Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Reverse (-)

10410087 .. 10416372

Gene Structure 6286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGGCTGTAATTGAAGCCGCCGCGCCACAGAAGCCGAAGAAAGAACCAACCGATGACGAAAAGAGGAGGATGAAAATAGTGGCCGGAAGCTTGATGAAAGCTGTGATCAGACCCGGTGGAGGTGATTCAACACCTTCAGATGGTGATCAGGTTATATATCATTGCACTGTTAGAACACTGGATGGAGTTATTGTTGAATCTTCAAGATCAGAATATGGAGGCAAGGGAATCCCCATACGAAGTGTTTTGGGAAAGAGCAAGATGATAGTTGGATTGCTAGAAGGACTTCCAACTATGCCCAAGGGTGAAATTGCAATGTTAAAAATGAAACCTCAAGTGCACTATGGTGAGGATGATTGCCCACTTTCAGCTCCCAGTGACTTTCCAAAGGATGATGAACTTCATTTTGAGATTGAGATGATAGATTTCTTCAAAGCCAAGGTTGTTAGTGATGACCTTGGAGTTGTGAAGAAGGTAATAACTGAAGGTCAGGGTTGGGAATCCCCAAGGGAACCTTATGAAGTAAAAGCCTGGATTTCTGCAAAGACTGGTGATGGGAAAGTGCTTGTTCCATGTACTCAAGGAGAACCGTTTTTCTTTAATTTTGGAAAGTCTGAGATACCTAAAGGTCTTGAGATGGGAATTGGTACAATGTCACGGCAAGAGAAGGCAGTAATATATGTCAGCAGTCAGTATTTGACTCCATCTCCTTTCCTGCCTGTGGTAGAAGGTGTTGAAGAAGTTCATTTTGAAGTGGAGCTTGTCCACTTTATTCAGGTGCGAGACATGCTTGGAGATGGGCGTCTGATTAAAAGGCGTATTCGTGATGGAAAAGGTGAGTTTCCTATGGATTGTCCTCTTCACGACAGCCTTCTACGAGTCCATTACAAGGGCATGATTCTTAATGAGGAAAAGACAATCTTCTTTGATACGAGAGTTAACAATAATGGTCAGCCTTTGGAGTTCTGTTCTGGAGAAGGCCTTGTGCCTGAGGGATTTGAAATGTGTGTTCGTTTGATGCTGCCTGGAGAGATAGCTCTGGTCACATGTCCTCCTGATTATGCATACGACAAGTTTGCTAGGCCTGCTAATGTTCCTGAAGGAGCTCATATTCAATGGGAAATCGAGCTTCTTGGTTTTGAAATGCCAAAGGATTGGACTGGTTTGGACTTTACAAGCATAATAGATGAAGCAGAGAAGATAAGAAATACAGGGAACAGGCTATTTAAAGAAGGAAAATTTGAACTTGCCAAGGCAAAGTATGACAAGGTGCTTCGGGAATTTAATCACGTTAATCCACAAGATGATGAAGAAGGGAAAACATTTTCAAACACGAGGAATTTGCTACATCTGAATGTGGCTGCATGCTACCTTAAAATGGGAGAATGCAGAAAATCCATTGAGACATGCAACAAGGTTATAGAGGCAAACCCTGGACATGTTAAGGCTCTCTACCGCCGTGGAATGGCCTTCATGGCTGCTGGAGATTTTGAGGAAGCAAAGAGTGACTTCAACAAGATGATACAACTTGACAAGTCGACGGAACCAGATGCAACAGCTGCTCTTCTAAAAGTGAAGCAGCAGGAACAGGAAGTTGAGAAGAAGCAACGGAAACAATTCAAGGGACTATTTGACAAGAAGCCGGGGGAAATTTCCGAGGTTGGAACCGAAGAAGATGGAGATAAGACTGCGGATGTAAATCAGAAGAATGATGATCAGGAGGAGGATTTAGATGAAGATACTTCGGAAACCTCTCGTGAAGTTGCGGGGAATGCAGCTCAAACATCAGCCCCCCAAACCACATTCGGGCCCAGATTACTTAGAGTCCTTGGACGGGTAGGATGGACCACCATGCTTTTCAATGTCACATTCGTCTTTGTTCTGGCCTATTTGCTGAACCTGTGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

636

Amino Acids

71.21

Weight (kDa)

5.22

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	42 - 140	3.4e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	167 - 255	4.5e-06	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	290 - 378	2.1e-15	FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_1	PF00515	481 - 512	2.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1538
AccII	CGCG	1 cut(s)	23
AciI	CCGC	5 cut(s)	18, 21, 1456, 1691, 1766
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	4 cut(s)	1238, 1280, 1339, 1650
AcuI	CTGAAG	3 cut(s)	120, 504, 1119
AcyI	GRCGYC	1 cut(s)	802
AfaI	GTAC	2 cut(s)	577, 649
AfiI	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
AflIII	ACRYGT	2 cut(s)	1046, 1438
AjnI	CCWGG	3 cut(s)	530, 1024, 1432
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	9 cut(s)	90, 101, 371, 760, 1037, 1106, 1129, 1559, 1778
AluI	AGCT	9 cut(s)	90, 101, 371, 760, 1037, 1106, 1129, 1559, 1778
Alw21I	GWGCWC	2 cut(s)	342, 1108
Alw26I	GTCTC	2 cut(s)	777, 1397
Alw44I	GTGCAC	1 cut(s)	338
AoxI	GGCC	6 cut(s)	81, 979, 1082, 1467, 1808, 1884
ApaI	GGGCCC	1 cut(s)	1812
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	6 cut(s)	1021, 1361, 1478, 1559, 1579, 1775
ApoI	RAATTY	4 cut(s)	1238, 1280, 1339, 1650
Asp700I	GAANNNNTTC	3 cut(s)	285, 741, 1616
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	1808, 1809, 1845
AsuC2I	CCSGG	2 cut(s)	114, 1644
AsuHPI	GGTGA	6 cut(s)	134, 155, 317, 359, 563, 848
AvaII	GGWCC	1 cut(s)	1845
AxyI	CCTNAGG	1 cut(s)	990
BaeGI	GKGCMC	2 cut(s)	342, 1812
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BanII	GRGCYC	2 cut(s)	1108, 1812
BauI	CACGAG	2 cut(s)	1333, 1755
Bbv12I	GWGCWC	2 cut(s)	342, 1108
BbvI	GCAGC	6 cut(s)	1008, 1348, 1465, 1546, 1591, 1787
BccI	CCATC	9 cut(s)	134, 176, 548, 631, 712, 791, 821, 1670, 1836
BceAI	ACGGC	2 cut(s)	674, 1443
BcgI	CGANNNNNNTGC	4 cut(s)	1058, 1092, 1324, 1358
BciT130I	CCWGG	3 cut(s)	532, 1026, 1434
BclI	TGATCA	3 cut(s)	105, 145, 1714
BcnI	CCSGG	2 cut(s)	114, 1644
BcoDI	GTCTC	2 cut(s)	777, 1397
BfaI	CTAG	2 cut(s)	278, 1080
BglI	GCCNNNNNGGC	1 cut(s)	1475
BisI	GCNGC	8 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580, 1776
BlsI	GCNGC	8 cut(s)	19, 22, 1023, 1363, 1480, 1561, 1581, 1777
Bme1390I	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
Bme18I	GGWCC	1 cut(s)	1845
BmgT120I	GGNCC	3 cut(s)	1808, 1809, 1845
BmiI	GGNNCC	4 cut(s)	513, 1545, 1666, 1810
BmrFI	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	1008, 1540
BmuI	ACTGGG	1 cut(s)	369
BpmI	CTGGAG	3 cut(s)	993, 1047, 1503
BpuEI	CTTGAG	3 cut(s)	318, 564, 653
BpuMI	CCSGG	2 cut(s)	114, 1644
BsaBI	GATNNNNATC	2 cut(s)	144, 1698
BsaHI	GRCGYC	1 cut(s)	802
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 691, 721, 1036, 1066
Bsc4I	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
Bse1I	ACTGG	4 cut(s)	183, 375, 553, 1165
Bse21I	CCTNAGG	1 cut(s)	990
Bse3DI	GCAATG	2 cut(s)	160, 321
Bse8I	GATNNNNATC	2 cut(s)	144, 1698
BseBI	CCWGG	3 cut(s)	532, 1026, 1434
BseGI	GGATG	6 cut(s)	75, 187, 358, 397, 1699, 1847
BseJI	GATNNNNATC	2 cut(s)	144, 1698
BseLI	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
BseMI	GCAATG	2 cut(s)	160, 321
BseMII	CTCAG	2 cut(s)	606, 981
BseNI	ACTGG	4 cut(s)	183, 375, 553, 1165
BseRI	GAGGAG	2 cut(s)	79, 1736
BseSI	GKGCMC	2 cut(s)	342, 1812
BseXI	GCAGC	6 cut(s)	1008, 1348, 1465, 1546, 1591, 1787
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
BsiHKAI	GWGCWC	2 cut(s)	342, 1108
BsiSI	CCGG	3 cut(s)	84, 114, 1643
BslFI	GGGAC	1 cut(s)	1638
BslI	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
BsmAI	GTCTC	2 cut(s)	777, 1397
BsmFI	GGGAC	1 cut(s)	1638
BsmI	GAATGC	2 cut(s)	1391, 1777
BsnI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
Bsp120I	GGGCCC	1 cut(s)	1808
Bsp1286I	GDGCHC	3 cut(s)	342, 1108, 1812
Bsp143I	GATC	4 cut(s)	105, 145, 206, 1714
BspACI	CCGC	5 cut(s)	18, 21, 1456, 1691, 1766
BspANI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
BspCNI	CTCAG	2 cut(s)	607, 982
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	4 cut(s)	513, 1545, 1666, 1810
BspQI	GCTCTTC	1 cut(s)	1569
BsrDI	GCAATG	2 cut(s)	160, 321
BsrI	ACTGG	4 cut(s)	183, 375, 553, 1165
BssMI	GATC	4 cut(s)	105, 145, 206, 1714
BssNI	GRCGYC	1 cut(s)	802
BssSI	CACGAG	2 cut(s)	1333, 1755
BssT1I	CCWWGG	6 cut(s)	300, 438, 457, 506, 1251, 1828
Bst2BI	CACGAG	2 cut(s)	1333, 1755
Bst2UI	CCWGG	3 cut(s)	532, 1026, 1434
Bst4CI	ACNGT	2 cut(s)	169, 591
Bst6I	CTCTTC	2 cut(s)	864, 1569
BstACI	GRCGYC	1 cut(s)	802
BstAPI	GCANNNNNTGC	1 cut(s)	1559
BstC8I	GCNNGC	2 cut(s)	1086, 1366
BstDEI	CTNAG	3 cut(s)	615, 990, 1820
BstDSI	CCRYGG	1 cut(s)	1459
BstF5I	GGATG	6 cut(s)	75, 187, 358, 397, 1699, 1847
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	108, 148, 209, 1717
BstMAI	GTCTC	2 cut(s)	777, 1397
BstMBI	GATC	4 cut(s)	105, 145, 206, 1714
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 787, 1085, 1475, 1559, 1772
BstNI	CCWGG	3 cut(s)	532, 1026, 1434
BstNSI	RCATGY	5 cut(s)	790, 1050, 1368, 1410, 1442
BstSCI	CCNGG	5 cut(s)	112, 530, 1024, 1432, 1642
BstSLI	GKGCMC	2 cut(s)	342, 1812
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	6 cut(s)	1008, 1348, 1465, 1546, 1591, 1787
BstXI	CCANNNNNNTGG	1 cut(s)	1155
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
BtgI	CCRYGG	1 cut(s)	1459
BtsCI	GGATG	6 cut(s)	75, 187, 358, 397, 1699, 1847
BtsIMutI	CAGTG	3 cut(s)	165, 176, 382
Cac8I	GCNNGC	2 cut(s)	1086, 1366
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	1808, 1809, 1845
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	2 cut(s)	576, 648
CviAII	CATG	9 cut(s)	573, 787, 895, 1047, 1365, 1407, 1439, 1474, 1852
CviQI	GTAC	2 cut(s)	576, 648
DdeI	CTNAG	3 cut(s)	615, 990, 1820
DpnI	GATC	4 cut(s)	107, 147, 208, 1716
DpnII	GATC	4 cut(s)	105, 145, 206, 1714
DraI	TTTAAA	1 cut(s)	1228
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	864, 1569
EarI	CTCTTC	2 cut(s)	864, 1569
Ecl136II	GAGCTC	1 cut(s)	1106
Eco130I	CCWWGG	6 cut(s)	300, 438, 457, 506, 1251, 1828
Eco147I	AGGCCT	2 cut(s)	981, 1084
Eco24I	GRGCYC	2 cut(s)	1108, 1812
Eco47I	GGWCC	1 cut(s)	1845
Eco53kI	GAGCTC	1 cut(s)	1106
Eco57I	CTGAAG	3 cut(s)	120, 504, 1119
Eco81I	CCTNAGG	1 cut(s)	990
EcoICRI	GAGCTC	1 cut(s)	1106
EcoRII	CCWGG	3 cut(s)	530, 1024, 1432
EcoT14I	CCWWGG	6 cut(s)	300, 438, 457, 506, 1251, 1828
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	2 cut(s)	1108, 1812
ErhI	CCWWGG	6 cut(s)	300, 438, 457, 506, 1251, 1828
FaeI	CATG	9 cut(s)	576, 790, 898, 1050, 1368, 1410, 1442, 1477, 1855
FalI	AAGNNNNNCTT	8 cut(s)	499, 531, 744, 776, 905, 937, 1493, 1525
FaqI	GGGAC	1 cut(s)	1638
FatI	CATG	9 cut(s)	572, 786, 894, 1046, 1364, 1406, 1438, 1473, 1851
FauI	CCCGC	1 cut(s)	1759
FbaI	TGATCA	3 cut(s)	105, 145, 1714
FblI	GTMKAC	1 cut(s)	1538
Fnu4HI	GCNGC	8 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580, 1776
FokI	GGATG	6 cut(s)	82, 194, 365, 404, 1706, 1854
FriOI	GRGCYC	2 cut(s)	1108, 1812
Fsp4HI	GCNGC	8 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580, 1776
FspBI	CTAG	2 cut(s)	278, 1080
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	8 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580, 1776
GsuI	CTGGAG	3 cut(s)	993, 1047, 1503
HaeIII	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
HapII	CCGG	3 cut(s)	84, 114, 1643
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	802
Hin1II	CATG	9 cut(s)	576, 790, 898, 1050, 1368, 1410, 1442, 1477, 1855
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	2 cut(s)	940, 1539
HindII	GTYRAC	2 cut(s)	940, 1539
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	8 cut(s)	125, 197, 228, 500, 700, 879, 898, 1824
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	3 cut(s)	84, 114, 1643
HphI	GGTGA	6 cut(s)	134, 155, 317, 359, 563, 848
Hpy166II	GTNNAC	4 cut(s)	340, 766, 940, 1539
Hpy188I	TCNGA	9 cut(s)	110, 139, 211, 616, 807, 1353, 1657, 1704, 1747
Hpy8I	GTNNAC	4 cut(s)	340, 766, 940, 1539
Hpy99I	CGWCG	1 cut(s)	1543
HpyCH4III	ACNGT	2 cut(s)	169, 591
HpyCH4IV	ACGT	1 cut(s)	1290
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 787, 1085, 1475, 1559, 1772
HpyF3I	CTNAG	3 cut(s)	615, 990, 1820
HpySE526I	ACGT	1 cut(s)	1290
Hsp92I	GRCGYC	1 cut(s)	802
Hsp92II	CATG	9 cut(s)	576, 790, 898, 1050, 1368, 1410, 1442, 1477, 1855
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	3 cut(s)	105, 145, 1714
KspAI	GTTAAC	1 cut(s)	940
Kzo9I	GATC	4 cut(s)	105, 145, 206, 1714
LguI	GCTCTTC	1 cut(s)	1569
LmnI	GCTCC	3 cut(s)	376, 757, 1103
Lsp1109I	GCAGC	6 cut(s)	1008, 1348, 1465, 1546, 1591, 1787
LweI	GCATC	2 cut(s)	1008, 1540
MaeI	CTAG	2 cut(s)	278, 1080
MaeII	ACGT	1 cut(s)	1290
MaeIII	GTNAC	5 cut(s)	377, 654, 1042, 1505, 1864
MalI	GATC	4 cut(s)	107, 147, 208, 1716
MboI	GATC	4 cut(s)	105, 145, 206, 1714
MhlI	GDGCHC	3 cut(s)	342, 1108, 1812
MluCI	AATT	9 cut(s)	9, 309, 601, 642, 1238, 1280, 1339, 1616, 1650
MlyI	GAGTC	3 cut(s)	694, 888, 1833
MmeI	TCCRAC	3 cut(s)	250, 314, 1642
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	3 cut(s)	285, 741, 1616
MslI	CAYNNNNRTG	2 cut(s)	345, 1353
MspA1I	CMGCKG	1 cut(s)	1559
MspI	CCGG	3 cut(s)	84, 114, 1643
MspR9I	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
Mva1269I	GAATGC	2 cut(s)	1391, 1777
MvaI	CCWGG	3 cut(s)	532, 1026, 1434
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	31, 787, 1085, 1475, 1559, 1772
NciI	CCSGG	2 cut(s)	114, 1644
NdeII	GATC	4 cut(s)	105, 145, 206, 1714
NlaIII	CATG	9 cut(s)	576, 790, 898, 1050, 1368, 1410, 1442, 1477, 1855
NlaIV	GGNNCC	4 cut(s)	513, 1545, 1666, 1810
NmuCI	GTSAC	5 cut(s)	377, 654, 1042, 1505, 1864
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	5 cut(s)	790, 1050, 1368, 1410, 1442
OliI	CACNNNNGTG	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	1368
PceI	AGGCCT	2 cut(s)	981, 1084
PciI	ACATGT	2 cut(s)	1046, 1438
PciSI	GCTCTTC	1 cut(s)	1569
PctI	GAATGC	2 cut(s)	1391, 1777
PdmI	GAANNNNTTC	3 cut(s)	285, 741, 1616
PfeI	GAWTC	5 cut(s)	125, 197, 228, 500, 898
PkrI	GCNGC	8 cut(s)	19, 22, 1023, 1363, 1480, 1561, 1581, 1777
PleI	GAGTC	3 cut(s)	694, 887, 1832
PpsI	GAGTC	3 cut(s)	694, 887, 1832
PscI	ACATGT	2 cut(s)	1046, 1438
Psp124BI	GAGCTC	1 cut(s)	1108
Psp6I	CCWGG	3 cut(s)	530, 1024, 1432
PspGI	CCWGG	3 cut(s)	530, 1024, 1432
PspN4I	GGNNCC	4 cut(s)	513, 1545, 1666, 1810
PspOMI	GGGCCC	1 cut(s)	1808
PspPI	GGNCC	3 cut(s)	1808, 1809, 1845
PvuII	CAGCTG	1 cut(s)	1559
RsaI	GTAC	2 cut(s)	577, 649
RsaNI	GTAC	2 cut(s)	576, 648
RseI	CAYNNNNRTG	2 cut(s)	345, 1353
SacI	GAGCTC	1 cut(s)	1108
SalI	GTCGAC	1 cut(s)	1537
SapI	GCTCTTC	1 cut(s)	1569
SatI	GCNGC	8 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580, 1776
Sau3AI	GATC	4 cut(s)	105, 145, 206, 1714
Sau96I	GGNCC	3 cut(s)	1808, 1809, 1845
SchI	GAGTC	3 cut(s)	694, 888, 1833
ScrFI	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
SduI	GDGCHC	3 cut(s)	342, 1108, 1812
SfaNI	GCATC	2 cut(s)	1008, 1540
SinI	GGWCC	1 cut(s)	1845
SmiMI	CAYNNNNRTG	2 cut(s)	345, 1353
SmlI	CTYRAG	3 cut(s)	333, 579, 632
SmoI	CTYRAG	3 cut(s)	333, 579, 632
SphI	GCATGC	1 cut(s)	1368
Sse9I	AATT	9 cut(s)	9, 309, 601, 642, 1238, 1280, 1339, 1616, 1650
SseBI	AGGCCT	2 cut(s)	981, 1084
SsiI	CCGC	5 cut(s)	18, 21, 1456, 1691, 1766
SspMI	CTAG	2 cut(s)	278, 1080
SstI	GAGCTC	1 cut(s)	1108
StuI	AGGCCT	2 cut(s)	981, 1084
StyD4I	CCNGG	5 cut(s)	112, 530, 1024, 1432, 1642
StyI	CCWWGG	6 cut(s)	300, 438, 457, 506, 1251, 1828
TaaI	ACNGT	2 cut(s)	169, 591
TaiI	ACGT	1 cut(s)	1293
TaqI	TCGA	2 cut(s)	1125, 1538
TasI	AATT	9 cut(s)	9, 309, 601, 642, 1238, 1280, 1339, 1616, 1650
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	2 cut(s)	20, 23
TfiI	GAWTC	5 cut(s)	125, 197, 228, 500, 898
TscAI	CASTG	3 cut(s)	172, 183, 382
TseFI	GTSAC	5 cut(s)	377, 654, 1042, 1505, 1864
TseI	GCWGC	6 cut(s)	1021, 1361, 1478, 1559, 1579, 1775
Tsp45I	GTSAC	5 cut(s)	377, 654, 1042, 1505, 1864
TspGWI	ACGGA	2 cut(s)	1556, 1624
TspRI	CASTG	3 cut(s)	172, 183, 382
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	1845
XapI	RAATTY	4 cut(s)	1238, 1280, 1339, 1650
XceI	RCATGY	5 cut(s)	790, 1050, 1368, 1410, 1442
XmiI	GTMKAC	1 cut(s)	1538
XmnI	GAANNNNTTC	3 cut(s)	285, 741, 1616
XspI	CTAG	2 cut(s)	278, 1080
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.