Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020146.1

Orthogroup ID

OG0005887

Physical Location & Seq

Genomic Coordinates Forward (+)

12836 .. 13802

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020146.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggacccacagaaccccaccgccaccggcactcctccaatcccctcctcctctgaagcaccacaactcccaaccccccagccccaatcgcaacctcagccgccgtcctcctccgcctcagccccttcaacctccgccccaatccctccgtctccgtctccttctccaaaccctaaccctaaaccctcaaccgcatcattaccaccgcagtccctcccagcccctgctcatactcgacctccccccacattgaatcgcccatggccgcagccgcctcactactcccaccactacccctccccttcttcttccgcttcctctgtgcctccggcgccgtcggtctccggacctcctccgaggggcggcattgccattggtgtcccggcgcaccaccctggcccctctccccctcagcccactccgtatacctcatcttacggccatttcggcggcatcggccgcggcggcggtgttggtgtgcctgaaccctcatccaattccaatgcttctcaggtgagaccggtgagaccgccgatgccaggaatgcagggaatggggatgatgggctcgcttggttcgacttctcaaatgcgcccagctgggatttctccacaccatccacagagacctgttcaatccccccttaggccaccatctaccgcaagtaatcagtcccctacttcccaagtcagtatccagttgccaatcactattttttactgcaattttcaatttgtacttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000428 GO:0001085 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0051276 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070461 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIID_20kDa

Protein Analysis

248

Amino Acids

25.44

Weight (kDa)

10.56

Isoelectric Point (pI)

95.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10070
fragaria_vesca	FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380 FvH4_6g18380
malus_domestica	MD12G1023000.v1.1 MD14G1020000.v1.1
prunus_persica	Prupe.7G113600_v2.0.a1
pyrus_communis	pycom12g02150 pycom14g01960
rosa_chinensis	RchiOBHm_Chr3g0472861
rosa_laevigata	RLG00000024050
rosa_multiflora	Rmu_sc0020146.1_g000004
rosa_roxburghii	Rroxscaffold_6G00408550
rosa_rugosa	Rorug03G0128200 Rorug03G0128300 Rorug03G0128400 Rorug03G0128500 Rorug03G0128600 Rorug03G0128700 Rorug03G0128800
rosa_samantha	Rh3AG180900 Rh3BG207100 Rh3CG204300 Rh3DG168800
rosa_wichuraiana	Rw3G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	344
AcoI	YGGCCR	3 cut(s)	263, 439, 457
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	1 cut(s)	738
AfiI	CCNNNNNNNGG	4 cut(s)	359, 362, 539, 645
AgeI	ACCGGT	1 cut(s)	520
AgsI	TTSAA	4 cut(s)	129, 253, 635, 731
AjnI	CCWGG	2 cut(s)	394, 538
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw26I	GTCTC	6 cut(s)	156, 162, 346, 511, 520, 619
AlwNI	CAGNNNCTG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	5 cut(s)	263, 397, 439, 457, 647
ApeKI	GCWGC	1 cut(s)	268
AsiGI	ACCGGT	1 cut(s)	520
AspLEI	GCGC	3 cut(s)	334, 388, 594
AspS9I	GGNCC	3 cut(s)	4, 347, 398
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	526, 535
AvaII	GGWCC	2 cut(s)	4, 347
AxyI	CCTNAGG	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	569
BbvCI	CCTCAGC	3 cut(s)	96, 118, 411
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	3 cut(s)	556, 624, 661
BceAI	ACGGC	3 cut(s)	88, 319, 454
BciT130I	CCWGG	2 cut(s)	396, 540
BciVI	GTATCC	1 cut(s)	704
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	6 cut(s)	156, 162, 346, 511, 520, 619
BfoI	RGCGCY	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	704
BglI	GCCNNNNNGGC	2 cut(s)	447, 465
BisI	GCNGC	9 cut(s)	101, 266, 269, 272, 364, 451, 460, 463, 466
BlsI	GCNGC	9 cut(s)	102, 267, 270, 273, 365, 452, 461, 464, 467
Bme1390I	CCNGG	3 cut(s)	383, 396, 540
Bme18I	GGWCC	2 cut(s)	4, 347
BmgT120I	GGNCC	3 cut(s)	4, 347, 398
BmiI	GGNNCC	3 cut(s)	6, 333, 400
BmrFI	CCNGG	3 cut(s)	383, 396, 540
BmsI	GCATC	3 cut(s)	203, 462, 525
Bpu10I	CCTNAGC	3 cut(s)	96, 118, 411
BpuMI	CCSGG	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	4 cut(s)	346, 511, 520, 619
BsaJI	CCNNGG	4 cut(s)	260, 356, 394, 460
BsaWI	WCCGGW	2 cut(s)	344, 520
BsaXI	ACNNNNNCTCC	8 cut(s)	16, 46, 51, 81, 223, 253, 281, 311
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 362, 539, 645
Bse118I	RCCGGY	2 cut(s)	26, 520
Bse1I	ACTGG	1 cut(s)	697
Bse21I	CCTNAGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	396, 540
BseDI	CCNNGG	4 cut(s)	260, 356, 394, 460
BseGI	GGATG	3 cut(s)	491, 564, 616
BseLI	CCNNNNNNNGG	4 cut(s)	359, 362, 539, 645
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	110, 132, 425, 524
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	5 cut(s)	24, 37, 40, 100, 342
BseX3I	CGGCCG	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	4 cut(s)	78, 217, 595, 599
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	5 cut(s)	265, 399, 441, 459, 649
BshNI	GGYRCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	520
BsiEI	CGRYCG	1 cut(s)	460
BsiSI	CCGG	5 cut(s)	27, 329, 345, 383, 521
BslFI	GGGAC	3 cut(s)	196, 365, 658
BslI	CCNNNNNNNGG	4 cut(s)	359, 362, 539, 645
BsmAI	GTCTC	6 cut(s)	156, 162, 346, 511, 520, 619
BsmBI	CGTCTC	2 cut(s)	156, 162
BsmFI	GGGAC	3 cut(s)	196, 365, 658
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	5 cut(s)	265, 399, 441, 459, 649
Bso31I	GGTCTC	4 cut(s)	346, 511, 520, 619
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	344
Bsp19I	CCATGG	1 cut(s)	260
BspANI	GGCC	5 cut(s)	265, 399, 441, 459, 649
BspCNI	CTCAG	4 cut(s)	109, 131, 424, 523
BspEI	TCCGGA	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	6, 333, 400
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	4 cut(s)	346, 511, 520, 619
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	2 cut(s)	26, 520
BsrI	ACTGG	1 cut(s)	697
BssAI	RCCGGY	2 cut(s)	26, 520
BssECI	CCNNGG	4 cut(s)	260, 356, 394, 460
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	396, 540
BstACI	GRCGYC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	5 cut(s)	96, 118, 411, 510, 644
BstDSI	CCRYGG	2 cut(s)	260, 460
BstF5I	GGATG	3 cut(s)	491, 564, 616
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	334, 388, 594
BstMAI	GTCTC	6 cut(s)	156, 162, 346, 511, 520, 619
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 97, 271, 331, 447, 456, 459, 465, 544
BstNI	CCWGG	2 cut(s)	396, 540
BstSCI	CCNGG	3 cut(s)	381, 394, 538
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	280
BstZ17I	GTATAC	1 cut(s)	426
BstZI	CGGCCG	1 cut(s)	457
Bsu36I	CCTNAGG	1 cut(s)	644
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	5 cut(s)	265, 399, 441, 459, 649
BtgI	CCRYGG	2 cut(s)	260, 460
BtsCI	GGATG	3 cut(s)	491, 564, 616
Cac8I	GCNNGC	1 cut(s)	569
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	3 cut(s)	334, 388, 594
Cfr10I	RCCGGY	2 cut(s)	26, 520
Cfr13I	GGNCC	3 cut(s)	4, 347, 398
Cfr42I	CCGCGG	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	737
CspAI	ACCGGT	1 cut(s)	520
CviAII	CATG	1 cut(s)	261
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	5 cut(s)	96, 118, 411, 510, 644
DinI	GGCGCC	1 cut(s)	333
EaeI	YGGCCR	3 cut(s)	263, 439, 457
EagI	CGGCCG	1 cut(s)	457
EciI	GGCGGA	2 cut(s)	103, 124
EclXI	CGGCCG	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	569
Eco31I	GGTCTC	4 cut(s)	346, 511, 520, 619
Eco47I	GGWCC	2 cut(s)	4, 347
Eco52I	CGGCCG	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	394, 538
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	569
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	2 cut(s)	156, 162
FaeI	CATG	1 cut(s)	264
FaiI	YATR	3 cut(s)	231, 262, 426
FaqI	GGGAC	3 cut(s)	196, 365, 658
FatI	CATG	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	9 cut(s)	101, 266, 269, 272, 364, 451, 460, 463, 466
FokI	GGATG	3 cut(s)	478, 571, 603
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	9 cut(s)	101, 266, 269, 272, 364, 451, 460, 463, 466
GlaI	GCGC	3 cut(s)	333, 387, 593
GluI	GCNGC	9 cut(s)	101, 266, 269, 272, 364, 451, 460, 463, 466
GsaI	CCCAGC	4 cut(s)	82, 221, 599, 603
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	5 cut(s)	265, 399, 441, 459, 649
HapII	CCGG	5 cut(s)	27, 329, 345, 383, 521
HhaI	GCGC	3 cut(s)	334, 388, 594
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	3 cut(s)	332, 386, 592
HinP1I	GCGC	3 cut(s)	332, 386, 592
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	5 cut(s)	27, 329, 345, 383, 521
HphI	GGTGA	2 cut(s)	526, 535
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	2 cut(s)	55, 357
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	135, 171, 312
HpyCH4V	TGCA	2 cut(s)	547, 723
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 97, 271, 331, 447, 456, 459, 465, 544
HpyF3I	CTNAG	5 cut(s)	96, 118, 411, 510, 644
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	3 cut(s)	332, 386, 592
KasI	GGCGCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	344
KspI	CCGCGG	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	3 cut(s)	203, 462, 525
MboII	GAAGA	2 cut(s)	297, 300
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	3 cut(s)	496, 724, 731
Mly113I	GGCGCC	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	344
MspA1I	CMGCKG	2 cut(s)	462, 599
MspI	CCGG	5 cut(s)	27, 329, 345, 383, 521
MspR9I	CCNGG	3 cut(s)	383, 396, 540
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	396, 540
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	9 cut(s)	88, 97, 271, 331, 447, 456, 459, 465, 544
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	260
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	3 cut(s)	6, 333, 400
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	520
PkrI	GCNGC	9 cut(s)	102, 267, 270, 273, 365, 452, 461, 464, 467
PluTI	GGCGCC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	394, 538
PspFI	CCCAGC	4 cut(s)	78, 217, 595, 599
PspGI	CCWGG	2 cut(s)	394, 538
PspN4I	GGNNCC	3 cut(s)	6, 333, 400
PspPI	GGNCC	3 cut(s)	4, 347, 398
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
SacII	CCGCGG	1 cut(s)	463
SatI	GCNGC	9 cut(s)	101, 266, 269, 272, 364, 451, 460, 463, 466
Sau96I	GGNCC	3 cut(s)	4, 347, 398
ScrFI	CCNGG	3 cut(s)	383, 396, 540
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	8 cut(s)	97, 134, 241, 352, 431, 516, 601, 631
SfaNI	GCATC	3 cut(s)	203, 462, 525
SfoI	GGCGCC	1 cut(s)	333
Sfr303I	CCGCGG	1 cut(s)	463
SgrBI	CCGCGG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	4, 347
Sse9I	AATT	3 cut(s)	496, 724, 731
SspDI	GGCGCC	1 cut(s)	331
StyD4I	CCNGG	3 cut(s)	381, 394, 538
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	2 cut(s)	235, 578
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	3 cut(s)	496, 724, 731
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	8 cut(s)	103, 268, 274, 366, 453, 462, 465, 468
TfiI	GAWTC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	731
TspGWI	ACGGA	3 cut(s)	138, 144, 411
VpaK11BI	GGWCC	2 cut(s)	4, 347
XmiI	GTMKAC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.