Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

31013764 .. 31019822

Gene Structure 6059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGACCCACAGAACGCCACCGCCACCGCCACCGCCACTCCTCTAATCCCCTCCTCCTCTGAAACACCACAACTCCCACCCCCCAGCCCCAATCGCAACCTCAGCCGCCCCCCTTCAACCTCAGCCCCAATCCCTCCGTCTCCGTCTCCGTCTCCAAACCCTAACCCTAAACCCTCAACCGCATCATTACCACCGCAGTCCCTCCCAGCCCCTGCTCATACTCGACCTCCCCCCACATTGAATCGCCCATGGCCGCAGCCGCCTCACTACTCCCACCACTACCCCTCCCCTTCTTCTTCCGCTTCCTCTGTGCCTCCGGCGCCGTCGGTCTCCGGGCCTCCTCCGAGGGGCGGCATTGCCATTGGTGTCCCGGCGCACCACTCCGGCCCCCCTCCCCCTCAGCCCACTCCGTATACCTCATCTTACGGCCATTTCGGCGGCATCGGCCGCGGCGGCGGTGTTGGTGTGCCTGAACCCTCATCCAATGCCAATGCTTCTCAGGTCAGACCGGTGAGACCGCAGATGCCAGGAATGCAGGGAATGGGGATGATGGGCTCGCTTGGTTCGACTTCTCAGATGCGCCCAGTTGGGATTTCTCCACACCATCCACAGAGACCTGTTCAATCCCCTCTTAGGCCACCATCTACCGCAAGTAATCAGTCCCCTACTTCCCAAAATTTCCAAGGGCATAACCTTTCAAGAGCCTCATCATTGGGATCTCCTAGTTCACCAAATACATCTCAAGTTTTACCGCTGCATAATCAGCCATGGTTATCTGGATCACAAGGGAAGCCTCCTATACCCTCCTCTCCGTATAGGCAGCAGATGACCTCGACATCGATGCTGCAAAGATCACATCTTCCGCAGCCGCAGCAACAACAACAACAACACCATCCCCTTCCTACGGCTACACAGCAACAGCAGCAAGGACCCATGCCTACAGCTTCACCACAACAGCATATGCCATCTGTGCAGCATCAACAATCTTCCTCCTCACATCAAGGACATGATCATTTTGGGCAACAAACTCAACCATCAAGGATCCCACAAGCTTCACCGCGTCAGCAACAAAATTCAAGGGTCCAGGTCCCAGTAAACCAGAAGTCTTCCCCACTTGCAGCAGCACAGCCTAACACAGTCCAATCAGCACCGCAAAATAGAATCAATAGTGCAGAAACTGAGGAACCTTGTAACAGAATTCTTAGCAAAAGAACCATTCATGATCTAGTCAACCAGATCGATCCATCTGAGAGATTGGATCCAGATGTTGAAGACATTCTCATGGACATTGCAGATGAATTTGTAGAATCTATAAAGAAGTCCATGGTAGCTACTGAGACAGCAAATACGAGGAGTACTGCAGGGCAAGCTACTGGAAATGCAAAGGGTGGTGTAAAGGCGCCTGCCAATATAAGCTCCCAAAATATCAAAATGCGTGAAAGGGTGGAGCGCATGAATGTGAGCAAGAGTCAGATTGTGATTGTCAGCATTCTTGAGGGTGTCCATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

503

Amino Acids

53.45

Weight (kDa)

10.25

Isoelectric Point (pI)

84.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_20kDa	PF03847	402 - 443	2.1e-13	Transcription initiation factor TFIID subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	319, 1399
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	2 cut(s)	450, 1060
AclWI	GGATC	7 cut(s)	724, 787, 1036, 1049, 1235, 1253, 1266
AcoI	YGGCCR	3 cut(s)	251, 427, 445
AcsI	RAATTY	4 cut(s)	676, 1072, 1197, 1298
AcyI	GRCGYC	2 cut(s)	320, 1400
AfaI	GTAC	1 cut(s)	1357
AfiI	CCNNNNNNNGG	4 cut(s)	347, 350, 633, 904
AgeI	ACCGGT	1 cut(s)	508
AgsI	TTSAA	6 cut(s)	117, 241, 623, 699, 1077, 1271
AjnI	CCWGG	2 cut(s)	526, 1083
AluBI	AGCT	5 cut(s)	944, 1052, 1331, 1370, 1416
AluI	AGCT	5 cut(s)	944, 1052, 1331, 1370, 1416
Alw26I	GTCTC	7 cut(s)	144, 150, 156, 334, 508, 607, 1331
AlwI	GGATC	7 cut(s)	724, 787, 1036, 1049, 1235, 1253, 1266
AlwNI	CAGNNNCTG	2 cut(s)	212, 1178
AoxI	GGCC	6 cut(s)	251, 335, 385, 427, 445, 635
ApoI	RAATTY	4 cut(s)	676, 1072, 1197, 1298
AsiGI	ACCGGT	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	1275
AspLEI	GCGC	5 cut(s)	322, 376, 582, 1402, 1452
AspS9I	GGNCC	6 cut(s)	4, 335, 386, 929, 1081, 1087
AsuC2I	CCSGG	2 cut(s)	334, 371
AsuHPI	GGTGA	4 cut(s)	523, 720, 939, 1047
AvaII	GGWCC	4 cut(s)	4, 929, 1081, 1087
BamHI	GGATCC	2 cut(s)	1041, 1258
BanI	GGYRCC	2 cut(s)	319, 1399
BanII	GRGCYC	1 cut(s)	557
BbsI	GAAGAC	2 cut(s)	1098, 1278
BbvCI	CCTCAGC	3 cut(s)	101, 121, 399
BccI	CCATC	7 cut(s)	544, 612, 649, 900, 973, 1042, 1252
BceAI	ACGGC	3 cut(s)	307, 442, 921
BcgI	CGANNNNNNTGC	2 cut(s)	823, 857
BciT130I	CCWGG	2 cut(s)	528, 1085
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	2 cut(s)	334, 371
BcoDI	GTCTC	7 cut(s)	144, 150, 156, 334, 508, 607, 1331
BfaI	CTAG	2 cut(s)	723, 1226
BfmI	CTRYAG	2 cut(s)	939, 1359
BfoI	RGCGCY	2 cut(s)	323, 1403
BglI	GCCNNNNNGGC	2 cut(s)	435, 453
BmcAI	AGTACT	1 cut(s)	1357
Bme1390I	CCNGG	4 cut(s)	334, 371, 528, 1085
Bme18I	GGWCC	4 cut(s)	4, 929, 1081, 1087
BmgT120I	GGNCC	6 cut(s)	4, 335, 386, 929, 1081, 1087
BmrFI	CCNGG	4 cut(s)	334, 371, 528, 1085
BmrI	ACTGGG	2 cut(s)	578, 1085
BmsI	GCATC	6 cut(s)	191, 450, 513, 567, 831, 985
BmuI	ACTGGG	2 cut(s)	578, 1085
BpiI	GAAGAC	2 cut(s)	1098, 1278
Bpu10I	CCTNAGC	3 cut(s)	101, 121, 399
BpuEI	CTTGAG	1 cut(s)	726
BpuMI	CCSGG	2 cut(s)	334, 371
Bsa29I	ATCGAT	2 cut(s)	839, 1239
BsaHI	GRCGYC	2 cut(s)	320, 1400
BsaI	GGTCTC	3 cut(s)	334, 508, 607
BsaJI	CCNNGG	6 cut(s)	248, 344, 448, 682, 767, 1323
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	8 cut(s)	22, 52, 57, 87, 211, 241, 269, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 350, 633, 904
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	584, 1091, 1378
Bse3DI	GCAATG	2 cut(s)	354, 1287
BseBI	CCWGG	2 cut(s)	528, 1085
BseCI	ATCGAT	2 cut(s)	839, 1239
BseDI	CCNNGG	6 cut(s)	248, 344, 448, 682, 767, 1323
BseGI	GGATG	4 cut(s)	479, 552, 604, 892
BseLI	CCNNNNNNNGG	4 cut(s)	347, 350, 633, 904
BseMI	GCAATG	2 cut(s)	354, 1287
BseMII	CTCAG	8 cut(s)	115, 135, 413, 512, 587, 1170, 1239, 1326
BseNI	ACTGG	3 cut(s)	584, 1091, 1378
BseRI	GAGGAG	7 cut(s)	30, 43, 46, 330, 796, 982, 1366
BseX3I	CGGCCG	1 cut(s)	445
BseYI	CCCAGC	2 cut(s)	83, 205
BsgI	GTGCAG	2 cut(s)	992, 1191
Bsh1236I	CGCG	2 cut(s)	450, 1060
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	6 cut(s)	253, 337, 387, 429, 447, 637
BshNI	GGYRCC	2 cut(s)	319, 1399
BshTI	ACCGGT	1 cut(s)	508
BshVI	ATCGAT	2 cut(s)	839, 1239
BsiEI	CGRYCG	1 cut(s)	448
BsiSI	CCGG	5 cut(s)	317, 333, 371, 384, 509
BslFI	GGGAC	4 cut(s)	184, 353, 646, 1073
BslI	CCNNNNNNNGG	4 cut(s)	347, 350, 633, 904
BsmAI	GTCTC	7 cut(s)	144, 150, 156, 334, 508, 607, 1331
BsmBI	CGTCTC	3 cut(s)	144, 150, 156
BsmFI	GGGAC	4 cut(s)	184, 353, 646, 1073
BsmI	GAATGC	2 cut(s)	537, 1488
BsnI	GGCC	6 cut(s)	253, 337, 387, 429, 447, 637
Bso31I	GGTCTC	3 cut(s)	334, 508, 607
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
Bsp19I	CCATGG	3 cut(s)	248, 767, 1323
BspANI	GGCC	6 cut(s)	253, 337, 387, 429, 447, 637
BspCNI	CTCAG	8 cut(s)	114, 134, 412, 511, 586, 1171, 1240, 1327
BspDI	ATCGAT	2 cut(s)	839, 1239
BspFNI	CGCG	2 cut(s)	450, 1060
BspHI	TCATGA	1 cut(s)	1219
BspMAI	CTGCAG	1 cut(s)	1363
BspPI	GGATC	7 cut(s)	724, 787, 1036, 1049, 1235, 1253, 1266
BspT107I	GGYRCC	2 cut(s)	319, 1399
BspTNI	GGTCTC	3 cut(s)	334, 508, 607
BsrDI	GCAATG	2 cut(s)	354, 1287
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	584, 1091, 1378
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	6 cut(s)	248, 344, 448, 682, 767, 1323
BssMI	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
BssNAI	GTATAC	1 cut(s)	414
BssNI	GRCGYC	2 cut(s)	320, 1400
BssT1I	CCWWGG	4 cut(s)	248, 682, 767, 1323
Bst1107I	GTATAC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	528, 1085
Bst4CI	ACNGT	1 cut(s)	1138
BstACI	GRCGYC	2 cut(s)	320, 1400
BstC8I	GCNNGC	3 cut(s)	557, 1368, 1404
BstDSI	CCRYGG	4 cut(s)	248, 448, 767, 1323
BstF5I	GGATG	4 cut(s)	479, 552, 604, 892
BstFNI	CGCG	2 cut(s)	450, 1060
BstH2I	RGCGCY	2 cut(s)	323, 1403
BstHHI	GCGC	5 cut(s)	322, 376, 582, 1402, 1452
BstKTI	GATC	9 cut(s)	719, 782, 854, 1012, 1044, 1225, 1239, 1243, 1261
BstMAI	GTCTC	7 cut(s)	144, 150, 156, 334, 508, 607, 1331
BstMBI	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
BstMCI	CGRYCG	1 cut(s)	448
BstNI	CCWGG	2 cut(s)	528, 1085
BstSCI	CCNGG	4 cut(s)	332, 369, 526, 1083
BstSFI	CTRYAG	2 cut(s)	939, 1359
BstUI	CGCG	2 cut(s)	450, 1060
BstV2I	GAAGAC	2 cut(s)	1098, 1278
BstX2I	RGATCY	3 cut(s)	716, 1041, 1258
BstYI	RGATCY	3 cut(s)	716, 1041, 1258
BstZ17I	GTATAC	1 cut(s)	414
BstZI	CGGCCG	1 cut(s)	445
Bsu15I	ATCGAT	2 cut(s)	839, 1239
BsuRI	GGCC	6 cut(s)	253, 337, 387, 429, 447, 637
BsuTUI	ATCGAT	2 cut(s)	839, 1239
BtgI	CCRYGG	4 cut(s)	248, 448, 767, 1323
BtsCI	GGATG	4 cut(s)	479, 552, 604, 892
Cac8I	GCNNGC	3 cut(s)	557, 1368, 1404
CaiI	CAGNNNCTG	2 cut(s)	212, 1178
CciI	TCATGA	1 cut(s)	1219
CfoI	GCGC	5 cut(s)	322, 376, 582, 1402, 1452
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	6 cut(s)	4, 335, 386, 929, 1081, 1087
Cfr42I	CCGCGG	1 cut(s)	451
ClaI	ATCGAT	2 cut(s)	839, 1239
CseI	GACGC	1 cut(s)	1049
Csp6I	GTAC	1 cut(s)	1356
CspAI	ACCGGT	1 cut(s)	508
CviAII	CATG	9 cut(s)	249, 768, 934, 1007, 1220, 1282, 1324, 1453, 1505
CviQI	GTAC	1 cut(s)	1356
DinI	GGCGCC	2 cut(s)	321, 1401
DpnI	GATC	9 cut(s)	718, 781, 853, 1011, 1043, 1224, 1238, 1242, 1260
DpnII	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
EaeI	YGGCCR	3 cut(s)	251, 427, 445
EagI	CGGCCG	1 cut(s)	445
EclXI	CGGCCG	1 cut(s)	445
Eco130I	CCWWGG	4 cut(s)	248, 682, 767, 1323
Eco24I	GRGCYC	1 cut(s)	557
Eco31I	GGTCTC	3 cut(s)	334, 508, 607
Eco47I	GGWCC	4 cut(s)	4, 929, 1081, 1087
Eco52I	CGGCCG	1 cut(s)	445
EcoO109I	RGGNCCY	2 cut(s)	929, 1087
EcoRI	GAATTC	1 cut(s)	1197
EcoRII	CCWGG	2 cut(s)	526, 1083
EcoT14I	CCWWGG	4 cut(s)	248, 682, 767, 1323
EcoT38I	GRGCYC	1 cut(s)	557
EgeI	GGCGCC	2 cut(s)	321, 1401
EheI	GGCGCC	2 cut(s)	321, 1401
ErhI	CCWWGG	4 cut(s)	248, 682, 767, 1323
Esp3I	CGTCTC	3 cut(s)	144, 150, 156
FaeI	CATG	9 cut(s)	252, 771, 937, 1010, 1223, 1285, 1327, 1456, 1508
FaqI	GGGAC	4 cut(s)	184, 353, 646, 1073
FatI	CATG	9 cut(s)	248, 767, 933, 1006, 1219, 1281, 1323, 1452, 1504
FauNDI	CATATG	1 cut(s)	960
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	413
FokI	GGATG	4 cut(s)	466, 559, 591, 879
FriOI	GRGCYC	1 cut(s)	557
FspBI	CTAG	2 cut(s)	723, 1226
GlaI	GCGC	5 cut(s)	321, 375, 581, 1401, 1451
GsaI	CCCAGC	2 cut(s)	87, 209
HaeII	RGCGCY	2 cut(s)	323, 1403
HaeIII	GGCC	6 cut(s)	253, 337, 387, 429, 447, 637
HapII	CCGG	5 cut(s)	317, 333, 371, 384, 509
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	5 cut(s)	322, 376, 582, 1402, 1452
Hin1I	GRCGYC	2 cut(s)	320, 1400
Hin1II	CATG	9 cut(s)	252, 771, 937, 1010, 1223, 1285, 1327, 1456, 1508
Hin6I	GCGC	5 cut(s)	320, 374, 580, 1400, 1450
HinP1I	GCGC	5 cut(s)	320, 374, 580, 1400, 1450
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HindIII	AAGCTT	1 cut(s)	1050
HinfI	GANTC	4 cut(s)	241, 1161, 1307, 1468
HpaII	CCGG	5 cut(s)	317, 333, 371, 384, 509
HphI	GGTGA	4 cut(s)	523, 720, 939, 1047
Hpy166II	GTNNAC	4 cut(s)	414, 728, 1096, 1231
Hpy188I	TCNGA	6 cut(s)	61, 345, 506, 576, 1249, 1473
Hpy188III	TCNNGA	5 cut(s)	699, 777, 1220, 1262, 1493
Hpy8I	GTNNAC	4 cut(s)	414, 728, 1096, 1231
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	123, 300, 908
HpyCH4III	ACNGT	1 cut(s)	1138
HpyCH4V	TGCA	9 cut(s)	535, 757, 847, 973, 1118, 1172, 1292, 1361, 1382
Hsp92I	GRCGYC	2 cut(s)	320, 1400
Hsp92II	CATG	9 cut(s)	252, 771, 937, 1010, 1223, 1285, 1327, 1456, 1508
HspAI	GCGC	5 cut(s)	320, 374, 580, 1400, 1450
KasI	GGCGCC	2 cut(s)	319, 1399
Ksp22I	TGATCA	1 cut(s)	1009
KspI	CCGCGG	1 cut(s)	451
Kzo9I	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
LmnI	GCTCC	2 cut(s)	1421, 1447
LweI	GCATC	6 cut(s)	191, 450, 513, 567, 831, 985
MaeI	CTAG	2 cut(s)	723, 1226
MaeIII	GTNAC	1 cut(s)	1190
MalI	GATC	9 cut(s)	718, 781, 853, 1011, 1043, 1224, 1238, 1242, 1260
MboI	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
MboII	GAAGA	6 cut(s)	285, 288, 851, 978, 1098, 1283
MflI	RGATCY	3 cut(s)	716, 1041, 1258
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	4 cut(s)	676, 1072, 1197, 1298
Mly113I	GGCGCC	2 cut(s)	320, 1400
MlyI	GAGTC	1 cut(s)	1477
MroXI	GAANNNNTTC	1 cut(s)	1275
MslI	CAYNNNNRTG	2 cut(s)	1280, 1457
MspA1I	CMGCKG	2 cut(s)	450, 754
MspI	CCGG	5 cut(s)	317, 333, 371, 384, 509
MspR9I	CCNGG	4 cut(s)	334, 371, 528, 1085
Mva1269I	GAATGC	2 cut(s)	537, 1488
MvaI	CCWGG	2 cut(s)	528, 1085
MvnI	CGCG	2 cut(s)	450, 1060
NarI	GGCGCC	2 cut(s)	320, 1400
NciI	CCSGG	2 cut(s)	334, 371
NcoI	CCATGG	3 cut(s)	248, 767, 1323
NdeI	CATATG	1 cut(s)	960
NdeII	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
NlaIII	CATG	9 cut(s)	252, 771, 937, 1010, 1223, 1285, 1327, 1456, 1508
PagI	TCATGA	1 cut(s)	1219
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PctI	GAATGC	2 cut(s)	537, 1488
PdmI	GAANNNNTTC	1 cut(s)	1275
PfeI	GAWTC	3 cut(s)	241, 1161, 1307
PinAI	ACCGGT	1 cut(s)	508
PleI	GAGTC	1 cut(s)	1476
PluTI	GGCGCC	2 cut(s)	323, 1403
PpsI	GAGTC	1 cut(s)	1476
PpuMI	RGGWCCY	2 cut(s)	929, 1087
Psp5II	RGGWCCY	2 cut(s)	929, 1087
Psp6I	CCWGG	2 cut(s)	526, 1083
PspFI	CCCAGC	2 cut(s)	83, 205
PspGI	CCWGG	2 cut(s)	526, 1083
PspPI	GGNCC	6 cut(s)	4, 335, 386, 929, 1081, 1087
PspPPI	RGGWCCY	2 cut(s)	929, 1087
PstI	CTGCAG	1 cut(s)	1363
PstNI	CAGNNNCTG	2 cut(s)	212, 1178
PsuI	RGATCY	3 cut(s)	716, 1041, 1258
RsaI	GTAC	1 cut(s)	1357
RsaNI	GTAC	1 cut(s)	1356
RseI	CAYNNNNRTG	2 cut(s)	1280, 1457
SacII	CCGCGG	1 cut(s)	451
Sau3AI	GATC	9 cut(s)	716, 779, 851, 1009, 1041, 1222, 1236, 1240, 1258
Sau96I	GGNCC	6 cut(s)	4, 335, 386, 929, 1081, 1087
ScaI	AGTACT	1 cut(s)	1357
SchI	GAGTC	1 cut(s)	1477
ScrFI	CCNGG	4 cut(s)	334, 371, 528, 1085
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	6 cut(s)	191, 450, 513, 567, 831, 985
SfcI	CTRYAG	2 cut(s)	939, 1359
SfoI	GGCGCC	2 cut(s)	321, 1401
Sfr303I	CCGCGG	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	451
SinI	GGWCC	4 cut(s)	4, 929, 1081, 1087
SmiMI	CAYNNNNRTG	2 cut(s)	1280, 1457
SmlI	CTYRAG	2 cut(s)	741, 1493
SmoI	CTYRAG	2 cut(s)	741, 1493
Sse9I	AATT	4 cut(s)	676, 1072, 1197, 1298
SspDI	GGCGCC	2 cut(s)	319, 1399
SspMI	CTAG	2 cut(s)	723, 1226
StyD4I	CCNGG	4 cut(s)	332, 369, 526, 1083
StyI	CCWWGG	4 cut(s)	248, 682, 767, 1323
TaaI	ACNGT	1 cut(s)	1138
TaqI	TCGA	5 cut(s)	223, 566, 833, 839, 1239
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	4 cut(s)	676, 1072, 1197, 1298
TatI	WGTACW	1 cut(s)	1355
TauI	GCSGC	9 cut(s)	108, 256, 262, 354, 441, 450, 453, 456, 871
TfiI	GAWTC	3 cut(s)	241, 1161, 1307
TspDTI	ATGAA	3 cut(s)	1208, 1311, 1469
TspGWI	ACGGA	5 cut(s)	126, 132, 138, 399, 801
VpaK11BI	GGWCC	4 cut(s)	4, 929, 1081, 1087
XapI	RAATTY	4 cut(s)	676, 1072, 1197, 1298
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	1275
XspI	CTAG	2 cut(s)	723, 1226
ZrmI	AGTACT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.