Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

31239464 .. 31244929

Gene Structure 5466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGACCCACAGAACTCCACCACGACAACCACCGCCACCGCCACTCCTCCAATCCCCTCCTCCTCTGAAACACCACAACTCCCACCCCCCCAGCCCCAATCGCAACCTCAGCCGCCGTCCTCCTCCGCCTCAGCCCCTTCAACCTCCGCCCCAATCCCTCCGTCTCCGTCTCCAAACCCTAACCCTAAACCCTCAACCACATCATTACCACCGCAGTCCCTCCCAGCCCCTGCTCATACTCGGCCTCCCCCCACATTGAATCGCCCATGGCCGCAGCCGCCTCACTACTCCCACCACTACCCCTCCCCTTCTTCTTCCGCTTCCTCTGTGCCTCCGGCGCCGTCGGTCTCCGGGCCTCCTCCGAGGGGCGGCATTGCCATTGGTGTCCCGGCGCACCACCCTGGCCCCCCTCCCCCTCAGCCCACTCCGTATACCTCATCTTACGGCCATTTCGGCGGCATCGGCCGCGGCGGCGGTGTTGGTGTGCCTGAGCCCTCATCCAATTCCAATGCTTCTCAGGTGAGACCGCCGATGCCAGGAATGCAGGGAATGGGGATGATGGGCTCACTTGGTTCGACTTCTCAAATGCGCCCAGCTGGGATTTCTCCACACCATCCACAGAGACCTGTTCAATCCCCTCTTAGGCCACCATCTACTGCAAGTAATCAGTCCCCTACTTCCCAAAATTTCCAAGGGCATAACCTTTCAAGAGCCTCATCATTGGGATCTCCTAGTTCATCAAATACATCTCAAGTTTTACCGCTTCATAATCAGCCATGGTTATCTGGATCACAAGGGAAGCCTCCTATACCCTCCTCTCCGTATAGGCAGCAGATGACCTCGACATCGATGATGCAAAGATCACATCTTCCGCAGCCGCAGCAGCAACAACAACAACAACACCATCCCCTTCCTACGGCTACACAACAACAGCAGCAAGGACCCATGCCTACAGCTTCACCACAACAGCATATGCCATCTGTGCAGCATCAACAACCTTCCTCCTCACATCAAGGACATGATCATTTTGGGCAACAAACTCAACCGTCAAGGATCCCGCAAGCTTCACCGCGTCAGCAACAAAATTCAAGGGTCCAGGTCCCAGTAAACCAGAAGTCTTCCCCGCTTGCAGCAGCACAGCCTAACACAGTCCAATCAGCACCGCAAAATAGAATCACTAGTGCAGAAACTGAGGAACCTTGTAACAGAATTCTTAGCAAAAGAACCATTCATGATCTAGTCAACCAGATTGATCCATCTGAGAGATTGGATCCAGATGTTGAAGACATTCTCATGGACATTGCAGATGAATTTGTAGAATCTATTACAACATTTAGTTGCTCACTAGCCAAGCATCGGAAATCAACTACATTGGAAGCAAAAGACATACTCCTACATCTTGAAAAAAATTGGAATATAACTCTTCCTGGTTTTGTTGGTGATGAAATTAAGGGCTACAGAAAACCGATTACAAATGATATTCACAAGGGGCGTCTTGCTGCTATAAAGAAGTCCATGTTACTTGATAATGTTTCGAGCATATCTGATAATGAAAATAGGCGGCAAGTTTTGATGCAGACTGTGGGCCAAAATCTGCCCTTGAGTGTAGATATGAAGTTGCCAACTAATCATGTTGCTCGGGGACAAAGTGGCTTTGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

555

Amino Acids

59.32

Weight (kDa)

9.75

Isoelectric Point (pI)

76.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_20kDa	PF03847	406 - 473	4.9e-32	Transcription initiation factor TFIID subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	2 cut(s)	468, 1072
AclWI	GGATC	7 cut(s)	733, 796, 1048, 1061, 1247, 1265, 1278
AcoI	YGGCCR	3 cut(s)	269, 445, 463
AcsI	RAATTY	4 cut(s)	685, 1084, 1209, 1310
AcyI	GRCGYC	2 cut(s)	338, 1492
AfiI	CCNNNNNNNGG	6 cut(s)	365, 368, 536, 642, 916, 1356
AgsI	TTSAA	7 cut(s)	141, 259, 632, 708, 1089, 1283, 1403
AhlI	ACTAGT	1 cut(s)	1178
AjnI	CCWGG	4 cut(s)	400, 535, 1095, 1426
AluBI	AGCT	3 cut(s)	596, 956, 1064
AluI	AGCT	3 cut(s)	596, 956, 1064
Alw26I	GTCTC	5 cut(s)	168, 174, 352, 517, 616
AlwI	GGATC	7 cut(s)	733, 796, 1048, 1061, 1247, 1265, 1278
AlwNI	CAGNNNCTG	2 cut(s)	230, 1190
Ama87I	CYCGRG	1 cut(s)	1638
AoxI	GGCC	8 cut(s)	242, 269, 353, 403, 445, 463, 644, 1585
ApoI	RAATTY	4 cut(s)	685, 1084, 1209, 1310
Asp700I	GAANNNNTTC	1 cut(s)	1287
AspLEI	GCGC	3 cut(s)	340, 394, 591
AspS9I	GGNCC	7 cut(s)	4, 353, 404, 941, 1093, 1099, 1585
AsuC2I	CCSGG	2 cut(s)	352, 389
AsuHPI	GGTGA	4 cut(s)	532, 951, 1059, 1451
AvaI	CYCGRG	1 cut(s)	1638
AvaII	GGWCC	4 cut(s)	4, 941, 1093, 1099
BamHI	GGATCC	2 cut(s)	1053, 1270
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	495, 566
BbsI	GAAGAC	2 cut(s)	1110, 1290
BbvCI	CCTCAGC	3 cut(s)	108, 130, 417
BccI	CCATC	6 cut(s)	553, 621, 658, 912, 985, 1264
BceAI	ACGGC	4 cut(s)	100, 325, 460, 933
BciT130I	CCWGG	4 cut(s)	402, 537, 1097, 1428
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	2 cut(s)	352, 389
BcoDI	GTCTC	5 cut(s)	168, 174, 352, 517, 616
BcuI	ACTAGT	1 cut(s)	1178
BfaI	CTAG	4 cut(s)	732, 1179, 1238, 1346
BfmI	CTRYAG	2 cut(s)	951, 1456
BfoI	RGCGCY	1 cut(s)	341
BglI	GCCNNNNNGGC	2 cut(s)	453, 471
Bme1390I	CCNGG	6 cut(s)	352, 389, 402, 537, 1097, 1428
Bme18I	GGWCC	4 cut(s)	4, 941, 1093, 1099
BmeT110I	CYCGRG	1 cut(s)	1638
BmgT120I	GGNCC	7 cut(s)	4, 353, 404, 941, 1093, 1099, 1585
BmiI	GGNNCC	9 cut(s)	6, 339, 406, 943, 1055, 1094, 1101, 1197, 1272
BmrFI	CCNGG	6 cut(s)	352, 389, 402, 537, 1097, 1428
BmrI	ACTGGG	1 cut(s)	1097
BmsI	GCATC	6 cut(s)	468, 522, 843, 997, 1363, 1563
BmuI	ACTGGG	1 cut(s)	1097
BpiI	GAAGAC	2 cut(s)	1110, 1290
Bpu10I	CCTNAGC	4 cut(s)	108, 130, 417, 489
BpuEI	CTTGAG	2 cut(s)	735, 1621
BpuMI	CCSGG	2 cut(s)	352, 389
Bsa29I	ATCGAT	1 cut(s)	848
BsaHI	GRCGYC	2 cut(s)	338, 1492
BsaI	GGTCTC	3 cut(s)	352, 517, 616
BsaJI	CCNNGG	6 cut(s)	266, 362, 400, 466, 691, 776
BsaXI	ACNNNNNCTCC	8 cut(s)	28, 58, 63, 93, 229, 259, 287, 317
Bsc4I	CCNNNNNNNGG	6 cut(s)	365, 368, 536, 642, 916, 1356
Bse1I	ACTGG	1 cut(s)	1103
Bse3DI	GCAATG	2 cut(s)	372, 1299
BseBI	CCWGG	4 cut(s)	402, 537, 1097, 1428
BseCI	ATCGAT	1 cut(s)	848
BseDI	CCNNGG	6 cut(s)	266, 362, 400, 466, 691, 776
BseGI	GGATG	4 cut(s)	497, 561, 613, 904
BseLI	CCNNNNNNNGG	6 cut(s)	365, 368, 536, 642, 916, 1356
BseMI	GCAATG	2 cut(s)	372, 1299
BseMII	CTCAG	7 cut(s)	122, 144, 431, 480, 530, 1182, 1251
BseNI	ACTGG	1 cut(s)	1103
BseRI	GAGGAG	7 cut(s)	36, 49, 52, 112, 348, 805, 994
BseX3I	CGGCCG	1 cut(s)	463
BseYI	CCCAGC	4 cut(s)	90, 223, 592, 596
BsgI	GTGCAG	2 cut(s)	1004, 1203
Bsh1236I	CGCG	2 cut(s)	468, 1072
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	8 cut(s)	244, 271, 355, 405, 447, 465, 646, 1587
BshNI	GGYRCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	848
BsiEI	CGRYCG	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	1638
BsiSI	CCGG	3 cut(s)	335, 351, 389
BslFI	GGGAC	5 cut(s)	202, 371, 655, 1085, 1656
BslI	CCNNNNNNNGG	6 cut(s)	365, 368, 536, 642, 916, 1356
BsmAI	GTCTC	5 cut(s)	168, 174, 352, 517, 616
BsmBI	CGTCTC	2 cut(s)	168, 174
BsmFI	GGGAC	5 cut(s)	202, 371, 655, 1085, 1656
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	8 cut(s)	244, 271, 355, 405, 447, 465, 646, 1587
Bso31I	GGTCTC	3 cut(s)	352, 517, 616
BsoBI	CYCGRG	1 cut(s)	1638
Bsp1286I	GDGCHC	2 cut(s)	495, 566
Bsp143I	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
Bsp19I	CCATGG	2 cut(s)	266, 776
BspANI	GGCC	8 cut(s)	244, 271, 355, 405, 447, 465, 646, 1587
BspCNI	CTCAG	7 cut(s)	121, 143, 430, 481, 529, 1183, 1252
BspDI	ATCGAT	1 cut(s)	848
BspFNI	CGCG	2 cut(s)	468, 1072
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	9 cut(s)	6, 339, 406, 943, 1055, 1094, 1101, 1197, 1272
BspPI	GGATC	7 cut(s)	733, 796, 1048, 1061, 1247, 1265, 1278
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	3 cut(s)	352, 517, 616
BsrDI	GCAATG	2 cut(s)	372, 1299
BsrI	ACTGG	1 cut(s)	1103
BssECI	CCNNGG	6 cut(s)	266, 362, 400, 466, 691, 776
BssMI	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
BssNAI	GTATAC	1 cut(s)	432
BssNI	GRCGYC	2 cut(s)	338, 1492
BssT1I	CCWWGG	3 cut(s)	266, 691, 776
Bst1107I	GTATAC	1 cut(s)	432
Bst2UI	CCWGG	4 cut(s)	402, 537, 1097, 1428
Bst4CI	ACNGT	3 cut(s)	1047, 1150, 1582
Bst6I	CTCTTC	1 cut(s)	1428
BstACI	GRCGYC	2 cut(s)	338, 1492
BstC8I	GCNNGC	2 cut(s)	1062, 1128
BstDEI	CTNAG	9 cut(s)	108, 130, 417, 489, 516, 641, 1191, 1214, 1260
BstDSI	CCRYGG	3 cut(s)	266, 466, 776
BstF5I	GGATG	4 cut(s)	497, 561, 613, 904
BstFNI	CGCG	2 cut(s)	468, 1072
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	3 cut(s)	340, 394, 591
BstKTI	GATC	8 cut(s)	728, 791, 863, 1024, 1056, 1237, 1255, 1273
BstMAI	GTCTC	5 cut(s)	168, 174, 352, 517, 616
BstMBI	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
BstMCI	CGRYCG	1 cut(s)	466
BstNI	CCWGG	4 cut(s)	402, 537, 1097, 1428
BstSCI	CCNGG	6 cut(s)	350, 387, 400, 535, 1095, 1426
BstSFI	CTRYAG	2 cut(s)	951, 1456
BstUI	CGCG	2 cut(s)	468, 1072
BstV2I	GAAGAC	2 cut(s)	1110, 1290
BstX2I	RGATCY	3 cut(s)	725, 1053, 1270
BstYI	RGATCY	3 cut(s)	725, 1053, 1270
BstZ17I	GTATAC	1 cut(s)	432
BstZI	CGGCCG	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	848
BsuRI	GGCC	8 cut(s)	244, 271, 355, 405, 447, 465, 646, 1587
BsuTUI	ATCGAT	1 cut(s)	848
BtgI	CCRYGG	3 cut(s)	266, 466, 776
BtsCI	GGATG	4 cut(s)	497, 561, 613, 904
Cac8I	GCNNGC	2 cut(s)	1062, 1128
CaiI	CAGNNNCTG	2 cut(s)	230, 1190
CciI	TCATGA	1 cut(s)	1231
CfoI	GCGC	3 cut(s)	340, 394, 591
Cfr13I	GGNCC	7 cut(s)	4, 353, 404, 941, 1093, 1099, 1585
Cfr42I	CCGCGG	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	848
CseI	GACGC	2 cut(s)	1061, 1481
CviAII	CATG	9 cut(s)	267, 777, 946, 1019, 1232, 1294, 1516, 1631, 1660
DdeI	CTNAG	9 cut(s)	108, 130, 417, 489, 516, 641, 1191, 1214, 1260
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	8 cut(s)	727, 790, 862, 1023, 1055, 1236, 1254, 1272
DpnII	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
EaeI	YGGCCR	3 cut(s)	269, 445, 463
EagI	CGGCCG	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	1428
EarI	CTCTTC	1 cut(s)	1428
EciI	GGCGGA	2 cut(s)	115, 136
EclXI	CGGCCG	1 cut(s)	463
Eco130I	CCWWGG	3 cut(s)	266, 691, 776
Eco24I	GRGCYC	2 cut(s)	495, 566
Eco31I	GGTCTC	3 cut(s)	352, 517, 616
Eco47I	GGWCC	4 cut(s)	4, 941, 1093, 1099
Eco52I	CGGCCG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	1638
EcoO109I	RGGNCCY	2 cut(s)	941, 1099
EcoRI	GAATTC	1 cut(s)	1209
EcoRII	CCWGG	4 cut(s)	400, 535, 1095, 1426
EcoT14I	CCWWGG	3 cut(s)	266, 691, 776
EcoT38I	GRGCYC	2 cut(s)	495, 566
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
ErhI	CCWWGG	3 cut(s)	266, 691, 776
Esp3I	CGTCTC	2 cut(s)	168, 174
FaeI	CATG	9 cut(s)	270, 780, 949, 1022, 1235, 1297, 1519, 1634, 1663
FaqI	GGGAC	5 cut(s)	202, 371, 655, 1085, 1656
FatI	CATG	9 cut(s)	266, 776, 945, 1018, 1231, 1293, 1515, 1630, 1659
FauI	CCCGC	2 cut(s)	1065, 1131
FauNDI	CATATG	1 cut(s)	972
FbaI	TGATCA	1 cut(s)	1021
FblI	GTMKAC	1 cut(s)	431
FokI	GGATG	4 cut(s)	484, 568, 600, 891
FriOI	GRGCYC	2 cut(s)	495, 566
FspBI	CTAG	4 cut(s)	732, 1179, 1238, 1346
GlaI	GCGC	3 cut(s)	339, 393, 590
GsaI	CCCAGC	4 cut(s)	94, 227, 596, 600
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	8 cut(s)	244, 271, 355, 405, 447, 465, 646, 1587
HapII	CCGG	3 cut(s)	335, 351, 389
HgaI	GACGC	2 cut(s)	1061, 1481
HhaI	GCGC	3 cut(s)	340, 394, 591
Hin1I	GRCGYC	2 cut(s)	338, 1492
Hin1II	CATG	9 cut(s)	270, 780, 949, 1022, 1235, 1297, 1519, 1634, 1663
Hin6I	GCGC	3 cut(s)	338, 392, 589
HinP1I	GCGC	3 cut(s)	338, 392, 589
HincII	GTYRAC	1 cut(s)	1243
HindII	GTYRAC	1 cut(s)	1243
HindIII	AAGCTT	1 cut(s)	1062
HinfI	GANTC	3 cut(s)	259, 1173, 1319
HpaII	CCGG	3 cut(s)	335, 351, 389
HphI	GGTGA	4 cut(s)	532, 951, 1059, 1451
Hpy166II	GTNNAC	3 cut(s)	432, 1108, 1243
Hpy188I	TCNGA	5 cut(s)	67, 363, 1261, 1359, 1546
Hpy188III	TCNNGA	5 cut(s)	708, 786, 1232, 1274, 1400
Hpy8I	GTNNAC	3 cut(s)	432, 1108, 1243
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	4 cut(s)	147, 318, 920, 1008
HpyCH4III	ACNGT	3 cut(s)	1047, 1150, 1582
HpyCH4V	TGCA	8 cut(s)	544, 659, 856, 985, 1130, 1184, 1304, 1576
HpyF3I	CTNAG	9 cut(s)	108, 130, 417, 489, 516, 641, 1191, 1214, 1260
Hsp92I	GRCGYC	2 cut(s)	338, 1492
Hsp92II	CATG	9 cut(s)	270, 780, 949, 1022, 1235, 1297, 1519, 1634, 1663
HspAI	GCGC	3 cut(s)	338, 392, 589
KasI	GGCGCC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	1021
KspI	CCGCGG	1 cut(s)	469
Kzo9I	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
LweI	GCATC	6 cut(s)	468, 522, 843, 997, 1363, 1563
MaeI	CTAG	4 cut(s)	732, 1179, 1238, 1346
MaeIII	GTNAC	2 cut(s)	1202, 1518
MalI	GATC	8 cut(s)	727, 790, 862, 1023, 1055, 1236, 1254, 1272
MboI	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
MboII	GAAGA	6 cut(s)	303, 306, 860, 1110, 1295, 1415
MflI	RGATCY	3 cut(s)	725, 1053, 1270
MhlI	GDGCHC	2 cut(s)	495, 566
MluCI	AATT	7 cut(s)	502, 685, 1084, 1209, 1310, 1408, 1446
Mly113I	GGCGCC	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	1287
MseI	TTAA	1 cut(s)	1449
MslI	CAYNNNNRTG	1 cut(s)	1292
MspA1I	CMGCKG	2 cut(s)	468, 596
MspI	CCGG	3 cut(s)	335, 351, 389
MspR9I	CCNGG	6 cut(s)	352, 389, 402, 537, 1097, 1428
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	4 cut(s)	402, 537, 1097, 1428
MvnI	CGCG	2 cut(s)	468, 1072
NarI	GGCGCC	1 cut(s)	338
NciI	CCSGG	2 cut(s)	352, 389
NcoI	CCATGG	2 cut(s)	266, 776
NdeI	CATATG	1 cut(s)	972
NdeII	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
NlaIII	CATG	9 cut(s)	270, 780, 949, 1022, 1235, 1297, 1519, 1634, 1663
NlaIV	GGNNCC	9 cut(s)	6, 339, 406, 943, 1055, 1094, 1101, 1197, 1272
NmeAIII	GCCGAG	1 cut(s)	220
PagI	TCATGA	1 cut(s)	1231
PctI	GAATGC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	1287
PfeI	GAWTC	3 cut(s)	259, 1173, 1319
PluTI	GGCGCC	1 cut(s)	341
PpuMI	RGGWCCY	2 cut(s)	941, 1099
Psp5II	RGGWCCY	2 cut(s)	941, 1099
Psp6I	CCWGG	4 cut(s)	400, 535, 1095, 1426
PspFI	CCCAGC	4 cut(s)	90, 223, 592, 596
PspGI	CCWGG	4 cut(s)	400, 535, 1095, 1426
PspN4I	GGNNCC	9 cut(s)	6, 339, 406, 943, 1055, 1094, 1101, 1197, 1272
PspPI	GGNCC	7 cut(s)	4, 353, 404, 941, 1093, 1099, 1585
PspPPI	RGGWCCY	2 cut(s)	941, 1099
PstNI	CAGNNNCTG	2 cut(s)	230, 1190
PsuI	RGATCY	3 cut(s)	725, 1053, 1270
PvuII	CAGCTG	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	1292
SacII	CCGCGG	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	1449
Sau3AI	GATC	8 cut(s)	725, 788, 860, 1021, 1053, 1234, 1252, 1270
Sau96I	GGNCC	7 cut(s)	4, 353, 404, 941, 1093, 1099, 1585
ScrFI	CCNGG	6 cut(s)	352, 389, 402, 537, 1097, 1428
SduI	GDGCHC	2 cut(s)	495, 566
SfaNI	GCATC	6 cut(s)	468, 522, 843, 997, 1363, 1563
SfcI	CTRYAG	2 cut(s)	951, 1456
SfoI	GGCGCC	1 cut(s)	339
Sfr303I	CCGCGG	1 cut(s)	469
SgrBI	CCGCGG	1 cut(s)	469
SinI	GGWCC	4 cut(s)	4, 941, 1093, 1099
SmiMI	CAYNNNNRTG	1 cut(s)	1292
SmlI	CTYRAG	2 cut(s)	750, 1600
SmoI	CTYRAG	2 cut(s)	750, 1600
SpeI	ACTAGT	1 cut(s)	1178
Sse9I	AATT	7 cut(s)	502, 685, 1084, 1209, 1310, 1408, 1446
SspDI	GGCGCC	1 cut(s)	337
SspMI	CTAG	4 cut(s)	732, 1179, 1238, 1346
StyD4I	CCNGG	6 cut(s)	350, 387, 400, 535, 1095, 1426
StyI	CCWWGG	3 cut(s)	266, 691, 776
TaaI	ACNGT	3 cut(s)	1047, 1150, 1582
TaqI	TCGA	4 cut(s)	575, 842, 848, 1535
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	7 cut(s)	502, 685, 1084, 1209, 1310, 1408, 1446
TfiI	GAWTC	3 cut(s)	259, 1173, 1319
Tru1I	TTAA	1 cut(s)	1449
Tru9I	TTAA	1 cut(s)	1449
TspDTI	ATGAA	7 cut(s)	726, 755, 1220, 1323, 1458, 1566, 1628
TspGWI	ACGGA	4 cut(s)	150, 156, 417, 810
VpaK11BI	GGWCC	4 cut(s)	4, 941, 1093, 1099
XapI	RAATTY	4 cut(s)	685, 1084, 1209, 1310
XmiI	GTMKAC	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	1287
XspI	CTAG	4 cut(s)	732, 1179, 1238, 1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.