Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Forward (+)

30788564 .. 30793711

Gene Structure 5148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGATTCTGGATGATCCGCACACCAGGACCGTCCGATCGTGCGCTTGGTCGCCGTCCGGGAAGCTACTGGCCACTGCCAGCTTCGACGGCACCACCGCAATTTTTCAGGACGTTGGGGATGATTATGATTGTTGATGCCTTCACGGTTGATGGACCTTCCTATAATTTGCTTCTGAAGAAGGAGAAGGCCCATGACATGGATATAAATTCGGTGCAGTGGAGCCCTGGGGAGAATAGGCTTCTTGCTTCTGCAGCTGATGACGGGACGATTAAAATATGGGAGCTGACATCTTCGATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

102

Amino Acids

11.34

Weight (kDa)

8.12

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	59 - 98	6.6e-07	WDR5 beta-propeller domain
WD40	PF00400	61 - 94	9.1e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	62 - 98	1.1e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	199
AciI	CCGC	2 cut(s)	19, 98
AclWI	GGATC	1 cut(s)	10
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	25, 226
AluBI	AGCT	4 cut(s)	66, 83, 257, 286
AluI	AGCT	4 cut(s)	66, 83, 257, 286
AlwI	GGATC	1 cut(s)	10
AoxI	GGCC	2 cut(s)	71, 189
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	29, 155, 190
AsuC2I	CCSGG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	29, 155
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	2 cut(s)	39, 105
BciT130I	CCWGG	2 cut(s)	27, 228
BcnI	CCSGG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	3 cut(s)	27, 60, 228
Bme18I	GGWCC	2 cut(s)	29, 155
BmgT120I	GGNCC	3 cut(s)	29, 155, 190
BmiI	GGNNCC	2 cut(s)	93, 224
BmrFI	CCNGG	3 cut(s)	27, 60, 228
BmsI	GCATC	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	226, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	27, 228
BseDI	CCNNGG	2 cut(s)	226, 227
BseGI	GGATG	2 cut(s)	18, 126
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	73, 191
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	73, 191
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	15, 37
BspACI	CCGC	2 cut(s)	19, 98
BspANI	GGCC	2 cut(s)	73, 191
BspLI	GGNNCC	2 cut(s)	93, 224
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	226, 227
BssMI	GATC	2 cut(s)	15, 37
Bst2UI	CCWGG	2 cut(s)	27, 228
Bst4CI	ACNGT	2 cut(s)	33, 148
BstC8I	GCNNGC	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	18, 126
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	18, 40
BstMBI	GATC	2 cut(s)	15, 37
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 254
BstNI	CCWGG	2 cut(s)	27, 228
BstSCI	CCNGG	3 cut(s)	25, 58, 226
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	73, 191
BtsCI	GGATG	2 cut(s)	18, 126
BtsI	GCAGTG	2 cut(s)	74, 224
BtsIMutI	CAGTG	2 cut(s)	74, 224
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	29, 155, 190
CviAII	CATG	2 cut(s)	194, 199
CviJI	RGCY	8 cut(s)	66, 73, 83, 191, 225, 241, 257, 286
CviKI_1	RGCY	8 cut(s)	66, 73, 83, 191, 225, 241, 257, 286
DpnI	GATC	2 cut(s)	17, 39
DpnII	GATC	2 cut(s)	15, 37
EaeI	YGGCCR	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	29, 155
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	25, 226
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	2 cut(s)	197, 202
FaiI	YATR	6 cut(s)	128, 165, 195, 200, 206, 280
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	193, 198
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	25, 133
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	255
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	73, 191
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	197, 202
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	37, 177
Hpy188III	TCNNGA	2 cut(s)	10, 109
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	151, 168, 175, 181
HpyCH4III	ACNGT	2 cut(s)	33, 148
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	217, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 254
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	197, 202
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	15, 37
LmnI	GCTCC	2 cut(s)	222, 283
LpnPI	CCDG	8 cut(s)	12, 39, 55, 72, 93, 94, 213, 240
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	113
MalI	GATC	2 cut(s)	17, 39
MboI	GATC	2 cut(s)	15, 37
MboII	GAAGA	2 cut(s)	190, 285
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	3 cut(s)	101, 166, 208
MluNI	TGGCCA	1 cut(s)	73
Mox20I	TGGCCA	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	27, 60, 228
MvaI	CCWGG	2 cut(s)	27, 228
MwoI	GCNNNNNNNGC	2 cut(s)	89, 254
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	15, 37
NlaIII	CATG	2 cut(s)	197, 202
NlaIV	GGNNCC	2 cut(s)	93, 224
PasI	CCCWGGG	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	256
Ple19I	CGATCG	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	25, 226
PspGI	CCWGG	2 cut(s)	25, 226
PspN4I	GGNNCC	2 cut(s)	93, 224
PspPI	GGNCC	3 cut(s)	29, 155, 190
PstI	CTGCAG	1 cut(s)	256
PvuI	CGATCG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	15, 37
Sau96I	GGNCC	3 cut(s)	29, 155, 190
ScrFI	CCNGG	3 cut(s)	27, 60, 228
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	6 cut(s)	68, 85, 116, 160, 259, 288
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	29, 155
Sse9I	AATT	3 cut(s)	101, 166, 208
SsiI	CCGC	2 cut(s)	19, 98
StyD4I	CCNGG	3 cut(s)	25, 58, 226
TaaI	ACNGT	2 cut(s)	33, 148
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	86, 296
TasI	AATT	3 cut(s)	101, 166, 208
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	81, 224
TseI	GCWGC	1 cut(s)	254
TspRI	CASTG	2 cut(s)	81, 224
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	29, 155
XapI	RAATTY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.