Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

10400625 .. 10400954

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTGCTTCGCATGACAGCATGCATGCTCCGCCAACGCTGCCGTTTAACAGCACTAGTCACCGTAGGATGATGATGCCCATAACCTTCTTCTGGGGCGACAACACCGAGGTTCTCTTCTCGGGTTGGCCCGGTCGGGATGATCCTGTGATGTACGTCATGTCATTGGCATTTGTGTTTGTTCTGGCCGTGCTTGCTGAGTGGCTCTCCCACTGCAGTTTTCTCAAGTCTAGCGCAAACAACTTCGAGGGTGGGGAGGTGGCGGACTTGTTTGTATATTGGGCGGTCTGGGATGTCGTATTTGGTAATGCTCGCCGTCATGTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

109

Amino Acids

12.36

Weight (kDa)

5.58

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	32, 263, 284
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	93
AhlI	ACTAGT	1 cut(s)	56
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	128, 186
ApeKI	GCWGC	2 cut(s)	5, 40
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	27
BceAI	ACGGC	3 cut(s)	28, 173, 300
BcnI	CCSGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	2 cut(s)	57, 231
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	2 cut(s)	6, 41
BlsI	GCNGC	2 cut(s)	7, 42
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	75, 145, 298
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	130, 188
BsiEI	CGRYCG	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	93
BsnI	GGCC	2 cut(s)	130, 188
BsoBI	CYCGRG	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	3 cut(s)	32, 263, 284
BspANI	GGCC	2 cut(s)	130, 188
BspCNI	CTCAG	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	23, 27, 195, 313
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	75, 145, 298
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 40, 194
BstNSI	RCATGY	2 cut(s)	25, 29
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	130, 188
BtsCI	GGATG	3 cut(s)	75, 145, 298
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	4 cut(s)	23, 27, 195, 313
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	5 cut(s)	14, 22, 26, 160, 320
CviJI	RGCY	4 cut(s)	5, 130, 188, 205
CviKI_1	RGCY	4 cut(s)	5, 130, 188, 205
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	21, 278
Eco88I	CYCGRG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	5 cut(s)	17, 25, 29, 163, 323
FaiI	YATR	7 cut(s)	15, 23, 27, 83, 161, 277, 321
FatI	CATG	5 cut(s)	13, 21, 25, 159, 319
Fnu4HI	GCNGC	2 cut(s)	6, 41
FokI	GGATG	3 cut(s)	82, 152, 305
Fsp4HI	GCNGC	2 cut(s)	6, 41
FspBI	CTAG	2 cut(s)	57, 231
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	6, 41
HaeIII	GGCC	2 cut(s)	130, 188
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	17, 25, 29, 163, 323
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	25, 216
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 40, 194
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	17, 25, 29, 163, 323
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	5 cut(s)	79, 145, 159, 170, 274
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	2 cut(s)	57, 231
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	82, 109
MnlI	CCTC	3 cut(s)	103, 241, 250
Mph1103I	ATGCAT	1 cut(s)	27
MseI	TTAA	2 cut(s)	48, 328
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	31, 40, 194
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	17, 25, 29, 163, 323
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	2 cut(s)	25, 29
PaeI	GCATGC	2 cut(s)	25, 29
PkrI	GCNGC	2 cut(s)	7, 42
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	48, 328
SatI	GCNGC	2 cut(s)	6, 41
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	4 cut(s)	89, 114, 159, 261
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	56
SphI	GCATGC	2 cut(s)	25, 29
SsiI	CCGC	3 cut(s)	32, 263, 284
SspMI	CTAG	2 cut(s)	57, 231
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	48, 328
Tru9I	TTAA	2 cut(s)	48, 328
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	5, 40
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	218
XceI	RCATGY	2 cut(s)	25, 29
XspI	CTAG	2 cut(s)	57, 231
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.