Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

10407940 .. 10408656

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCTCACGAGGTACACGATGAAGGTGGTATGCTGATGCCGCCGATGCCACCGATGCCGATGACTCCACCGCCAACAAAGCCTACGGGCGACCTGAGCAACACATCTGATTATTCCATGATCATGAACAACAGCCTCTACTGGGGCAAAAACGTTACCATACTCTTTTCCGGCTGGCCGGGGCATGACCACCTCGGCATGTACGTCTTGTCTCTCTCCTTCCTCTTCCTCCTCGCCGTCGTCGTCGAGATTCTTTCCGTGGGGCCTACCCTGAAGCCGACCGCCACTCCTCTAGTCTCCGGGGTCACTCAGACGGGTATTTATGCACTGCGCACCGTTTTGGCTTACTTGGTCATGCTATCTGTCATGTCCTTCAATGTTGGAATCCTCATAGCCGTGGTGGCTGGGCATGCCCTAGGTTTCTTTGTCGTCAAGGTTCGTGCGCTTAATCAGCTCCCCAGCCAAGCCGACTCGACCGATCCGCTCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

164

Amino Acids

17.64

Weight (kDa)

6.15

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	98 - 143	9.5e-11	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	484
AciI	CCGC	4 cut(s)	41, 71, 282, 482
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	15, 203
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw26I	GTCTC	3 cut(s)	9, 216, 301
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	2 cut(s)	176, 263
AspA2I	CCTAGG	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	333, 445
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	2 cut(s)	180, 301
AvrII	CCTAGG	1 cut(s)	415
BauI	CACGAG	1 cut(s)	8
BceAI	ACGGC	2 cut(s)	221, 380
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	180, 301
BcoDI	GTCTC	3 cut(s)	9, 216, 301
BfaI	CTAG	2 cut(s)	293, 416
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	180, 301
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	180, 301
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	27, 36, 45
BmuI	ACTGGG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	180, 301
BsaJI	CCNNGG	6 cut(s)	179, 193, 258, 300, 396, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	6 cut(s)	179, 193, 258, 300, 396, 415
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	86, 323
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	221, 279
BseYI	CCCAGC	2 cut(s)	404, 458
Bsh1285I	CGRYCG	2 cut(s)	282, 477
BshFI	GGCC	2 cut(s)	178, 265
BsiEI	CGRYCG	2 cut(s)	282, 477
BsiSI	CCGG	3 cut(s)	171, 179, 300
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	3 cut(s)	9, 216, 301
BsnI	GGCC	2 cut(s)	178, 265
Bsp143I	GATC	2 cut(s)	120, 478
BspACI	CCGC	4 cut(s)	41, 71, 282, 482
BspANI	GGCC	2 cut(s)	178, 265
BspCNI	CTCAG	2 cut(s)	87, 322
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	6 cut(s)	179, 193, 258, 300, 396, 415
BssMI	GATC	2 cut(s)	120, 478
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	176, 411
BstDEI	CTNAG	2 cut(s)	95, 309
BstDSI	CCRYGG	2 cut(s)	258, 396
BstHHI	GCGC	2 cut(s)	333, 445
BstKTI	GATC	2 cut(s)	123, 481
BstMAI	GTCTC	3 cut(s)	9, 216, 301
BstMBI	GATC	2 cut(s)	120, 478
BstMCI	CGRYCG	2 cut(s)	282, 477
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 46, 55, 79, 96, 401, 410, 451
BstNSI	RCATGY	2 cut(s)	202, 413
BstSCI	CCNGG	2 cut(s)	178, 299
BsuRI	GGCC	2 cut(s)	178, 265
BtgI	CCRYGG	2 cut(s)	258, 396
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	176, 411
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	2 cut(s)	333, 445
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	14, 202
CviAII	CATG	7 cut(s)	118, 124, 185, 199, 355, 367, 410
CviQI	GTAC	2 cut(s)	14, 202
DdeI	CTNAG	2 cut(s)	95, 309
DpnI	GATC	2 cut(s)	122, 480
DpnII	GATC	2 cut(s)	120, 478
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
FatI	CATG	7 cut(s)	117, 123, 184, 198, 354, 366, 409
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	293, 416
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 444
GluI	GCNGC	1 cut(s)	41
GsaI	CCCAGC	2 cut(s)	408, 462
HaeIII	GGCC	2 cut(s)	178, 265
HapII	CCGG	3 cut(s)	171, 179, 300
HhaI	GCGC	2 cut(s)	333, 445
Hin1II	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
Hin6I	GCGC	2 cut(s)	331, 443
HinP1I	GCGC	2 cut(s)	331, 443
HinfI	GANTC	4 cut(s)	64, 250, 384, 470
HpaII	CCGG	3 cut(s)	171, 179, 300
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	109, 312
Hpy188III	TCNNGA	3 cut(s)	8, 124, 247
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	3 cut(s)	242, 245, 248
HpyAV	CCTTC	3 cut(s)	17, 229, 382
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	153, 204
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 46, 55, 79, 96, 401, 410, 451
HpyF3I	CTNAG	2 cut(s)	95, 309
HpySE526I	ACGT	2 cut(s)	153, 204
Hsp92II	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
HspAI	GCGC	2 cut(s)	331, 443
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	120, 478
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	9 cut(s)	107, 127, 160, 184, 192, 284, 313, 390, 472
LweI	GCATC	3 cut(s)	27, 36, 45
MaeI	CTAG	2 cut(s)	293, 416
MaeII	ACGT	2 cut(s)	153, 204
MaeIII	GTNAC	2 cut(s)	154, 304
MalI	GATC	2 cut(s)	122, 480
MbiI	CCGCTC	1 cut(s)	484
MboI	GATC	2 cut(s)	120, 478
MboII	GAAGA	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	58, 464
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	4, 146, 203, 233, 239, 242, 300, 398
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	2 cut(s)	122, 395
MspI	CCGG	3 cut(s)	171, 179, 300
MspR9I	CCNGG	2 cut(s)	180, 301
MwoI	GCNNNNNNNGC	8 cut(s)	40, 46, 55, 79, 96, 401, 410, 451
NciI	CCSGG	2 cut(s)	180, 301
NdeII	GATC	2 cut(s)	120, 478
NlaIII	CATG	7 cut(s)	121, 127, 188, 202, 358, 370, 413
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	2 cut(s)	202, 413
PaeI	GCATGC	1 cut(s)	413
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 201, 240
PfeI	GAWTC	2 cut(s)	250, 384
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	2 cut(s)	58, 464
PpsI	GAGTC	2 cut(s)	58, 464
Psp1406I	AACGTT	1 cut(s)	153
PspFI	CCCAGC	2 cut(s)	404, 458
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	15, 203
RsaNI	GTAC	2 cut(s)	14, 202
RseI	CAYNNNNRTG	2 cut(s)	122, 395
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	120, 478
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	58, 464
ScrFI	CCNGG	2 cut(s)	180, 301
SetI	ASST	9 cut(s)	15, 28, 96, 156, 195, 207, 421, 438, 456
SfaNI	GCATC	3 cut(s)	27, 36, 45
SmiMI	CAYNNNNRTG	2 cut(s)	122, 395
SphI	GCATGC	1 cut(s)	413
SsiI	CCGC	4 cut(s)	41, 71, 282, 482
SspMI	CTAG	2 cut(s)	293, 416
StyD4I	CCNGG	2 cut(s)	178, 299
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	156, 207
TaqI	TCGA	2 cut(s)	246, 473
TaqII	GACCGA	1 cut(s)	491
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	250, 384
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	36, 140
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	333
XceI	RCATGY	2 cut(s)	202, 413
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	293, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.