Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Reverse (-)

10452920 .. 10454274

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTGAGGAAGTGAAGCTTTTTGGTGTTTGGGGAAGCCCTTTCAGTCGGAGAGTGGAAATGGCTCTGAAGCTGAAAGGTGTCGAATACGAATACTTTGAAGAGGACCTGCAAAACAAGAGCGATCTGCTTCTCAAATACAACCCAGTTCACAAGAAGATCCCTGTGCTCCTACACAAAGGAAAACCAATAGCAGAGTCTGCTGTTATTCTTGAATACATCGATGAGACATGGAAGGGCTTTCCCCTATTGCCTAAAGACCCTTATCAAAGAGCCACAGCTCGGTTTTGGGCTAGGTTCGTTGAGGAAAAGTGCATGCCTGCGCTATTCAACTGCACTGTCGCGGAGGATCGTAAAAAGGCTGTGGAGGAAGCTCATGAGACTCTGAAACTACTTGAAAATGAGCTCAAGGATAAGAAGTTCTTTGGGGGAGAGGACATTGGATTTGTGGACATTGTTGCTGACTTCATAGGAGGCTACTGGCTTAGAGATATTCAAGAGATTGTCGGATTGGAGCTCTTAACAAAAGAGAAATTTCCCAAGCTATGTGAATGGAGCGATGAGTTTGTCAACCACGCTGTTATTAAGGAATGTCTGCCTCCTAGAGATAAGCTATTTGCTTTCTTCCGCACCCGCTTTGGTTCAAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

217

Amino Acids

25.27

Weight (kDa)

5.93

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	2.1e-20	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 77	4.2e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 77	2.7e-16	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	115 - 192	6.8e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccII	CGCG	1 cut(s)	344
AciI	CCGC	3 cut(s)	344, 628, 634
AclWI	GGATC	2 cut(s)	154, 357
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	101, 215, 331, 398, 497, 645
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	19, 73, 281, 374, 406, 517, 544, 613
AluI	AGCT	8 cut(s)	19, 73, 281, 374, 406, 517, 544, 613
Alw21I	GWGCWC	3 cut(s)	171, 408, 519
Alw26I	GTCTC	2 cut(s)	221, 374
AlwI	GGATC	2 cut(s)	154, 357
AlwNI	CAGNNNCTG	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	408, 519
Bbv12I	GWGCWC	3 cut(s)	171, 408, 519
BcoDI	GTCTC	2 cut(s)	221, 374
BfaI	CTAG	2 cut(s)	294, 603
BfuAI	ACCTGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	146, 485
BseCI	ATCGAT	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	146, 485
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	3 cut(s)	171, 408, 519
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	221, 374
Bsp1286I	GDGCHC	3 cut(s)	171, 408, 519
Bsp143I	GATC	3 cut(s)	124, 159, 349
BspACI	CCGC	3 cut(s)	344, 628, 634
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	154, 357
BsrI	ACTGG	2 cut(s)	146, 485
BssMI	GATC	3 cut(s)	124, 159, 349
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	317, 321
BstDEI	CTNAG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	127, 162, 352
BstMAI	GTCTC	2 cut(s)	221, 374
BstMBI	GATC	3 cut(s)	124, 159, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	319
BstUI	CGCG	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	317, 321
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	222
CviAII	CATG	3 cut(s)	231, 316, 377
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	3 cut(s)	126, 161, 351
DpnII	GATC	3 cut(s)	124, 159, 349
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	406, 517
Eco24I	GRGCYC	2 cut(s)	408, 519
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	406, 517
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	2 cut(s)	406, 517
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	2 cut(s)	408, 519
FaeI	CATG	3 cut(s)	234, 319, 380
FaiI	YATR	6 cut(s)	232, 317, 378, 470, 547, 652
FalI	AAGNNNNNCTT	3 cut(s)	35, 407, 439
FatI	CATG	3 cut(s)	230, 315, 376
FauI	CCCGC	1 cut(s)	641
FriOI	GRGCYC	2 cut(s)	408, 519
FspBI	CTAG	2 cut(s)	294, 603
GlaI	GCGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	234, 319, 380
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	197, 382
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	151, 451, 571
Hpy188I	TCNGA	4 cut(s)	51, 69, 387, 509
Hpy188III	TCNNGA	3 cut(s)	212, 377, 497
Hpy8I	GTNNAC	3 cut(s)	151, 451, 571
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	112, 315, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	485
Hsp92II	CATG	3 cut(s)	234, 319, 380
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	124, 159, 349
LmnI	GCTCC	3 cut(s)	174, 514, 555
LpnPI	CCDG	5 cut(s)	122, 159, 177, 333, 466
MaeI	CTAG	2 cut(s)	294, 603
MalI	GATC	3 cut(s)	126, 161, 351
MboI	GATC	3 cut(s)	124, 159, 349
MboII	GAAGA	3 cut(s)	113, 169, 616
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	171, 408, 519
MluCI	AATT	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	206, 376
MmeI	TCCRAC	2 cut(s)	29, 487
MnlI	CCTC	7 cut(s)	97, 298, 340, 361, 427, 467, 609
MseI	TTAA	2 cut(s)	521, 585
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	3 cut(s)	124, 159, 349
NlaIII	CATG	3 cut(s)	234, 319, 380
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	376
PleI	GAGTC	2 cut(s)	205, 376
PpsI	GAGTC	2 cut(s)	205, 376
PpuMI	RGGWCCY	1 cut(s)	106
Psp124BI	GAGCTC	2 cut(s)	408, 519
Psp5II	RGGWCCY	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	159
SacI	GAGCTC	2 cut(s)	408, 519
SaqAI	TTAA	2 cut(s)	521, 585
Sau3AI	GATC	3 cut(s)	124, 159, 349
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	206, 376
SduI	GDGCHC	3 cut(s)	171, 408, 519
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	1 cut(s)	533
SsiI	CCGC	3 cut(s)	344, 628, 634
SspMI	CTAG	2 cut(s)	294, 603
SstI	GAGCTC	2 cut(s)	408, 519
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	84, 222
TasI	AATT	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	521, 585
Tru9I	TTAA	2 cut(s)	521, 585
TscAI	CASTG	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	2 cut(s)	294, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.