Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007416

Physical Location & Seq

Genomic Coordinates Reverse (-)

4261200 .. 4261763

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAGTTATCAAAATCCGATCCTACCTTACCTCTCGCGTCCCTCTTCCTTGCTCTGCCATCTCACTGGTTCTCTCCCTCCCGTCTCACTCGTTCACTCCCAACTCGTCGCCCCAAACCCAATCCCCAACCTCAAACTTCATTCACAGCTTAATCTTTGAAATCACTCCAGTTTTTTTTATAGTAGTGCAACAAATGCAGGAGAGCATTCACATAGTCAAATCCTCTGCCTCGCGGTCGTCGACTCCTCAAAGCTCACAGCCTCACTTGGCCATGGAGTTAGCAAAAGAGCTGCGTGAGATTCGGACGCTACGGGGCCACACCGATAGGGTATGGAGCCTCGCCTGGAATCCAGCCACTGGTGTCGCCGGAATCCCCCTTTCCTTCCCTTCTCTTCCTGCAGCGGCGATAAGACCGTTTGTATTTGGGAACAAAACCCCTCCACTTCTTCTTGGGACTGTAAGCAGTTCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032991 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051186 GO:0071840 GO:0097361

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

159

Amino Acids

17.16

Weight (kDa)

10.57

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26060 AT2G26060 AT4G32990 AT4G32990
fragaria_vesca	FvH4_6g18650
malus_domestica	MD12G1035900.v1.1 MD14G1022600.v1.1
prunus_persica	Prupe.7G110600_v2.0.a1 Prupe.7G110600_v2.0.a1
pyrus_communis	pycom08g05600 pycom12g02370 pycom14g02160
rosa_chinensis	RchiOBHm_Chr3g0473611
rosa_laevigata	RLG00000024000
rosa_multiflora	Rmu_sc0003069.1_g000012 Rmu_sc0021612.1_g000001 Rmu_sc0033628.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408020
rosa_rugosa	Rorug03G0133100
rosa_samantha	Rh3AG184700 Rh3BG212700 Rh3CG209500 Rh3DG208800
rosa_wichuraiana	Rw3G015950 Rw3G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	2 cut(s)	39, 235
AciI	CCGC	2 cut(s)	235, 404
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	150, 255, 292
AluI	AGCT	3 cut(s)	150, 255, 292
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	270, 316
ApeKI	GCWGC	2 cut(s)	292, 401
AspS9I	GGNCC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	279, 413
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	3 cut(s)	293, 402, 405
BlsI	GCNGC	3 cut(s)	294, 403, 406
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	317, 338
BmrFI	CCNGG	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	72, 170, 364
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseNI	ACTGG	3 cut(s)	72, 170, 364
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	279, 413
Bsh1236I	CGCG	2 cut(s)	39, 235
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	272, 318
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	26, 469
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	26, 469
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	272, 318
Bsp143I	GATC	1 cut(s)	20
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	2 cut(s)	235, 404
BspANI	GGCC	2 cut(s)	272, 318
BspFNI	CGCG	2 cut(s)	39, 235
BspLI	GGNNCC	2 cut(s)	317, 338
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	15
BsrI	ACTGG	3 cut(s)	72, 170, 364
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	417, 460
Bst6I	CTCTTC	2 cut(s)	51, 399
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	273
BstFNI	CGCG	2 cut(s)	39, 235
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	2 cut(s)	39, 235
BstV1I	GCAGC	2 cut(s)	279, 413
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	272, 318
BtgI	CCRYGG	1 cut(s)	273
BtsIMutI	CAGTG	2 cut(s)	65, 357
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	2 cut(s)	28, 316
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	8 cut(s)	150, 255, 262, 272, 292, 318, 339, 356
CviKI_1	RGCY	8 cut(s)	150, 255, 262, 272, 292, 318, 339, 356
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	51, 399
EarI	CTCTTC	2 cut(s)	51, 399
Eco130I	CCWWGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	182, 215, 275, 334
FaqI	GGGAC	2 cut(s)	26, 469
FatI	CATG	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	293, 402, 405
Fsp4HI	GCNGC	3 cut(s)	293, 402, 405
GluI	GCNGC	3 cut(s)	293, 402, 405
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	272, 318
HapII	CCGG	1 cut(s)	369
HgaI	GACGC	2 cut(s)	28, 316
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	4 cut(s)	244, 301, 349, 372
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	96, 243
Hpy188I	TCNGA	2 cut(s)	20, 306
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	2 cut(s)	96, 243
Hpy99I	CGWCG	2 cut(s)	112, 244
HpyAV	CCTTC	2 cut(s)	394, 399
HpyCH4III	ACNGT	2 cut(s)	417, 460
HpyCH4V	TGCA	3 cut(s)	190, 199, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	279, 413
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	3 cut(s)	38, 386, 440
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	238
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	2 cut(s)	39, 235
MwoI	GCNNNNNNNGC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	317, 338
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	301, 349, 372
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	294, 403, 406
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	317, 338
PspPI	GGNCC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	3 cut(s)	293, 402, 405
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	6 cut(s)	30, 35, 134, 152, 257, 294
SfcI	CTRYAG	1 cut(s)	399
SsiI	CCGC	2 cut(s)	235, 404
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	417, 460
TaqI	TCGA	1 cut(s)	242
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	3 cut(s)	301, 349, 372
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	2 cut(s)	72, 364
TseI	GCWGC	2 cut(s)	292, 401
TspDTI	ATGAA	2 cut(s)	17, 130
TspRI	CASTG	2 cut(s)	72, 364
Van91I	CCANNNNNTGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.