAGTTTTGCAAGGCCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACTAGGAATCTTATATTTTCTTGTAGCTATGATAACACTGTCAAGATATGGGCTGATGATGGTGACGATGATGATTGGGCATGTGTTCAAACCTTAGGTGAAACTAACAATGGTCACTCTTCTACTGTCTGGGCTCTATCATTTAATGCCAGTGGAGACAAGATAGTTACCTGCAGTGATGATCTTACTTTAAAGATATGGGGATCAGACGATACAAAGATGTCTGCTGATGGTTTTGCACCTTGGCGACATCTTTGCACTCTTTCAGGTTATCATGACCGGACAATATTTTCAGTTCATTGGTCAAGGGACAATATCATAGCCAGTGGAGCTGCAGATGATGCAATAAGATTTTTCGTGGAGAACGATGAACAAGATGGTTTGGTTGATGGGCCTTCATATAAATTGCTTTTGAGGAAGGAAAATGCCCATGACATGGATATCAATTCGGTGCAATGGAGCCCTGGGGAGGATCAGTTTCTTGCTTCTGCAGCCGATGACGGGACGATTAAAATATGGGAGCTGACATCTGATAGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

383

Amino Acids

42.33

Weight (kDa)

4.73

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	785
AccB7I	CCANNNNNTGG	1 cut(s)	1042
AciI	CCGC	2 cut(s)	225, 495
AclWI	GGATC	2 cut(s)	817, 1086
AcoI	YGGCCR	3 cut(s)	96, 180, 354
AfiI	CCNNNNNNNGG	4 cut(s)	185, 1042, 1075, 1107
AgeI	ACCGGT	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	695
AhdI	GACNNNNNGTC	2 cut(s)	495, 553
AjnI	CCWGG	2 cut(s)	170, 1069
AluBI	AGCT	7 cut(s)	81, 118, 366, 633, 938, 1129, 1143
AluI	AGCT	7 cut(s)	81, 118, 366, 633, 938, 1129, 1143
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	2 cut(s)	817, 1086
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	6 cut(s)	96, 142, 180, 354, 568, 998
ApeKI	GCWGC	5 cut(s)	222, 529, 938, 1097, 1143
AsiGI	ACCGGT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	142, 998
AsuC2I	CCSGG	2 cut(s)	534, 535
AsuHPI	GGTGA	3 cut(s)	327, 680, 716
AvaI	CYCGRG	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	700
BalI	TGGCCA	2 cut(s)	98, 356
BanII	GRGCYC	3 cut(s)	120, 742, 1070
BauI	CACGAG	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	5 cut(s)	234, 516, 925, 1109, 1130
BccI	CCATC	7 cut(s)	346, 478, 583, 659, 830, 977, 989
BcgI	CGANNNNNNTGC	2 cut(s)	843, 877
BciT130I	CCWGG	2 cut(s)	172, 1071
BcnI	CCSGG	2 cut(s)	534, 535
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	2 cut(s)	428, 609
BfmI	CTRYAG	5 cut(s)	137, 220, 778, 939, 1095
BfuAI	ACCTGC	1 cut(s)	785
BisI	GCNGC	6 cut(s)	223, 226, 530, 939, 1098, 1144
BlsI	GCNGC	6 cut(s)	224, 227, 531, 940, 1099, 1145
Bme1390I	CCNGG	4 cut(s)	172, 534, 535, 1071
BmeRI	GACNNNNNGTC	2 cut(s)	495, 553
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	142, 998
BmiI	GGNNCC	2 cut(s)	164, 1067
BmrFI	CCNGG	4 cut(s)	172, 534, 535, 1071
BmsI	GCATC	3 cut(s)	361, 610, 937
BpuMI	CCSGG	2 cut(s)	534, 535
BsaJI	CCNNGG	5 cut(s)	99, 533, 848, 1069, 1070
BsaWI	WCCGGW	2 cut(s)	185, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	1067, 1097
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 1042, 1075, 1107
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	3 cut(s)	423, 756, 930
Bse21I	CCTNAGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	1067
BseBI	CCWGG	2 cut(s)	172, 1071
BseDI	CCNNGG	5 cut(s)	99, 533, 848, 1069, 1070
BseGI	GGATG	2 cut(s)	301, 601
BseLI	CCNNNNNNNGG	4 cut(s)	185, 1042, 1075, 1107
BseMI	GCAATG	1 cut(s)	1067
BseNI	ACTGG	3 cut(s)	423, 756, 930
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	5 cut(s)	234, 516, 925, 1109, 1130
Bsh1285I	CGRYCG	2 cut(s)	323, 499
BshFI	GGCC	6 cut(s)	98, 144, 182, 356, 570, 1000
BshTI	ACCGGT	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	323, 499
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	5 cut(s)	179, 186, 195, 534, 886
BslFI	GGGAC	2 cut(s)	929, 1123
BslI	CCNNNNNNNGG	4 cut(s)	185, 1042, 1075, 1107
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	2 cut(s)	929, 1123
BsnI	GGCC	6 cut(s)	98, 144, 182, 356, 570, 1000
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	120, 742, 1070
Bsp143I	GATC	4 cut(s)	320, 787, 809, 1078
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	225, 495
BspANI	GGCC	6 cut(s)	98, 144, 182, 356, 570, 1000
BspHI	TCATGA	2 cut(s)	436, 880
BspLI	GGNNCC	2 cut(s)	164, 1067
BspMAI	CTGCAG	4 cut(s)	224, 782, 943, 1099
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	2 cut(s)	817, 1086
BsrDI	GCAATG	1 cut(s)	1067
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	423, 756, 930
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	5 cut(s)	99, 533, 848, 1069, 1070
BssMI	GATC	4 cut(s)	320, 787, 809, 1078
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	99, 848
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	172, 1071
Bst4CI	ACNGT	7 cut(s)	49, 238, 316, 511, 551, 646, 733
Bst6I	CTCTTC	2 cut(s)	64, 730
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	700
BstDSI	CCRYGG	1 cut(s)	99
BstEII	GGTNACC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	301, 601
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	323, 790, 812, 1081
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	4 cut(s)	320, 787, 809, 1078
BstMCI	CGRYCG	2 cut(s)	323, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 935, 947, 1097
BstNI	CCWGG	2 cut(s)	172, 1071
BstNSI	RCATGY	1 cut(s)	690
BstPI	GGTNACC	1 cut(s)	333
BstSCI	CCNGG	4 cut(s)	170, 532, 533, 1069
BstSFI	CTRYAG	5 cut(s)	137, 220, 778, 939, 1095
BstV1I	GCAGC	5 cut(s)	234, 516, 925, 1109, 1130
Bsu36I	CCTNAGG	1 cut(s)	700
BsuRI	GGCC	6 cut(s)	98, 144, 182, 356, 570, 1000
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	301, 601
BtsI	GCAGTG	2 cut(s)	357, 787
BtsIMutI	CAGTG	6 cut(s)	357, 602, 642, 763, 787, 937
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	1 cut(s)	364
CciI	TCATGA	2 cut(s)	436, 880
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	142, 998
Cfr9I	CCCGGG	1 cut(s)	533
CseI	GACGC	1 cut(s)	142
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	6 cut(s)	100, 437, 687, 881, 1037, 1042
DdeI	CTNAG	1 cut(s)	700
DpnI	GATC	4 cut(s)	322, 789, 811, 1080
DpnII	GATC	4 cut(s)	320, 787, 809, 1078
DraI	TTTAAA	1 cut(s)	798
DriI	GACNNNNNGTC	2 cut(s)	495, 553
EaeI	YGGCCR	3 cut(s)	96, 180, 354
Eam1104I	CTCTTC	2 cut(s)	64, 730
Eam1105I	GACNNNNNGTC	2 cut(s)	495, 553
EarI	CTCTTC	2 cut(s)	64, 730
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	99, 848
Eco24I	GRGCYC	3 cut(s)	120, 742, 1070
Eco32I	GATATC	1 cut(s)	1048
Eco53kI	GAGCTC	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	700
Eco88I	CYCGRG	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	170, 1069
EcoRV	GATATC	1 cut(s)	1048
EcoT14I	CCWWGG	2 cut(s)	99, 848
EcoT38I	GRGCYC	3 cut(s)	120, 742, 1070
ErhI	CCWWGG	2 cut(s)	99, 848
FaeI	CATG	6 cut(s)	103, 440, 690, 884, 1040, 1045
FaqI	GGGAC	2 cut(s)	929, 1123
FatI	CATG	6 cut(s)	99, 436, 686, 880, 1036, 1041
Fnu4HI	GCNGC	6 cut(s)	223, 226, 530, 939, 1098, 1144
FokI	GGATG	2 cut(s)	308, 588
FriOI	GRGCYC	3 cut(s)	120, 742, 1070
Fsp4HI	GCNGC	6 cut(s)	223, 226, 530, 939, 1098, 1144
FspBI	CTAG	2 cut(s)	428, 609
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	6 cut(s)	223, 226, 530, 939, 1098, 1144
HaeIII	GGCC	6 cut(s)	98, 144, 182, 356, 570, 1000
HapII	CCGG	5 cut(s)	179, 186, 195, 534, 886
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	6 cut(s)	103, 440, 690, 884, 1040, 1045
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	7 cut(s)	4, 70, 127, 175, 198, 466, 613
HpaII	CCGG	5 cut(s)	179, 186, 195, 534, 886
HphI	GGTGA	3 cut(s)	327, 680, 716
Hpy188I	TCNGA	5 cut(s)	122, 132, 320, 814, 1138
Hpy188III	TCNNGA	6 cut(s)	293, 428, 437, 500, 649, 881
HpyAV	CCTTC	3 cut(s)	220, 1011, 1018
HpyCH4III	ACNGT	7 cut(s)	49, 238, 316, 511, 551, 646, 733
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 935, 947, 1097
HpyF3I	CTNAG	1 cut(s)	700
Hsp92II	CATG	6 cut(s)	103, 440, 690, 884, 1040, 1045
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	320, 787, 809, 1078
LmnI	GCTCC	5 cut(s)	123, 162, 935, 1065, 1126
Lsp1109I	GCAGC	5 cut(s)	234, 516, 925, 1109, 1130
LweI	GCATC	3 cut(s)	361, 610, 937
MaeI	CTAG	2 cut(s)	428, 609
MaeIII	GTNAC	4 cut(s)	333, 668, 719, 772
MalI	GATC	4 cut(s)	322, 789, 811, 1080
MboI	GATC	4 cut(s)	320, 787, 809, 1078
MboII	GAAGA	4 cut(s)	51, 261, 598, 717
MhlI	GDGCHC	3 cut(s)	120, 742, 1070
MlsI	TGGCCA	2 cut(s)	98, 356
MluCI	AATT	4 cut(s)	347, 384, 1010, 1051
MluNI	TGGCCA	2 cut(s)	98, 356
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	9 cut(s)	26, 73, 84, 99, 176, 271, 424, 1014, 1069
Mox20I	TGGCCA	2 cut(s)	98, 356
MroXI	GAANNNNTTC	1 cut(s)	542
MscI	TGGCCA	2 cut(s)	98, 356
MseI	TTAA	3 cut(s)	750, 797, 1116
Msp20I	TGGCCA	2 cut(s)	98, 356
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	5 cut(s)	179, 186, 195, 534, 886
MspR9I	CCNGG	4 cut(s)	172, 534, 535, 1071
MvaI	CCWGG	2 cut(s)	172, 1071
MwoI	GCNNNNNNNGC	4 cut(s)	380, 935, 947, 1097
NciI	CCSGG	2 cut(s)	534, 535
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	4 cut(s)	320, 787, 809, 1078
NlaIII	CATG	6 cut(s)	103, 440, 690, 884, 1040, 1045
NlaIV	GGNNCC	2 cut(s)	164, 1067
NmuCI	GTSAC	3 cut(s)	333, 668, 719
NspI	RCATGY	1 cut(s)	690
PagI	TCATGA	2 cut(s)	436, 880
PasI	CCCWGGG	1 cut(s)	1070
PcsI	WCGNNNNNNNCGW	1 cut(s)	969
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	6 cut(s)	4, 127, 175, 198, 466, 613
PflMI	CCANNNNNTGG	1 cut(s)	1042
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	6 cut(s)	224, 227, 531, 940, 1099, 1145
Ple19I	CGATCG	1 cut(s)	323
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	170, 1069
PspEI	GGTNACC	1 cut(s)	333
PspGI	CCWGG	2 cut(s)	170, 1069
PspN4I	GGNNCC	2 cut(s)	164, 1067
PspPI	GGNCC	2 cut(s)	142, 998
PstI	CTGCAG	4 cut(s)	224, 782, 943, 1099
PvuI	CGATCG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	750, 797, 1116
SatI	GCNGC	6 cut(s)	223, 226, 530, 939, 1098, 1144
Sau3AI	GATC	4 cut(s)	320, 787, 809, 1078
Sau96I	GGNCC	2 cut(s)	142, 998
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	4 cut(s)	172, 534, 535, 1071
SduI	GDGCHC	3 cut(s)	120, 742, 1070
SfaNI	GCATC	3 cut(s)	361, 610, 937
SfcI	CTRYAG	5 cut(s)	137, 220, 778, 939, 1095
SgrAI	CRCCGGYG	1 cut(s)	185
SmaI	CCCGGG	1 cut(s)	535
Sse9I	AATT	4 cut(s)	347, 384, 1010, 1051
SsiI	CCGC	2 cut(s)	225, 495
SspI	AATATT	1 cut(s)	894
SspMI	CTAG	2 cut(s)	428, 609
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	4 cut(s)	170, 532, 533, 1069
StyI	CCWWGG	2 cut(s)	99, 848
TaaI	ACNGT	7 cut(s)	49, 238, 316, 511, 551, 646, 733
TaqI	TCGA	3 cut(s)	369, 499, 546
TasI	AATT	4 cut(s)	347, 384, 1010, 1051
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	6 cut(s)	4, 127, 175, 198, 466, 613
Tru1I	TTAA	3 cut(s)	750, 797, 1116
Tru9I	TTAA	3 cut(s)	750, 797, 1116
TscAI	CASTG	6 cut(s)	364, 602, 649, 763, 787, 937
TseFI	GTSAC	3 cut(s)	333, 668, 719
TseI	GCWGC	5 cut(s)	222, 529, 938, 1097, 1143
Tsp45I	GTSAC	3 cut(s)	333, 668, 719
TspDTI	ATGAA	6 cut(s)	312, 426, 453, 893, 990, 993
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	6 cut(s)	364, 602, 649, 763, 787, 937
Van91I	CCANNNNNTGG	1 cut(s)	1042
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	690
XmaI	CCCGGG	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	2 cut(s)	428, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.