pycom12g02150

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
1858543 .. 1861453
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02150.4

Sequence Viewer

Length: 1479 bp
ATGCTCGCATTCTACCCAAAATTTCCCTCCTTCCCAACACCCCAACAAACTGACATGGACCAACAGAACTCCACCACCACCCCAACTCCCTCCACCTCCCAACCAACAACCGAATCACCCCCAACCGCCAAATCCCAGCCTCCACCTCAGCCTCAGCCACCGGCGCCCTCCTCCTTACCAACCACTCCAACCTCCACCCCAACCCCCCCTCCCCCAAACCCTAACCCTAACCCTAAACCCTCCACCCCATTACCCCCACAACCACTACTTCAACCGCAACCGCCACCCCAGTCGCTTCCACCCCCTTCGCAGCCCAGAACTCCCTCCACATTGGCTCGTCCTCCCCCCTGGCAGCAGTCCCACTTCCACCACTACCCTTCGCCTTCTTCTTCCGCTTCGTCTGGGCCTCCTCCTCCGCCGCCTTCAGCCTCCCAGCCTCCCCCGCCGAGGGGCGGCATTTCCATTGGTGTTCCCGCGCATCACAGCGGCCCTTCTCCTCCCCAACCCGCTCCGTATTCGTCTTCCTATGGGCATCATTTTGGTGGGATGGGCCGCGGCGGTGTCTCTGTGCCTGAATCTGTATCCAATTCCAGTCCTTCCCAGGTGAGACCGTCAATGCAGGGAATGGGGATGATGGGTTCACTCGGTTCTAGTTCTCAAATGCGGCCAACTGGGATTCCGGCACATCATACACAGAGGCCAGTTCAATCCTCTGTGAGGCCGCCATCTACTGCGAGTCATCAGTCCCCGTCTTCCCAAAATTTCCAAGGGCACAGCCTTTTACGAGTTTCATCAGTGGGATCTGGTTCATCACCAAATACATCTCCAGGTTTGCAGCCTCATACTCAGCCATGGTTGTCATCTGGGTCACAAGGGAAGCCGCCTATGCCATCCCCTTCATATAGGCAGCAGATGAACTCGCCATCCATGCAGCAAAGGTCGCATCTTCCGCAGCAACAGCCCCATCCTACAGCTCCCCAGCAGCAGCACCATTCCATGCCTTCAGCTTCACAGCAGAAGCACCATCCACTGCCTTCTGCTTCACCGCAACAGCACCATCCCATGCCTTCAGCTTCACAGCAACAGCATACATCATCTGCGCAACATCAACAACCTTCCTCATCACATCAGGGTCCCGAGCATTTTGGCCAACAAGTTCAGCCATCAAGGGTCCCACAAACCATGCCTCGTCAGCAACAAATCACAAGGGTTCAGGGCCCTGTAAATCCCAAGTCTTCTACTCTTGTAGCTGCACAGCCTAACGCGGTCCAATCAGGGGCCCAAAATAAAACACCTAGTCCAGAAACTGATGAATCTTGTAATAGAATTCTTGGCAAAAGAAGCATCCGTGAGCTAGTCAACCAGATTGATCCATCTGAGAAGTTGGATCCAGAAGTTGAAGAAATTCTCATGGATGTTGCAGATACTGGGCCTTTTTGTATGCTGCTAACCATGGCTATTTTTAGCTTCTTCATATAA

Protein Analysis

493

Amino Acids

52.42

Weight (kDa)

9.89

Isoelectric Point (pI)

92.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1101
AccB1I GGYRCC 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 509
AccII CGCG 3 cut(s) 476, 555, 1265
AclWI GGATC 4 cut(s) 808, 1364, 1382, 1395
AcoI YGGCCR 2 cut(s) 665, 1147
AcsI RAATTY 4 cut(s) 20, 760, 1326, 1404
AcuI CTGAAG 3 cut(s) 408, 987, 1053
AcyI GRCGYC 1 cut(s) 164
AfiI CCNNNNNNNGG 6 cut(s) 447, 448, 449, 452, 717, 1276
AgsI TTSAA 3 cut(s) 272, 707, 1400
AjnI CCWGG 3 cut(s) 347, 600, 826
AloI GAACNNNNNNTCC 4 cut(s) 622, 654, 908, 940
AluBI AGCT 6 cut(s) 974, 1007, 1073, 1250, 1354, 1467
AluI AGCT 6 cut(s) 974, 1007, 1073, 1250, 1354, 1467
Alw26I GTCTC 2 cut(s) 568, 601
AlwI GGATC 4 cut(s) 808, 1364, 1382, 1395
AlwNI CAGNNNCTG 2 cut(s) 1307, 1427
Ama87I CYCGRG 1 cut(s) 1136
ApaI GGGCCC 2 cut(s) 1220, 1282
ApoI RAATTY 4 cut(s) 20, 760, 1326, 1404
Asp700I GAANNNNTTC 1 cut(s) 1404
AspLEI GCGC 3 cut(s) 166, 478, 1102
AsuHPI GGTGA 4 cut(s) 108, 616, 804, 1035
AvaI CYCGRG 1 cut(s) 1136
AvaII GGWCC 4 cut(s) 58, 1133, 1171, 1267
BaeGI GKGCMC 3 cut(s) 774, 1220, 1282
BalI TGGCCA 1 cut(s) 1149
BamHI GGATCC 1 cut(s) 1387
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 1220, 1282
BbsI GAAGAC 3 cut(s) 513, 744, 1227
BbvCI CCTCAGC 2 cut(s) 147, 153
BciT130I CCWGG 3 cut(s) 349, 602, 828
BciVI GTATCC 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 568, 601
BfaI CTAG 3 cut(s) 651, 1296, 1355
BfmI CTRYAG 1 cut(s) 969
BfoI RGCGCY 1 cut(s) 167
BfuI GTATCC 1 cut(s) 592
Bme1390I CCNGG 3 cut(s) 349, 602, 828
Bme18I GGWCC 4 cut(s) 58, 1133, 1171, 1267
BmeT110I CYCGRG 1 cut(s) 1136
BmiI GGNNCC 9 cut(s) 165, 1134, 1135, 1172, 1173, 1218, 1279, 1280, 1389
BmrFI CCNGG 3 cut(s) 349, 602, 828
BmrI ACTGGG 3 cut(s) 283, 681, 1437
BmsI GCATC 4 cut(s) 487, 541, 952, 1353
BmuI ACTGGG 3 cut(s) 283, 681, 1437
BpiI GAAGAC 3 cut(s) 513, 744, 1227
BpmI CTGGAG 1 cut(s) 810
Bpu10I CCTNAGC 2 cut(s) 147, 153
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 7 cut(s) 347, 446, 553, 600, 766, 851, 1452
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 193, 223
Bsc4I CCNNNNNNNGG 6 cut(s) 447, 448, 449, 452, 717, 1276
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 5 cut(s) 289, 591, 676, 701, 1432
BseBI CCWGG 3 cut(s) 349, 602, 828
BseDI CCNNGG 7 cut(s) 347, 446, 553, 600, 766, 851, 1452
BseGI GGATG 9 cut(s) 552, 636, 890, 923, 964, 1024, 1057, 1344, 1420
BseLI CCNNNNNNNGG 6 cut(s) 447, 448, 449, 452, 717, 1276
BseMII CTCAG 4 cut(s) 161, 167, 860, 1368
BseNI ACTGG 5 cut(s) 289, 591, 676, 701, 1432
BseRI GAGGAG 4 cut(s) 160, 399, 402, 486
BseSI GKGCMC 3 cut(s) 774, 1220, 1282
BseYI CCCAGC 3 cut(s) 135, 432, 978
BsgI GTGCAG 1 cut(s) 1236
Bsh1236I CGCG 3 cut(s) 476, 555, 1265
BshNI GGYRCC 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 1136
BsiSI CCGG 2 cut(s) 161, 680
BslFI GGGAC 4 cut(s) 343, 730, 1119, 1157
BslI CCNNNNNNNGG 6 cut(s) 447, 448, 449, 452, 717, 1276
BsmAI GTCTC 2 cut(s) 568, 601
BsmFI GGGAC 4 cut(s) 343, 730, 1119, 1157
BsmI GAATGC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 1136
Bsp120I GGGCCC 2 cut(s) 1216, 1278
Bsp1286I GDGCHC 3 cut(s) 774, 1220, 1282
Bsp143I GATC 3 cut(s) 800, 1369, 1387
Bsp19I CCATGG 2 cut(s) 851, 1452
BspCNI CTCAG 4 cut(s) 160, 166, 859, 1369
BspFNI CGCG 3 cut(s) 476, 555, 1265
BspLI GGNNCC 9 cut(s) 165, 1134, 1135, 1172, 1173, 1218, 1279, 1280, 1389
BspPI GGATC 4 cut(s) 808, 1364, 1382, 1395
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 5 cut(s) 289, 591, 676, 701, 1432
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 7 cut(s) 347, 446, 553, 600, 766, 851, 1452
BssMI GATC 3 cut(s) 800, 1369, 1387
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 3 cut(s) 766, 851, 1452
Bst2UI CCWGG 3 cut(s) 349, 602, 828
Bst4CI ACNGT 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 147, 153, 846, 1377
BstDSI CCRYGG 3 cut(s) 553, 851, 1452
BstENI CCTNNNNNAGG 1 cut(s) 715
BstF5I GGATG 9 cut(s) 552, 636, 890, 923, 964, 1024, 1057, 1344, 1420
BstFNI CGCG 3 cut(s) 476, 555, 1265
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 3 cut(s) 166, 478, 1102
BstKTI GATC 3 cut(s) 803, 1372, 1390
BstMAI GTCTC 2 cut(s) 568, 601
BstMBI GATC 3 cut(s) 800, 1369, 1387
BstMWI GCNNNNNNNGC 9 cut(s) 163, 442, 886, 928, 940, 949, 958, 1192, 1341
BstNI CCWGG 3 cut(s) 349, 602, 828
BstSCI CCNGG 3 cut(s) 347, 600, 826
BstSFI CTRYAG 1 cut(s) 969
BstSLI GKGCMC 3 cut(s) 774, 1220, 1282
BstUI CGCG 3 cut(s) 476, 555, 1265
BstV2I GAAGAC 3 cut(s) 513, 744, 1227
BstX2I RGATCY 2 cut(s) 800, 1387
BstYI RGATCY 2 cut(s) 800, 1387
BsuI GTATCC 1 cut(s) 592
BtgI CCRYGG 3 cut(s) 553, 851, 1452
BtsCI GGATG 9 cut(s) 552, 636, 890, 923, 964, 1024, 1057, 1344, 1420
BtsI GCAGTG 1 cut(s) 1028
BtsIMutI CAGTG 2 cut(s) 801, 1028
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 2 cut(s) 1307, 1427
CfoI GCGC 3 cut(s) 166, 478, 1102
Cfr10I RCCGGY 1 cut(s) 160
Cfr42I CCGCGG 1 cut(s) 556
CviAII CATG 8 cut(s) 55, 852, 928, 997, 1063, 1183, 1411, 1453
DdeI CTNAG 4 cut(s) 147, 153, 846, 1377
DinI GGCGCC 1 cut(s) 165
DpnI GATC 3 cut(s) 802, 1371, 1389
DpnII GATC 3 cut(s) 800, 1369, 1387
EaeI YGGCCR 2 cut(s) 665, 1147
EciI GGCGGA 1 cut(s) 405
Eco130I CCWWGG 3 cut(s) 766, 851, 1452
Eco24I GRGCYC 2 cut(s) 1220, 1282
Eco31I GGTCTC 1 cut(s) 601
Eco47I GGWCC 4 cut(s) 58, 1133, 1171, 1267
Eco57I CTGAAG 3 cut(s) 408, 987, 1053
Eco88I CYCGRG 1 cut(s) 1136
EcoNI CCTNNNNNAGG 1 cut(s) 715
EcoO109I RGGNCCY 5 cut(s) 1133, 1171, 1216, 1217, 1278
EcoRI GAATTC 1 cut(s) 1326
EcoRII CCWGG 3 cut(s) 347, 600, 826
EcoT14I CCWWGG 3 cut(s) 766, 851, 1452
EcoT38I GRGCYC 2 cut(s) 1220, 1282
EgeI GGCGCC 1 cut(s) 165
EheI GGCGCC 1 cut(s) 165
ErhI CCWWGG 3 cut(s) 766, 851, 1452
FaeI CATG 8 cut(s) 58, 855, 931, 1000, 1066, 1186, 1414, 1456
FaqI GGGAC 4 cut(s) 343, 730, 1119, 1157
FatI CATG 8 cut(s) 54, 851, 927, 996, 1062, 1182, 1410, 1452
FauI CCCGC 3 cut(s) 450, 481, 514
FokI GGATG 9 cut(s) 559, 643, 877, 910, 951, 1011, 1044, 1331, 1427
FriOI GRGCYC 2 cut(s) 1220, 1282
FspBI CTAG 3 cut(s) 651, 1296, 1355
FspI TGCGCA 1 cut(s) 1101
GlaI GCGC 3 cut(s) 165, 477, 1101
GsaI CCCAGC 3 cut(s) 139, 436, 982
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 167
HapII CCGG 2 cut(s) 161, 680
HhaI GCGC 3 cut(s) 166, 478, 1102
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 8 cut(s) 58, 855, 931, 1000, 1066, 1186, 1414, 1456
Hin6I GCGC 3 cut(s) 164, 476, 1100
HinP1I GCGC 3 cut(s) 164, 476, 1100
HincII GTYRAC 1 cut(s) 1360
HindII GTYRAC 1 cut(s) 1360
HinfI GANTC 5 cut(s) 113, 575, 676, 736, 1313
HpaII CCGG 2 cut(s) 161, 680
HphI GGTGA 4 cut(s) 108, 616, 804, 1035
Hpy166II GTNNAC 2 cut(s) 641, 1360
Hpy188I TCNGA 1 cut(s) 1378
Hpy188III TCNNGA 3 cut(s) 1136, 1301, 1391
Hpy8I GTNNAC 2 cut(s) 641, 1360
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4V TGCA 5 cut(s) 619, 835, 931, 1253, 1421
HpyF10VI GCNNNNNNNGC 9 cut(s) 163, 442, 886, 928, 940, 949, 958, 1192, 1341
HpyF3I CTNAG 4 cut(s) 147, 153, 846, 1377
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 8 cut(s) 58, 855, 931, 1000, 1066, 1186, 1414, 1456
HspAI GCGC 3 cut(s) 164, 476, 1100
KasI GGCGCC 1 cut(s) 163
KflI GGGWCCC 2 cut(s) 1133, 1171
KspI CCGCGG 1 cut(s) 556
Kzo9I GATC 3 cut(s) 800, 1369, 1387
LmnI GCTCC 2 cut(s) 514, 979
LweI GCATC 4 cut(s) 487, 541, 952, 1353
MaeI CTAG 3 cut(s) 651, 1296, 1355
MaeIII GTNAC 1 cut(s) 867
MalI GATC 3 cut(s) 802, 1371, 1389
MbiI CCGCTC 1 cut(s) 509
MboI GATC 3 cut(s) 800, 1369, 1387
MboII GAAGA 8 cut(s) 378, 381, 513, 744, 938, 1227, 1412, 1462
MflI RGATCY 2 cut(s) 800, 1387
MhlI GDGCHC 3 cut(s) 774, 1220, 1282
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 5 cut(s) 20, 586, 760, 1326, 1404
MluNI TGGCCA 1 cut(s) 1149
Mly113I GGCGCC 1 cut(s) 164
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 2 cut(s) 212, 1365
Mox20I TGGCCA 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 1404
MscI TGGCCA 1 cut(s) 1149
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 1149
MspA1I CMGCKG 2 cut(s) 486, 555
MspI CCGG 2 cut(s) 161, 680
MspR9I CCNGG 3 cut(s) 349, 602, 828
Mva1269I GAATGC 1 cut(s) 8
MvaI CCWGG 3 cut(s) 349, 602, 828
MvnI CGCG 3 cut(s) 476, 555, 1265
MwoI GCNNNNNNNGC 9 cut(s) 163, 442, 886, 928, 940, 949, 958, 1192, 1341
NarI GGCGCC 1 cut(s) 164
NcoI CCATGG 2 cut(s) 851, 1452
NdeII GATC 3 cut(s) 800, 1369, 1387
NlaIII CATG 8 cut(s) 58, 855, 931, 1000, 1066, 1186, 1414, 1456
NlaIV GGNNCC 9 cut(s) 165, 1134, 1135, 1172, 1173, 1218, 1279, 1280, 1389
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 867
NsbI TGCGCA 1 cut(s) 1101
PctI GAATGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 1404
PfeI GAWTC 4 cut(s) 113, 575, 676, 1313
PleI GAGTC 1 cut(s) 744
PluTI GGCGCC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 744
PpuMI RGGWCCY 2 cut(s) 1133, 1171
Psp5II RGGWCCY 2 cut(s) 1133, 1171
Psp6I CCWGG 3 cut(s) 347, 600, 826
PspFI CCCAGC 3 cut(s) 135, 432, 978
PspGI CCWGG 3 cut(s) 347, 600, 826
PspN4I GGNNCC 9 cut(s) 165, 1134, 1135, 1172, 1173, 1218, 1279, 1280, 1389
PspOMI GGGCCC 2 cut(s) 1216, 1278
PspPPI RGGWCCY 2 cut(s) 1133, 1171
PstNI CAGNNNCTG 2 cut(s) 1307, 1427
PsuI RGATCY 2 cut(s) 800, 1387
RseI CAYNNNNRTG 1 cut(s) 540
SacII CCGCGG 1 cut(s) 556
Sau3AI GATC 3 cut(s) 800, 1369, 1387
SchI GAGTC 1 cut(s) 745
ScrFI CCNGG 3 cut(s) 349, 602, 828
SduI GDGCHC 3 cut(s) 774, 1220, 1282
SfaNI GCATC 4 cut(s) 487, 541, 952, 1353
SfcI CTRYAG 1 cut(s) 969
SfoI GGCGCC 1 cut(s) 165
Sfr303I CCGCGG 1 cut(s) 556
SgrAI CRCCGGYG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 556
SinI GGWCC 4 cut(s) 58, 1133, 1171, 1267
SmiMI CAYNNNNRTG 1 cut(s) 540
Sse9I AATT 5 cut(s) 20, 586, 760, 1326, 1404
SspDI GGCGCC 1 cut(s) 163
SspMI CTAG 3 cut(s) 651, 1296, 1355
StyD4I CCNGG 3 cut(s) 347, 600, 826
StyI CCWWGG 3 cut(s) 766, 851, 1452
TaaI ACNGT 1 cut(s) 612
TasI AATT 5 cut(s) 20, 586, 760, 1326, 1404
TauI GCSGC 8 cut(s) 421, 456, 489, 555, 558, 667, 724, 883
TfiI GAWTC 4 cut(s) 113, 575, 676, 1313
TscAI CASTG 2 cut(s) 801, 1035
TseFI GTSAC 1 cut(s) 867
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 6 cut(s) 780, 798, 888, 929, 1326, 1462
TspGWI ACGGA 2 cut(s) 501, 1337
TspRI CASTG 2 cut(s) 801, 1035
VpaK11BI GGWCC 4 cut(s) 58, 1133, 1171, 1267
XagI CCTNNNNNAGG 1 cut(s) 715
XapI RAATTY 4 cut(s) 20, 760, 1326, 1404
XmnI GAANNNNTTC 1 cut(s) 1404
XspI CTAG 3 cut(s) 651, 1296, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.