Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

10451144 .. 10452230

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGAAGGATAGGAGGATTGGTGTGGCCATGGACTTCTCAAAGAGCAGCAAAAACGCTCTCCAATGGGCCGTAGACAACTTGGTCGACAAAGGTGACACCCTCTGCATCATCCACATCAACAGCAACAAACTCGACGAGTCTCGCAACGTCCTCTGGGCCAAATCTGGTTCTCCTCTTATTCCATTGTCCGAGTTTAGAGAGCCTGAGGTTATGAAAAAGTATGGGGTACAAACTGATATGGAAGTGCTTGATACACTCGACACTGCTTCTAGGCAGAAAGAGGTGAGCATTATTACAAAGCTGTACTGGGGAGATGCAAGGGAGAAGCTTCTTCAAGCAGTTGAGGATCTCAAATTAGACTCTTTGGTGATGGGAAGCAGAGGACTTGGTACCCTTAAAAGGGTTATACTTGGAAGTGTGAGCGACTATGTGATGACGAATGCTTCAATCCCTGTGACCATTGTCAAGGACCAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

160

Amino Acids

17.84

Weight (kDa)

6.59

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	5 - 157	6.8e-30	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	2 cut(s)	75, 87
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	27
AfaI	GTAC	3 cut(s)	231, 308, 394
AfiI	CCNNNNNNNGG	2 cut(s)	402, 403
AgsI	TTSAA	2 cut(s)	338, 450
AluBI	AGCT	2 cut(s)	304, 331
AluI	AGCT	2 cut(s)	304, 331
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	3 cut(s)	27, 69, 159
ApeKI	GCWGC	1 cut(s)	48
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	69, 159, 472
AsuHPI	GGTGA	4 cut(s)	16, 107, 298, 382
AvaII	GGWCC	1 cut(s)	472
AxyI	CCTNAGG	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	56
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	3 cut(s)	69, 159, 472
BmiI	GGNNCC	1 cut(s)	394
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	117, 307
BmuI	ACTGGG	1 cut(s)	319
BoxI	GACNNNNGTC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 403
Bse1I	ACTGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	402, 403
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	3 cut(s)	29, 71, 161
BshNI	GGYRCC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	402, 403
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	29, 71, 161
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	30
BspANI	GGCC	3 cut(s)	29, 71, 161
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	207, 480
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	29, 71, 161
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	69, 159, 472
Csp6I	GTAC	3 cut(s)	230, 307, 393
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	29, 71, 161, 205, 304, 331
CviKI_1	RGCY	6 cut(s)	29, 71, 161, 205, 304, 331
CviQI	GTAC	3 cut(s)	230, 307, 393
DdeI	CTNAG	2 cut(s)	207, 480
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	472
Eco81I	CCTNAGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	34
FaiI	YATR	6 cut(s)	32, 215, 225, 242, 410, 432
FatI	CATG	1 cut(s)	30
FblI	GTMKAC	2 cut(s)	75, 87
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	29, 71, 161
Hin1II	CATG	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	140, 362
HphI	GGTGA	4 cut(s)	16, 107, 298, 382
Hpy166II	GTNNAC	2 cut(s)	76, 88
Hpy188I	TCNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	76, 88
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	108, 320
HpyF3I	CTNAG	2 cut(s)	207, 480
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	34
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	5 cut(s)	142, 153, 219, 295, 468
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	117, 307
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	95, 457
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	1 cut(s)	356
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	149, 356
MnlI	CCTC	8 cut(s)	9, 113, 164, 186, 202, 277, 340, 377
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	448
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	95, 457
PctI	GAATGC	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	2 cut(s)	148, 356
PpsI	GAGTC	2 cut(s)	148, 356
PshAI	GACNNNNGTC	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	3 cut(s)	69, 159, 472
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	3 cut(s)	231, 308, 394
RsaNI	GTAC	3 cut(s)	230, 307, 393
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	3 cut(s)	69, 159, 472
SchI	GAGTC	2 cut(s)	149, 356
SetI	ASST	6 cut(s)	97, 153, 213, 288, 306, 333
SfaNI	GCATC	2 cut(s)	117, 307
SinI	GGWCC	1 cut(s)	472
Sse9I	AATT	1 cut(s)	356
SspMI	CTAG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	30
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	87, 135, 261
TasI	AATT	1 cut(s)	356
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	95, 457
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	2 cut(s)	95, 457
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	75, 87
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.