Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

10402062 .. 10402698

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATATGATGAACATGACGATGAACAGTACGACTATGACTATGCAGATGAGTTTCTACTGGGGCAGAAACGTCACTATCCTCTTCTCTAAGTGGCCTGGAAACGACCAACATAACCCAGGCATGTACATATTGGCTCTCTTCTTTGTGTTTGCTATAGCCTTTGCCATGGAAGCTTTGTCCGTCTGGCCGACTATCAAGCCCAGCAGGAGTTCGGTAGTCGCAGGCCTGGCTCAGGCTTTTCTTTACGTCATTCGCATCAGCTTGGGTTACTTTGTGATGCTTGCCGTTATGTCCTACAACATTGGAGTCTTCATAGCAGCCGTGGCTGGCCACACGGTTGGGTTCTTTGTTGTCAAGGCTAGTGCTCTTTCCATTACCAAGCCTCCGGGGCCCGAACCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

136

Amino Acids

15.01

Weight (kDa)

9.45

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	66 - 118	5.3e-12	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	188, 331
AfaI	GTAC	2 cut(s)	31, 128
AfiI	CCNNNNNNNGG	1 cut(s)	235
AjnI	CCWGG	3 cut(s)	97, 118, 228
AluBI	AGCT	2 cut(s)	176, 264
AluI	AGCT	2 cut(s)	176, 264
Alw21I	GWGCWC	1 cut(s)	370
AoxI	GGCC	5 cut(s)	95, 188, 226, 331, 392
ApaI	GGGCCC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	392, 393
AsuC2I	CCSGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	332
BceAI	ACGGC	2 cut(s)	272, 308
BciT130I	CCWGG	3 cut(s)	99, 120, 230
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	4 cut(s)	99, 120, 230, 390
BmgT120I	GGNCC	2 cut(s)	392, 393
BmiI	GGNNCC	2 cut(s)	393, 394
BmrFI	CCNGG	4 cut(s)	99, 120, 230, 390
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	267, 270
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	118, 168, 324, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	99, 120, 230
BseDI	CCNNGG	4 cut(s)	118, 168, 324, 389
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	5 cut(s)	97, 190, 228, 333, 394
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	235
BsnI	GGCC	5 cut(s)	97, 190, 228, 333, 394
Bsp120I	GGGCCC	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	370, 396
Bsp1407I	TGTACA	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	168
BspANI	GGCC	5 cut(s)	97, 190, 228, 333, 394
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	393, 394
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	4 cut(s)	118, 168, 324, 389
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	99, 120, 230
Bst4CI	ACNGT	2 cut(s)	29, 340
Bst6I	CTCTTC	2 cut(s)	89, 146
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	226, 285, 331
BstDEI	CTNAG	2 cut(s)	90, 234
BstDSI	CCRYGG	2 cut(s)	168, 324
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 230, 326, 391
BstNI	CCWGG	3 cut(s)	99, 120, 230
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	4 cut(s)	97, 118, 228, 388
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuRI	GGCC	5 cut(s)	97, 190, 228, 333, 394
BtgI	CCRYGG	2 cut(s)	168, 324
Cac8I	GCNNGC	3 cut(s)	226, 285, 331
Cfr13I	GGNCC	2 cut(s)	392, 393
Csp6I	GTAC	2 cut(s)	30, 127
CviAII	CATG	3 cut(s)	16, 124, 169
CviQI	GTAC	2 cut(s)	30, 127
DdeI	CTNAG	2 cut(s)	90, 234
EaeI	YGGCCR	2 cut(s)	188, 331
Eam1104I	CTCTTC	2 cut(s)	89, 146
EarI	CTCTTC	2 cut(s)	89, 146
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	97, 118, 228
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	19, 127, 172
FatI	CATG	3 cut(s)	15, 123, 168
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	5 cut(s)	97, 190, 228, 333, 394
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	3 cut(s)	19, 127, 172
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	29, 340
HpyCH4IV	ACGT	2 cut(s)	72, 249
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 230, 326, 391
HpyF3I	CTNAG	2 cut(s)	90, 234
HpySE526I	ACGT	2 cut(s)	72, 249
Hsp92II	CATG	3 cut(s)	19, 127, 172
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	267, 270
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	72, 249
MaeIII	GTNAC	2 cut(s)	73, 269
MboII	GAAGA	3 cut(s)	76, 133, 304
MhlI	GDGCHC	2 cut(s)	370, 396
MlsI	TGGCCA	1 cut(s)	333
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	2 cut(s)	92, 396
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	4 cut(s)	99, 120, 230, 390
MvaI	CCWGG	3 cut(s)	99, 120, 230
MwoI	GCNNNNNNNGC	4 cut(s)	173, 230, 326, 391
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	168
NlaIII	CATG	3 cut(s)	19, 127, 172
NlaIV	GGNNCC	2 cut(s)	393, 394
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	97, 118, 228
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	3 cut(s)	97, 118, 228
PspN4I	GGNNCC	2 cut(s)	393, 394
PspOMI	GGGCCC	1 cut(s)	392
PspPI	GGNCC	2 cut(s)	392, 393
RsaI	GTAC	2 cut(s)	31, 128
RsaNI	GTAC	2 cut(s)	30, 127
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	392, 393
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	4 cut(s)	99, 120, 230, 390
SduI	GDGCHC	2 cut(s)	370, 396
SetI	ASST	5 cut(s)	75, 178, 252, 266, 403
SfaNI	GCATC	2 cut(s)	267, 270
SfcI	CTRYAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	228
SspMI	CTAG	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	97, 118, 228, 388
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	29, 340
TaiI	ACGT	2 cut(s)	75, 252
TatI	WGTACW	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	26, 38, 304, 393
TspGWI	ACGGA	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	233
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.