Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Reverse (-)

17017929 .. 17023369

Gene Structure 5441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG180900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGACCCACAGAACTCCACCGCCACCGGCACTCCTCCAATCCCCTCCTCCTCTGAAACACCACAACTCCCACCCCCCCAGCCCCAATCGCAACCTCAGCCGCCGTCCTCCTCCGCCTCAGCCCCTTCAACCTCCGCCCCAATCCCTCCGTCTCCGTCTCCGTCTCCAAACCCTAACCCTAAACCCTCAACCGCATCATTACCACCGCAGTCCCTCCCAGCCCCTGCTCATACTCGACCTCCCCCCACATTGAATCGCCCATGGCCGCAGCCGCCTCACTACTCCCACCACTACCCCTCCCCTTCTTCTTCCGCTTCCTCTGTGCCTCCGGCGCCGTCGGTCTCCGGGCCTCCTCCGAGGGCCGGCATTGCCATTGGTGTCCCGGCGCACCACCCTGGCCCCTCTCCCCCTCAGCCCACTCCGTATACCTCATCTTACGGCCATTTCGGCGGCATCGGCCGCGGCGGCGGTGTTGGTGTGCCTGAACCCTCATCCAATTCCAATGCTTCTCAGGTGAGACCGCCAATGCCAGGAATGCAGGGAATGGGGATGATGGGCTCGCTTGGTTCGACTTCTCAAATGCGCCCGGCTGGGATTTCTCCACACCATCCACAGAGACCTGTTCAATCCCCTCTTAGGCCACCATCTACTGCAAGTAATCAGTCCCCTACTTCCCAAAATTTCCAAGGGCATAACCTTTCAAGAGCCTCATCATTGGGATCTCCTAGTTCACCAAATACATCTCAAGTTTTACCGCTTCATAATCAGCCATGGTTATCTGGATCACAAGGGAAGCCTCCTATACCCTCCTCTCCGTATAGGCAGCAGATGACCTCGACATCGATGCTGCAAAGATCACATCTTCCGCAGCCGCAGCAGCAACAGCAACAACACCATCCCCTTCCTACGGCTACACAGCAACAGCAGCAAGGACCCATGCCTACAGCTTCACCACAACAGCATATGCCATCTGTGCAGCATCAACAACCTTCCTCCTCACATCAAGGACATGATCATTTTGGGCAACAAACTCAACCATCAAGGATCCCACAAGCTTCACCGCGTCAGCAACAAAATTCAAGGGTCCAGGTCCCAGTAAACCAGAAGTCTTCCCCACTTGCAGCAGCACAGCCTAACACAGTCCAATCAGCACCGCAAAATAGAATCACTAGTGCAGAAACTGAGGAACCTTGTAACAGAATTCTTAGCAAAAGAACCATTCATGATCTAGTCAACCAGATTGATCCATCTGAGAGATTGGATCCAGATGTTGAAGACATTCTCATGGACATTGCAGATGAATTTGTAGAATCTATTACAACATTTAGTTGCTCACTAGCCAAGCATCGGAAATCAACTACATTGGAAGCAAAAGACATACTCCTACATCTTGAAAAAAATTGGAATATAACTCTTCCTGGTTTTGGTGGTGATGAAATTAAGGGCTACAGAAAACCGATTACAAATGATATTCACAAGGGGCGTCTTGCTGCTATAAAGAAGTCCATGGTAGCTACTGAGACAGCAAATACGAGGAGTACTGCAGGGCAAGCTACTGGAAATGCAAAGGGTGGTGTAAAGGCGCCTGCTAATATAAGCTCCCAAAATATCAAAATGCGTGAAGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

543

Amino Acids

57.63

Weight (kDa)

9.92

Isoelectric Point (pI)

82.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_20kDa	PF03847	403 - 470	4.8e-32	Transcription initiation factor TFIID subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	331, 1582
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	2 cut(s)	462, 1063
AclWI	GGATC	7 cut(s)	727, 790, 1039, 1052, 1238, 1256, 1269
AcoI	YGGCCR	3 cut(s)	263, 439, 457
AcsI	RAATTY	4 cut(s)	679, 1075, 1200, 1301
AcyI	GRCGYC	3 cut(s)	332, 1483, 1583
AfaI	GTAC	1 cut(s)	1540
AfiI	CCNNNNNNNGG	6 cut(s)	362, 530, 636, 907, 1347, 1424
AgsI	TTSAA	7 cut(s)	129, 253, 626, 702, 1080, 1274, 1394
AhlI	ACTAGT	1 cut(s)	1169
AjnI	CCWGG	4 cut(s)	394, 529, 1086, 1417
AluBI	AGCT	5 cut(s)	947, 1055, 1514, 1553, 1599
AluI	AGCT	5 cut(s)	947, 1055, 1514, 1553, 1599
Alw26I	GTCTC	7 cut(s)	156, 162, 168, 346, 511, 610, 1514
AlwI	GGATC	7 cut(s)	727, 790, 1039, 1052, 1238, 1256, 1269
AlwNI	CAGNNNCTG	2 cut(s)	224, 1181
AoxI	GGCC	7 cut(s)	263, 347, 360, 397, 439, 457, 638
ApoI	RAATTY	4 cut(s)	679, 1075, 1200, 1301
Asp700I	GAANNNNTTC	1 cut(s)	1278
AspLEI	GCGC	4 cut(s)	334, 388, 585, 1585
AspS9I	GGNCC	7 cut(s)	4, 347, 360, 398, 932, 1084, 1090
AsuC2I	CCSGG	3 cut(s)	346, 383, 587
AsuHPI	GGTGA	5 cut(s)	526, 723, 942, 1050, 1442
AvaII	GGWCC	4 cut(s)	4, 932, 1084, 1090
BamHI	GGATCC	2 cut(s)	1044, 1261
BanI	GGYRCC	2 cut(s)	331, 1582
BanII	GRGCYC	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	1101, 1281
BbvCI	CCTCAGC	3 cut(s)	96, 118, 411
BccI	CCATC	7 cut(s)	547, 615, 652, 903, 976, 1045, 1255
BceAI	ACGGC	4 cut(s)	88, 319, 454, 924
BcgI	CGANNNNNNTGC	2 cut(s)	826, 860
BciT130I	CCWGG	4 cut(s)	396, 531, 1088, 1419
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	3 cut(s)	346, 383, 587
BcoDI	GTCTC	7 cut(s)	156, 162, 168, 346, 511, 610, 1514
BcuI	ACTAGT	1 cut(s)	1169
BfaI	CTAG	4 cut(s)	726, 1170, 1229, 1337
BfmI	CTRYAG	3 cut(s)	942, 1447, 1542
BfoI	RGCGCY	2 cut(s)	335, 1586
BglI	GCCNNNNNGGC	2 cut(s)	447, 465
BmcAI	AGTACT	1 cut(s)	1540
Bme1390I	CCNGG	7 cut(s)	346, 383, 396, 531, 587, 1088, 1419
Bme18I	GGWCC	4 cut(s)	4, 932, 1084, 1090
BmgT120I	GGNCC	7 cut(s)	4, 347, 360, 398, 932, 1084, 1090
BmrFI	CCNGG	7 cut(s)	346, 383, 396, 531, 587, 1088, 1419
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	5 cut(s)	203, 462, 834, 988, 1354
BmuI	ACTGGG	1 cut(s)	1088
BpiI	GAAGAC	2 cut(s)	1101, 1281
Bpu10I	CCTNAGC	3 cut(s)	96, 118, 411
BpuEI	CTTGAG	1 cut(s)	729
BpuMI	CCSGG	3 cut(s)	346, 383, 587
Bsa29I	ATCGAT	1 cut(s)	842
BsaHI	GRCGYC	3 cut(s)	332, 1483, 1583
BsaI	GGTCTC	3 cut(s)	346, 511, 610
BsaJI	CCNNGG	7 cut(s)	260, 356, 394, 460, 685, 770, 1506
BsaXI	ACNNNNNCTCC	8 cut(s)	16, 46, 51, 81, 223, 253, 281, 311
Bsc4I	CCNNNNNNNGG	6 cut(s)	362, 530, 636, 907, 1347, 1424
Bse118I	RCCGGY	2 cut(s)	26, 362
Bse1I	ACTGG	2 cut(s)	1094, 1561
Bse3DI	GCAATG	2 cut(s)	366, 1290
BseBI	CCWGG	4 cut(s)	396, 531, 1088, 1419
BseCI	ATCGAT	1 cut(s)	842
BseDI	CCNNGG	7 cut(s)	260, 356, 394, 460, 685, 770, 1506
BseGI	GGATG	4 cut(s)	491, 555, 607, 895
BseLI	CCNNNNNNNGG	6 cut(s)	362, 530, 636, 907, 1347, 1424
BseMI	GCAATG	2 cut(s)	366, 1290
BseMII	CTCAG	7 cut(s)	110, 132, 425, 524, 1173, 1242, 1509
BseNI	ACTGG	2 cut(s)	1094, 1561
BseRI	GAGGAG	8 cut(s)	24, 37, 40, 100, 342, 799, 985, 1549
BseX3I	CGGCCG	1 cut(s)	457
BseYI	CCCAGC	3 cut(s)	78, 217, 590
BsgI	GTGCAG	2 cut(s)	995, 1194
Bsh1236I	CGCG	2 cut(s)	462, 1063
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	7 cut(s)	265, 349, 362, 399, 441, 459, 640
BshNI	GGYRCC	2 cut(s)	331, 1582
BshVI	ATCGAT	1 cut(s)	842
BsiEI	CGRYCG	1 cut(s)	460
BsiSI	CCGG	6 cut(s)	27, 329, 345, 363, 383, 587
BslFI	GGGAC	4 cut(s)	196, 365, 649, 1076
BslI	CCNNNNNNNGG	6 cut(s)	362, 530, 636, 907, 1347, 1424
BsmAI	GTCTC	7 cut(s)	156, 162, 168, 346, 511, 610, 1514
BsmBI	CGTCTC	3 cut(s)	156, 162, 168
BsmFI	GGGAC	4 cut(s)	196, 365, 649, 1076
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	7 cut(s)	265, 349, 362, 399, 441, 459, 640
Bso31I	GGTCTC	3 cut(s)	346, 511, 610
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
Bsp19I	CCATGG	3 cut(s)	260, 770, 1506
BspANI	GGCC	7 cut(s)	265, 349, 362, 399, 441, 459, 640
BspCNI	CTCAG	7 cut(s)	109, 131, 424, 523, 1174, 1243, 1510
BspDI	ATCGAT	1 cut(s)	842
BspFNI	CGCG	2 cut(s)	462, 1063
BspHI	TCATGA	1 cut(s)	1222
BspMAI	CTGCAG	1 cut(s)	1546
BspPI	GGATC	7 cut(s)	727, 790, 1039, 1052, 1238, 1256, 1269
BspT107I	GGYRCC	2 cut(s)	331, 1582
BspTNI	GGTCTC	3 cut(s)	346, 511, 610
BsrDI	GCAATG	2 cut(s)	366, 1290
BsrFI	RCCGGY	2 cut(s)	26, 362
BsrI	ACTGG	2 cut(s)	1094, 1561
BssAI	RCCGGY	2 cut(s)	26, 362
BssECI	CCNNGG	7 cut(s)	260, 356, 394, 460, 685, 770, 1506
BssMI	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	3 cut(s)	332, 1483, 1583
BssT1I	CCWWGG	4 cut(s)	260, 685, 770, 1506
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	4 cut(s)	396, 531, 1088, 1419
Bst4CI	ACNGT	1 cut(s)	1141
Bst6I	CTCTTC	1 cut(s)	1419
BstACI	GRCGYC	3 cut(s)	332, 1483, 1583
BstC8I	GCNNGC	4 cut(s)	364, 560, 1551, 1587
BstDEI	CTNAG	9 cut(s)	96, 118, 411, 510, 635, 1182, 1205, 1251, 1518
BstDSI	CCRYGG	4 cut(s)	260, 460, 770, 1506
BstF5I	GGATG	4 cut(s)	491, 555, 607, 895
BstFNI	CGCG	2 cut(s)	462, 1063
BstH2I	RGCGCY	2 cut(s)	335, 1586
BstHHI	GCGC	4 cut(s)	334, 388, 585, 1585
BstKTI	GATC	8 cut(s)	722, 785, 857, 1015, 1047, 1228, 1246, 1264
BstMAI	GTCTC	7 cut(s)	156, 162, 168, 346, 511, 610, 1514
BstMBI	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
BstMCI	CGRYCG	1 cut(s)	460
BstNI	CCWGG	4 cut(s)	396, 531, 1088, 1419
BstSCI	CCNGG	7 cut(s)	344, 381, 394, 529, 585, 1086, 1417
BstSFI	CTRYAG	3 cut(s)	942, 1447, 1542
BstUI	CGCG	2 cut(s)	462, 1063
BstV2I	GAAGAC	2 cut(s)	1101, 1281
BstX2I	RGATCY	3 cut(s)	719, 1044, 1261
BstYI	RGATCY	3 cut(s)	719, 1044, 1261
BstZ17I	GTATAC	1 cut(s)	426
BstZI	CGGCCG	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	842
BsuRI	GGCC	7 cut(s)	265, 349, 362, 399, 441, 459, 640
BsuTUI	ATCGAT	1 cut(s)	842
BtgI	CCRYGG	4 cut(s)	260, 460, 770, 1506
BtsCI	GGATG	4 cut(s)	491, 555, 607, 895
Cac8I	GCNNGC	4 cut(s)	364, 560, 1551, 1587
CaiI	CAGNNNCTG	2 cut(s)	224, 1181
CciI	TCATGA	1 cut(s)	1222
CfoI	GCGC	4 cut(s)	334, 388, 585, 1585
Cfr10I	RCCGGY	2 cut(s)	26, 362
Cfr13I	GGNCC	7 cut(s)	4, 347, 360, 398, 932, 1084, 1090
Cfr42I	CCGCGG	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	842
CseI	GACGC	2 cut(s)	1052, 1472
Csp6I	GTAC	1 cut(s)	1539
CviAII	CATG	7 cut(s)	261, 771, 937, 1010, 1223, 1285, 1507
CviQI	GTAC	1 cut(s)	1539
DdeI	CTNAG	9 cut(s)	96, 118, 411, 510, 635, 1182, 1205, 1251, 1518
DinI	GGCGCC	2 cut(s)	333, 1584
DpnI	GATC	8 cut(s)	721, 784, 856, 1014, 1046, 1227, 1245, 1263
DpnII	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
EaeI	YGGCCR	3 cut(s)	263, 439, 457
EagI	CGGCCG	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	1419
EarI	CTCTTC	1 cut(s)	1419
EciI	GGCGGA	2 cut(s)	103, 124
EclXI	CGGCCG	1 cut(s)	457
Eco130I	CCWWGG	4 cut(s)	260, 685, 770, 1506
Eco24I	GRGCYC	1 cut(s)	560
Eco31I	GGTCTC	3 cut(s)	346, 511, 610
Eco47I	GGWCC	4 cut(s)	4, 932, 1084, 1090
Eco52I	CGGCCG	1 cut(s)	457
EcoO109I	RGGNCCY	2 cut(s)	932, 1090
EcoRI	GAATTC	1 cut(s)	1200
EcoRII	CCWGG	4 cut(s)	394, 529, 1086, 1417
EcoT14I	CCWWGG	4 cut(s)	260, 685, 770, 1506
EcoT38I	GRGCYC	1 cut(s)	560
EgeI	GGCGCC	2 cut(s)	333, 1584
EheI	GGCGCC	2 cut(s)	333, 1584
ErhI	CCWWGG	4 cut(s)	260, 685, 770, 1506
Esp3I	CGTCTC	3 cut(s)	156, 162, 168
FaeI	CATG	7 cut(s)	264, 774, 940, 1013, 1226, 1288, 1510
FaqI	GGGAC	4 cut(s)	196, 365, 649, 1076
FatI	CATG	7 cut(s)	260, 770, 936, 1009, 1222, 1284, 1506
FauNDI	CATATG	1 cut(s)	963
FbaI	TGATCA	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	425
FokI	GGATG	4 cut(s)	478, 562, 594, 882
FriOI	GRGCYC	1 cut(s)	560
FspBI	CTAG	4 cut(s)	726, 1170, 1229, 1337
GlaI	GCGC	4 cut(s)	333, 387, 584, 1584
GsaI	CCCAGC	3 cut(s)	82, 221, 594
HaeII	RGCGCY	2 cut(s)	335, 1586
HaeIII	GGCC	7 cut(s)	265, 349, 362, 399, 441, 459, 640
HapII	CCGG	6 cut(s)	27, 329, 345, 363, 383, 587
HgaI	GACGC	2 cut(s)	1052, 1472
HhaI	GCGC	4 cut(s)	334, 388, 585, 1585
Hin1I	GRCGYC	3 cut(s)	332, 1483, 1583
Hin1II	CATG	7 cut(s)	264, 774, 940, 1013, 1226, 1288, 1510
Hin6I	GCGC	4 cut(s)	332, 386, 583, 1583
HinP1I	GCGC	4 cut(s)	332, 386, 583, 1583
HincII	GTYRAC	1 cut(s)	1234
HindII	GTYRAC	1 cut(s)	1234
HindIII	AAGCTT	1 cut(s)	1053
HinfI	GANTC	3 cut(s)	253, 1164, 1310
HpaII	CCGG	6 cut(s)	27, 329, 345, 363, 383, 587
HphI	GGTGA	5 cut(s)	526, 723, 942, 1050, 1442
Hpy166II	GTNNAC	4 cut(s)	426, 731, 1099, 1234
Hpy188I	TCNGA	4 cut(s)	55, 357, 1252, 1350
Hpy188III	TCNNGA	5 cut(s)	702, 780, 1223, 1265, 1391
Hpy8I	GTNNAC	4 cut(s)	426, 731, 1099, 1234
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	4 cut(s)	135, 312, 911, 999
HpyCH4III	ACNGT	1 cut(s)	1141
HpyCH4V	TGCA	9 cut(s)	538, 653, 850, 976, 1121, 1175, 1295, 1544, 1565
HpyF3I	CTNAG	9 cut(s)	96, 118, 411, 510, 635, 1182, 1205, 1251, 1518
Hsp92I	GRCGYC	3 cut(s)	332, 1483, 1583
Hsp92II	CATG	7 cut(s)	264, 774, 940, 1013, 1226, 1288, 1510
HspAI	GCGC	4 cut(s)	332, 386, 583, 1583
KasI	GGCGCC	2 cut(s)	331, 1582
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	1012
KspI	CCGCGG	1 cut(s)	463
Kzo9I	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
LmnI	GCTCC	1 cut(s)	1604
LweI	GCATC	5 cut(s)	203, 462, 834, 988, 1354
MaeI	CTAG	4 cut(s)	726, 1170, 1229, 1337
MaeIII	GTNAC	2 cut(s)	1193, 1624
MalI	GATC	8 cut(s)	721, 784, 856, 1014, 1046, 1227, 1245, 1263
MboI	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
MboII	GAAGA	6 cut(s)	297, 300, 854, 1101, 1286, 1406
MflI	RGATCY	3 cut(s)	719, 1044, 1261
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	7 cut(s)	496, 679, 1075, 1200, 1301, 1399, 1437
Mly113I	GGCGCC	2 cut(s)	332, 1583
MroNI	GCCGGC	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	1278
MseI	TTAA	1 cut(s)	1440
MslI	CAYNNNNRTG	1 cut(s)	1283
MspA1I	CMGCKG	1 cut(s)	462
MspI	CCGG	6 cut(s)	27, 329, 345, 363, 383, 587
MspR9I	CCNGG	7 cut(s)	346, 383, 396, 531, 587, 1088, 1419
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	4 cut(s)	396, 531, 1088, 1419
MvnI	CGCG	2 cut(s)	462, 1063
NaeI	GCCGGC	1 cut(s)	364
NarI	GGCGCC	2 cut(s)	332, 1583
NciI	CCSGG	3 cut(s)	346, 383, 587
NcoI	CCATGG	3 cut(s)	260, 770, 1506
NdeI	CATATG	1 cut(s)	963
NdeII	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
NgoMIV	GCCGGC	1 cut(s)	362
NlaIII	CATG	7 cut(s)	264, 774, 940, 1013, 1226, 1288, 1510
PagI	TCATGA	1 cut(s)	1222
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PctI	GAATGC	1 cut(s)	540
PdiI	GCCGGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	1278
PfeI	GAWTC	3 cut(s)	253, 1164, 1310
PluTI	GGCGCC	2 cut(s)	335, 1586
PpuMI	RGGWCCY	2 cut(s)	932, 1090
Psp5II	RGGWCCY	2 cut(s)	932, 1090
Psp6I	CCWGG	4 cut(s)	394, 529, 1086, 1417
PspFI	CCCAGC	3 cut(s)	78, 217, 590
PspGI	CCWGG	4 cut(s)	394, 529, 1086, 1417
PspPI	GGNCC	7 cut(s)	4, 347, 360, 398, 932, 1084, 1090
PspPPI	RGGWCCY	2 cut(s)	932, 1090
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	2 cut(s)	224, 1181
PsuI	RGATCY	3 cut(s)	719, 1044, 1261
RsaI	GTAC	1 cut(s)	1540
RsaNI	GTAC	1 cut(s)	1539
RseI	CAYNNNNRTG	1 cut(s)	1283
SacII	CCGCGG	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	1440
Sau3AI	GATC	8 cut(s)	719, 782, 854, 1012, 1044, 1225, 1243, 1261
Sau96I	GGNCC	7 cut(s)	4, 347, 360, 398, 932, 1084, 1090
ScaI	AGTACT	1 cut(s)	1540
ScrFI	CCNGG	7 cut(s)	346, 383, 396, 531, 587, 1088, 1419
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	5 cut(s)	203, 462, 834, 988, 1354
SfcI	CTRYAG	3 cut(s)	942, 1447, 1542
SfoI	GGCGCC	2 cut(s)	333, 1584
Sfr303I	CCGCGG	1 cut(s)	463
SgrBI	CCGCGG	1 cut(s)	463
SinI	GGWCC	4 cut(s)	4, 932, 1084, 1090
SmiMI	CAYNNNNRTG	1 cut(s)	1283
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
SpeI	ACTAGT	1 cut(s)	1169
Sse9I	AATT	7 cut(s)	496, 679, 1075, 1200, 1301, 1399, 1437
SspDI	GGCGCC	2 cut(s)	331, 1582
SspMI	CTAG	4 cut(s)	726, 1170, 1229, 1337
StyD4I	CCNGG	7 cut(s)	344, 381, 394, 529, 585, 1086, 1417
StyI	CCWWGG	4 cut(s)	260, 685, 770, 1506
TaaI	ACNGT	1 cut(s)	1141
TaqI	TCGA	4 cut(s)	235, 569, 836, 842
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	7 cut(s)	496, 679, 1075, 1200, 1301, 1399, 1437
TatI	WGTACW	1 cut(s)	1538
TauI	GCSGC	8 cut(s)	103, 268, 274, 453, 462, 465, 468, 874
TfiI	GAWTC	3 cut(s)	253, 1164, 1310
Tru1I	TTAA	1 cut(s)	1440
Tru9I	TTAA	1 cut(s)	1440
TspDTI	ATGAA	4 cut(s)	749, 1211, 1314, 1449
TspGWI	ACGGA	5 cut(s)	138, 144, 150, 411, 804
VpaK11BI	GGWCC	4 cut(s)	4, 932, 1084, 1090
XapI	RAATTY	4 cut(s)	679, 1075, 1200, 1301
XmiI	GTMKAC	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	1278
XspI	CTAG	4 cut(s)	726, 1170, 1229, 1337
ZrmI	AGTACT	1 cut(s)	1540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.