Prupe.7G113600_v2.0.a1

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
13934011 .. 13939184
5174 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G113600.1

Sequence Viewer

Length: 1404 bp
ATGGACCAACAAAACTCCACCAGCTCCTCCACAACCCCAACTCCAACTCCAACTCCCTCCACCTCTCAACAACCACCCTCTGAACCACCAACCCAATCCCAACCTCAACCTCCACCTCAATCTCAGCTTCCCCCACCTTCCTCAACAGCTTCTTCAACCCCAACCCCAATCCCTCCGTCCCCAAACCCTAACCCTAACCCTAAACCCTCAACCCCAGTAACCCCACAACCCCAACAACCCCAACCCCAACCCCAGTCTAGGCCTCCCTCCACATTGGCTCGCCCCTGGCCGCAGTCCCACTTCGCCCACTTCCCATCGCCTTCTTCTTCGGCTTCGTCTGGGCCTCCCCCTCCGCCCTCGTCCTCCGCGCCTCCCCCGCCGAGGGGCAGCATTGCCATTGGTGTTCCTGCGCACCACCCTAGCCCTTCTCCTCCTCAACCCGCTCCCTTCTCGTCCTCTTATGGCCAGCATTTTGGTGGCCTGGGCCGGGGCGGTGCCGCTGTGCCTGAACCCGTATCCAATTCCAGTGCTTCCCAGGTGAGACCGTCTGTGCAAGGAATGCAAGGAATGGCGATGATGGGTTCACTCGGTTCAAGTTCTCAAATGCGGCCAGCTGGGGTTAGTGCACAACATCCACAGAGACCTGTCCAATCCTCTTTTAGACCACCATCTACCGCAAGTAGTCAGTCCCCGTCTTCCCAAAATTTCCAAGGACACAGCCTTTTACGAGTTTCTTCAGTAGGAACTCCTAGTACATCACCAAATACATCTCAAGGTTTGCAGCCTCATACTCAGCCATGGTTGTCATCTGGGTCACAAGGGAAGCCTCCTATACCGTCCCCTTCATATAGGCAGCATATGAGCTCACCATCCATGCAGCAAAGATCACATGTTCAGCAGCAACAGCACCATCCCCTTCCTACTGCTTCACAGCAACAGCACCATCCCCTTCCTACAGCTCCACAGCAACAGCACCATCCCCTGCCTTCAGCTTCACAGCAAACAGCACCATCCCCCTGCCTTCAGCTTCACCGCAACAGCACCATCCCCTGCCTTCAGCGTCACAGCAACAGCACCATCCCGTGCCTTCAGCTTCACAGCAACAGCACCATCCTCTGCCTTCAGCTTCACAGCAACAGCATACATCACCGGCGCAGCAGCAACAACCTTCTTCGTCGCATCAGGGACCCGAGCATTTTGGGCAACACGTTCAACCATCAAGGATCCCACAAACAACCCCCCGTCAAATTACAAGGGTCCAGAACCTGGCAAACCAGAAGTCTTCCTCTCCTGCATCAGTACAGCCTAACACAGTCCAATCAGGGCCCCAAAATAAAAGTGCTAGTGCAGAAACGGATGAATCTTGTAATAGAATTCTTAGCAAAAGAAGCATCCATGAGTTAG

Protein Analysis

468

Amino Acids

49.85

Weight (kDa)

11.72

Isoelectric Point (pI)

93.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 1266
AccBSI CCGCTC 1 cut(s) 443
AccII CGCG 1 cut(s) 368
AclWI GGATC 2 cut(s) 1218, 1231
AcoI YGGCCR 3 cut(s) 287, 463, 608
AcsI RAATTY 2 cut(s) 703, 1373
AcuI CTGAAG 6 cut(s) 720, 972, 1007, 1040, 1073, 1106
AfaI GTAC 2 cut(s) 754, 1301
AfiI CCNNNNNNNGG 6 cut(s) 258, 381, 382, 383, 487, 1266
AflIII ACRYGT 2 cut(s) 889, 1206
AgsI TTSAA 3 cut(s) 156, 594, 1213
AjnI CCWGG 4 cut(s) 284, 480, 534, 1265
Alw21I GWGCWC 2 cut(s) 628, 866
Alw26I GTCTC 2 cut(s) 535, 634
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 2 cut(s) 1218, 1231
AlwNI CAGNNNCTG 1 cut(s) 1266
Ama87I CYCGRG 1 cut(s) 1189
AoxI GGCC 8 cut(s) 260, 287, 341, 463, 478, 484, 608, 1324
ApaI GGGCCC 1 cut(s) 1328
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 7 cut(s) 387, 781, 853, 877, 898, 1155, 1158
ApoI RAATTY 2 cut(s) 703, 1373
ArsI GACNNNNNNTTYG 2 cut(s) 1264, 1296
AspLEI GCGC 3 cut(s) 370, 412, 1155
AspS9I GGNCC 7 cut(s) 4, 341, 484, 1186, 1257, 1324, 1325
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 5 cut(s) 550, 750, 858, 1022, 1139
AvaI CYCGRG 1 cut(s) 1189
AvaII GGWCC 3 cut(s) 4, 1186, 1257
BaeGI GKGCMC 2 cut(s) 628, 1328
BalI TGGCCA 1 cut(s) 465
BamHI GGATCC 1 cut(s) 1223
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 2 cut(s) 866, 1328
BbsI GAAGAC 2 cut(s) 687, 1274
Bbv12I GWGCWC 2 cut(s) 628, 866
BbvI GCAGC 7 cut(s) 399, 793, 865, 889, 910, 1167, 1170
BciT130I CCWGG 4 cut(s) 286, 482, 536, 1267
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 535, 634
BfaI CTAG 4 cut(s) 258, 420, 750, 1343
BfmI CTRYAG 1 cut(s) 954
BfuI GTATCC 1 cut(s) 526
Bme1390I CCNGG 5 cut(s) 286, 482, 488, 536, 1267
Bme18I GGWCC 3 cut(s) 4, 1186, 1257
BmeT110I CYCGRG 1 cut(s) 1189
BmgT120I GGNCC 7 cut(s) 4, 341, 484, 1186, 1257, 1324, 1325
BmiI GGNNCC 7 cut(s) 496, 1187, 1188, 1225, 1258, 1326, 1327
BmrFI CCNGG 5 cut(s) 286, 482, 488, 536, 1267
BmrI ACTGGG 2 cut(s) 209, 247
BmsI GCATC 3 cut(s) 1188, 1303, 1400
BmuI ACTGGG 2 cut(s) 209, 247
BpiI GAAGAC 2 cut(s) 687, 1274
BpuEI CTTGAG 1 cut(s) 756
BpuMI CCSGG 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 535, 634
BsaJI CCNNGG 7 cut(s) 284, 380, 481, 487, 534, 709, 797
BsaXI ACNNNNNCTCC 6 cut(s) 25, 31, 37, 55, 61, 67
Bsc4I CCNNNNNNNGG 6 cut(s) 258, 381, 382, 383, 487, 1266
Bse118I RCCGGY 1 cut(s) 1149
Bse1I ACTGG 3 cut(s) 215, 253, 525
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 4 cut(s) 286, 482, 536, 1267
BseDI CCNNGG 7 cut(s) 284, 380, 481, 487, 534, 709, 797
BseLI CCNNNNNNNGG 6 cut(s) 258, 381, 382, 383, 487, 1266
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 137, 806
BseNI ACTGG 3 cut(s) 215, 253, 525
BseRI GAGGAG 3 cut(s) 16, 420, 423
BseSI GKGCMC 2 cut(s) 628, 1328
BseXI GCAGC 7 cut(s) 399, 793, 865, 889, 910, 1167, 1170
BseYI CCCAGC 1 cut(s) 614
BsgI GTGCAG 1 cut(s) 1367
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 8 cut(s) 262, 289, 343, 465, 480, 486, 610, 1326
BshNI GGYRCC 1 cut(s) 494
BsiHKAI GWGCWC 2 cut(s) 628, 866
BsiHKCI CYCGRG 1 cut(s) 1189
BsiSI CCGG 2 cut(s) 487, 1150
BslFI GGGAC 5 cut(s) 163, 280, 673, 823, 1199
BslI CCNNNNNNNGG 6 cut(s) 258, 381, 382, 383, 487, 1266
BsmAI GTCTC 2 cut(s) 535, 634
BsmFI GGGAC 5 cut(s) 163, 280, 673, 823, 1199
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 8 cut(s) 262, 289, 343, 465, 480, 486, 610, 1326
Bso31I GGTCTC 2 cut(s) 535, 634
BsoBI CYCGRG 1 cut(s) 1189
Bsp120I GGGCCC 1 cut(s) 1324
Bsp1286I GDGCHC 3 cut(s) 628, 866, 1328
Bsp143I GATC 2 cut(s) 884, 1223
Bsp19I CCATGG 1 cut(s) 797
BspANI GGCC 8 cut(s) 262, 289, 343, 465, 480, 486, 610, 1326
BspCNI CTCAG 2 cut(s) 136, 805
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 7 cut(s) 496, 1187, 1188, 1225, 1258, 1326, 1327
BspPI GGATC 2 cut(s) 1218, 1231
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 2 cut(s) 535, 634
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 1149
BsrI ACTGG 3 cut(s) 215, 253, 525
BssAI RCCGGY 1 cut(s) 1149
BssECI CCNNGG 7 cut(s) 284, 380, 481, 487, 534, 709, 797
BssMI GATC 2 cut(s) 884, 1223
BssT1I CCWWGG 2 cut(s) 709, 797
Bst2UI CCWGG 4 cut(s) 286, 482, 536, 1267
Bst4CI ACNGT 3 cut(s) 546, 837, 1314
BstAPI GCANNNNNTGC 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 280, 467, 612
BstDEI CTNAG 3 cut(s) 123, 792, 1378
BstDSI CCRYGG 1 cut(s) 797
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 3 cut(s) 370, 412, 1155
BstKTI GATC 2 cut(s) 887, 1226
BstMAI GTCTC 2 cut(s) 535, 634
BstMBI GATC 2 cut(s) 884, 1223
BstMWI GCNNNNNNNGC 5 cut(s) 376, 559, 904, 1200, 1388
BstNI CCWGG 4 cut(s) 286, 482, 536, 1267
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 5 cut(s) 284, 480, 486, 534, 1265
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 2 cut(s) 628, 1328
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 7 cut(s) 399, 793, 865, 889, 910, 1167, 1170
BstV2I GAAGAC 2 cut(s) 687, 1274
BstX2I RGATCY 1 cut(s) 1223
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 8 cut(s) 262, 289, 343, 465, 480, 486, 610, 1326
BtgI CCRYGG 1 cut(s) 797
BtgZI GCGATG 2 cut(s) 300, 587
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 280, 467, 612
CaiI CAGNNNCTG 1 cut(s) 1266
CfoI GCGC 3 cut(s) 370, 412, 1155
Cfr10I RCCGGY 1 cut(s) 1149
Cfr13I GGNCC 7 cut(s) 4, 341, 484, 1186, 1257, 1324, 1325
CseI GACGC 1 cut(s) 1049
Csp6I GTAC 2 cut(s) 753, 1300
CviAII CATG 4 cut(s) 798, 874, 890, 1396
CviQI GTAC 2 cut(s) 753, 1300
DdeI CTNAG 3 cut(s) 123, 792, 1378
DpnI GATC 2 cut(s) 886, 1225
DpnII GATC 2 cut(s) 884, 1223
EaeI YGGCCR 3 cut(s) 287, 463, 608
EciI GGCGGA 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 864
Eco130I CCWWGG 2 cut(s) 709, 797
Eco147I AGGCCT 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 866, 1328
Eco31I GGTCTC 2 cut(s) 535, 634
Eco47I GGWCC 3 cut(s) 4, 1186, 1257
Eco53kI GAGCTC 1 cut(s) 864
Eco57I CTGAAG 6 cut(s) 720, 972, 1007, 1040, 1073, 1106
Eco88I CYCGRG 1 cut(s) 1189
EcoICRI GAGCTC 1 cut(s) 864
EcoO109I RGGNCCY 3 cut(s) 1186, 1324, 1325
EcoRI GAATTC 1 cut(s) 1373
EcoRII CCWGG 4 cut(s) 284, 480, 534, 1265
EcoT14I CCWWGG 2 cut(s) 709, 797
EcoT38I GRGCYC 2 cut(s) 866, 1328
ErhI CCWWGG 2 cut(s) 709, 797
FaeI CATG 4 cut(s) 801, 877, 893, 1399
FaqI GGGAC 5 cut(s) 163, 280, 673, 823, 1199
FatI CATG 4 cut(s) 797, 873, 889, 1395
FauI CCCGC 2 cut(s) 384, 448
FauNDI CATATG 1 cut(s) 858
FriOI GRGCYC 2 cut(s) 866, 1328
FspBI CTAG 4 cut(s) 258, 420, 750, 1343
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 3 cut(s) 369, 411, 1154
GsaI CCCAGC 1 cut(s) 618
HaeIII GGCC 8 cut(s) 262, 289, 343, 465, 480, 486, 610, 1326
HapII CCGG 2 cut(s) 487, 1150
HgaI GACGC 1 cut(s) 1049
HhaI GCGC 3 cut(s) 370, 412, 1155
Hin1II CATG 4 cut(s) 801, 877, 893, 1399
Hin6I GCGC 3 cut(s) 368, 410, 1153
HinP1I GCGC 3 cut(s) 368, 410, 1153
HinfI GANTC 1 cut(s) 1360
HpaII CCGG 2 cut(s) 487, 1150
HphI GGTGA 5 cut(s) 550, 750, 858, 1022, 1139
Hpy166II GTNNAC 2 cut(s) 584, 626
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 1260
Hpy8I GTNNAC 2 cut(s) 584, 626
Hpy99I CGWCG 1 cut(s) 1179
HpyCH4III ACNGT 3 cut(s) 546, 837, 1314
HpyCH4IV ACGT 1 cut(s) 1208
HpyCH4V TGCA 7 cut(s) 553, 562, 626, 781, 877, 1294, 1348
HpyF10VI GCNNNNNNNGC 5 cut(s) 376, 559, 904, 1200, 1388
HpyF3I CTNAG 3 cut(s) 123, 792, 1378
HpySE526I ACGT 1 cut(s) 1208
Hsp92II CATG 4 cut(s) 801, 877, 893, 1399
HspAI GCGC 3 cut(s) 368, 410, 1153
KflI GGGWCCC 1 cut(s) 1186
Kzo9I GATC 2 cut(s) 884, 1223
LmnI GCTCC 3 cut(s) 29, 448, 964
Lsp1109I GCAGC 7 cut(s) 399, 793, 865, 889, 910, 1167, 1170
LweI GCATC 3 cut(s) 1188, 1303, 1400
MaeI CTAG 4 cut(s) 258, 420, 750, 1343
MaeII ACGT 1 cut(s) 1208
MaeIII GTNAC 3 cut(s) 217, 813, 1061
MalI GATC 2 cut(s) 886, 1225
MbiI CCGCTC 1 cut(s) 443
MboI GATC 2 cut(s) 884, 1223
MboII GAAGA 7 cut(s) 144, 315, 318, 687, 726, 1163, 1274
MflI RGATCY 1 cut(s) 1223
MhlI GDGCHC 3 cut(s) 628, 866, 1328
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 4 cut(s) 520, 703, 1247, 1373
MluNI TGGCCA 1 cut(s) 465
MmeI TCCRAC 2 cut(s) 68, 74
Mox20I TGGCCA 1 cut(s) 465
MscI TGGCCA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 465
MspA1I CMGCKG 2 cut(s) 500, 614
MspI CCGG 2 cut(s) 487, 1150
MspR9I CCNGG 5 cut(s) 286, 482, 488, 536, 1267
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 4 cut(s) 286, 482, 536, 1267
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 5 cut(s) 376, 559, 904, 1200, 1388
NciI CCSGG 1 cut(s) 488
NcoI CCATGG 1 cut(s) 797
NdeI CATATG 1 cut(s) 858
NdeII GATC 2 cut(s) 884, 1223
NlaIII CATG 4 cut(s) 801, 877, 893, 1399
NlaIV GGNNCC 7 cut(s) 496, 1187, 1188, 1225, 1258, 1326, 1327
NmeAIII GCCGAG 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 813, 1061
NsbI TGCGCA 1 cut(s) 411
NspI RCATGY 1 cut(s) 893
PceI AGGCCT 1 cut(s) 262
PciI ACATGT 1 cut(s) 889
PctI GAATGC 1 cut(s) 564
PfeI GAWTC 1 cut(s) 1360
PflMI CCANNNNNTGG 1 cut(s) 1266
PpuMI RGGWCCY 1 cut(s) 1186
PscI ACATGT 1 cut(s) 889
Psp124BI GAGCTC 1 cut(s) 866
Psp5II RGGWCCY 1 cut(s) 1186
Psp6I CCWGG 4 cut(s) 284, 480, 534, 1265
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 4 cut(s) 284, 480, 534, 1265
PspN4I GGNNCC 7 cut(s) 496, 1187, 1188, 1225, 1258, 1326, 1327
PspOMI GGGCCC 1 cut(s) 1324
PspPI GGNCC 7 cut(s) 4, 341, 484, 1186, 1257, 1324, 1325
PspPPI RGGWCCY 1 cut(s) 1186
PsrI GAACNNNNNNTAC 2 cut(s) 736, 768
PstNI CAGNNNCTG 1 cut(s) 1266
PsuI RGATCY 1 cut(s) 1223
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 754, 1301
RsaNI GTAC 2 cut(s) 753, 1300
RseI CAYNNNNRTG 1 cut(s) 474
SacI GAGCTC 1 cut(s) 866
Sau3AI GATC 2 cut(s) 884, 1223
Sau96I GGNCC 7 cut(s) 4, 341, 484, 1186, 1257, 1324, 1325
ScrFI CCNGG 5 cut(s) 286, 482, 488, 536, 1267
SduI GDGCHC 3 cut(s) 628, 866, 1328
SfaNI GCATC 3 cut(s) 1188, 1303, 1400
SfcI CTRYAG 1 cut(s) 954
SgrAI CRCCGGYG 1 cut(s) 1149
SinI GGWCC 3 cut(s) 4, 1186, 1257
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 771
SmoI CTYRAG 1 cut(s) 771
Sse9I AATT 4 cut(s) 520, 703, 1247, 1373
SseBI AGGCCT 1 cut(s) 262
SspMI CTAG 4 cut(s) 258, 420, 750, 1343
SstI GAGCTC 1 cut(s) 866
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 5 cut(s) 284, 480, 486, 534, 1265
StyI CCWWGG 2 cut(s) 709, 797
TaaI ACNGT 3 cut(s) 546, 837, 1314
TaiI ACGT 1 cut(s) 1211
TasI AATT 4 cut(s) 520, 703, 1247, 1373
TatI WGTACW 2 cut(s) 752, 1299
TauI GCSGC 3 cut(s) 292, 500, 610
TfiI GAWTC 1 cut(s) 1360
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 2 cut(s) 813, 1061
TseI GCWGC 7 cut(s) 387, 781, 853, 877, 898, 1155, 1158
Tsp45I GTSAC 2 cut(s) 813, 1061
TspDTI ATGAA 2 cut(s) 834, 1373
TspGWI ACGGA 2 cut(s) 165, 1369
TspRI CASTG 1 cut(s) 532
Van91I CCANNNNNTGG 1 cut(s) 1266
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 3 cut(s) 4, 1186, 1257
XapI RAATTY 2 cut(s) 703, 1373
XceI RCATGY 1 cut(s) 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XspI CTAG 4 cut(s) 258, 420, 750, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.