Domain of unknown function (DUF4378)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17550 AT2G17550 |
| fragaria_vesca | FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 |
| malus_domestica | MD02G1115000.v1.1 MD15G1231000.v1.1 |
| prunus_persica | Prupe.7G183200_v2.0.a1 Prupe.7G183200_v2.0.a1 |
| pyrus_communis | pycom02g08990 pycom15g20580 |
| rosa_chinensis | RchiOBHm_Chr2g0097131 |
| rosa_laevigata | RLG00000016705 |
| rosa_multiflora | Rmu_sc0001182.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00144950 |
| rosa_rugosa | Rorug02G0064400 Rorug02G0064500 Rorug02G0064600 |
| rosa_samantha | Rh2AG111600 Rh2BG113600 Rh2CG115900 Rh2DG114900 |
| rosa_wichuraiana | Rw2G008680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2528 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 483, 2501 |
| AccI | GTMKAC | 1 cut(s) | 2319 |
| AccIII | TCCGGA | 1 cut(s) | 1850 |
| AciI | CCGC | 2 cut(s) | 84, 1784 |
| AclWI | GGATC | 3 cut(s) | 1292, 2547, 2554 |
| AcoI | YGGCCR | 2 cut(s) | 48, 2274 |
| AcsI | RAATTY | 7 cut(s) | 563, 1189, 1230, 1259, 1770, 1867, 2637 |
| AdeI | CACNNNGTG | 2 cut(s) | 483, 2329 |
| AfaI | GTAC | 4 cut(s) | 247, 688, 1572, 1733 |
| AflIII | ACRYGT | 2 cut(s) | 751, 1662 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1663 |
| AjiI | CACGTC | 1 cut(s) | 752 |
| AjnI | CCWGG | 9 cut(s) | 87, 108, 428, 584, 628, 922, 945, 1152, 1246 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1314, 1346 |
| Alw21I | GWGCWC | 2 cut(s) | 395, 1630 |
| Alw26I | GTCTC | 7 cut(s) | 947, 1088, 1291, 1852, 2001, 2096, 2536 |
| AlwI | GGATC | 3 cut(s) | 1292, 2547, 2554 |
| Ama87I | CYCGRG | 2 cut(s) | 1995, 2535 |
| Aor13HI | TCCGGA | 1 cut(s) | 1850 |
| AoxI | GGCC | 7 cut(s) | 48, 85, 273, 1389, 1829, 1931, 2274 |
| ApeKI | GCWGC | 7 cut(s) | 42, 115, 398, 581, 1905, 2032, 2425 |
| ApoI | RAATTY | 7 cut(s) | 563, 1189, 1230, 1259, 1770, 1867, 2637 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1005, 1309 |
| AspLEI | GCGC | 1 cut(s) | 2484 |
| AsuC2I | CCSGG | 3 cut(s) | 1575, 2536, 2537 |
| AsuHPI | GGTGA | 2 cut(s) | 500, 1030 |
| AsuII | TTCGAA | 2 cut(s) | 1313, 2244 |
| AvaI | CYCGRG | 2 cut(s) | 1995, 2535 |
| AxyI | CCTNAGG | 2 cut(s) | 714, 2070 |
| BalI | TGGCCA | 2 cut(s) | 50, 2276 |
| BanII | GRGCYC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 2 cut(s) | 395, 1630 |
| BbvI | GCAGC | 7 cut(s) | 54, 102, 385, 568, 1917, 2019, 2412 |
| BccI | CCATC | 8 cut(s) | 74, 283, 1123, 2171, 2199, 2234, 2495, 2596 |
| BceAI | ACGGC | 1 cut(s) | 1043 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 455, 489 |
| BciT130I | CCWGG | 9 cut(s) | 89, 110, 430, 586, 630, 924, 947, 1154, 1248 |
| BciVI | GTATCC | 1 cut(s) | 301 |
| BclI | TGATCA | 2 cut(s) | 216, 2613 |
| BcnI | CCSGG | 3 cut(s) | 1575, 2536, 2537 |
| BcoDI | GTCTC | 7 cut(s) | 947, 1088, 1291, 1852, 2001, 2096, 2536 |
| BfaI | CTAG | 8 cut(s) | 480, 1173, 1278, 1362, 1539, 1887, 1914, 2379 |
| BfmI | CTRYAG | 2 cut(s) | 318, 705 |
| BfoI | RGCGCY | 1 cut(s) | 2485 |
| BfuI | GTATCC | 1 cut(s) | 301 |
| BglII | AGATCT | 3 cut(s) | 1327, 1553, 2623 |
| BisI | GCNGC | 8 cut(s) | 43, 85, 116, 399, 582, 1906, 2033, 2426 |
| BlpI | GCTNAGC | 3 cut(s) | 394, 795, 2293 |
| BlsI | GCNGC | 8 cut(s) | 44, 86, 117, 400, 583, 1907, 2034, 2427 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1663 |
| BmeT110I | CYCGRG | 2 cut(s) | 1995, 2535 |
| BmgBI | CACGTC | 1 cut(s) | 752 |
| BmiI | GGNNCC | 6 cut(s) | 807, 1178, 1252, 1881, 2127, 2506 |
| BmrI | ACTGGG | 1 cut(s) | 1562 |
| BmsI | GCATC | 3 cut(s) | 463, 896, 1904 |
| BmuI | ACTGGG | 1 cut(s) | 1562 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 639, 671 |
| BpmI | CTGGAG | 3 cut(s) | 131, 412, 1622 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1196 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 394, 795, 2293 |
| Bpu14I | TTCGAA | 2 cut(s) | 1313, 2244 |
| BpuEI | CTTGAG | 3 cut(s) | 516, 1031, 2075 |
| BpuMI | CCSGG | 3 cut(s) | 1575, 2536, 2537 |
| BsaAI | YACGTR | 2 cut(s) | 2336, 2438 |
| BsaBI | GATNNNNATC | 3 cut(s) | 33, 911, 1558 |
| BsaI | GGTCTC | 1 cut(s) | 2536 |
| BsaJI | CCNNGG | 8 cut(s) | 512, 628, 1078, 1180, 1668, 1994, 2535, 2555 |
| BsaWI | WCCGGW | 1 cut(s) | 1850 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2516, 2546 |
| Bse1I | ACTGG | 2 cut(s) | 1568, 1627 |
| Bse21I | CCTNAGG | 2 cut(s) | 714, 2070 |
| Bse3DI | GCAATG | 2 cut(s) | 767, 1143 |
| Bse8I | GATNNNNATC | 3 cut(s) | 33, 911, 1558 |
| BseAI | TCCGGA | 1 cut(s) | 1850 |
| BseBI | CCWGG | 9 cut(s) | 89, 110, 430, 586, 630, 924, 947, 1154, 1248 |
| BseDI | CCNNGG | 8 cut(s) | 512, 628, 1078, 1180, 1668, 1994, 2535, 2555 |
| BseGI | GGATG | 4 cut(s) | 294, 526, 1632, 2650 |
| BseJI | GATNNNNATC | 3 cut(s) | 33, 911, 1558 |
| BseMI | GCAATG | 2 cut(s) | 767, 1143 |
| BseMII | CTCAG | 8 cut(s) | 143, 408, 786, 1210, 1866, 2061, 2250, 2307 |
| BseNI | ACTGG | 2 cut(s) | 1568, 1627 |
| BseRI | GAGGAG | 4 cut(s) | 21, 551, 1028, 2610 |
| BseXI | GCAGC | 7 cut(s) | 54, 102, 385, 568, 1917, 2019, 2412 |
| BseYI | CCCAGC | 3 cut(s) | 790, 1443, 2128 |
| BshFI | GGCC | 7 cut(s) | 50, 87, 275, 1391, 1831, 1933, 2276 |
| BsiHKAI | GWGCWC | 2 cut(s) | 395, 1630 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1995, 2535 |
| BsiSI | CCGG | 3 cut(s) | 1575, 1851, 2536 |
| BslFI | GGGAC | 5 cut(s) | 819, 1190, 1519, 2222, 2577 |
| BsmAI | GTCTC | 7 cut(s) | 947, 1088, 1291, 1852, 2001, 2096, 2536 |
| BsmFI | GGGAC | 5 cut(s) | 819, 1190, 1519, 2222, 2577 |
| BsnI | GGCC | 7 cut(s) | 50, 87, 275, 1391, 1831, 1933, 2276 |
| Bso31I | GGTCTC | 1 cut(s) | 2536 |
| BsoBI | CYCGRG | 2 cut(s) | 1995, 2535 |
| Bsp119I | TTCGAA | 2 cut(s) | 1313, 2244 |
| Bsp1286I | GDGCHC | 2 cut(s) | 395, 1630 |
| Bsp13I | TCCGGA | 1 cut(s) | 1850 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 394, 795, 2293 |
| Bsp19I | CCATGG | 1 cut(s) | 1668 |
| BspACI | CCGC | 2 cut(s) | 84, 1784 |
| BspANI | GGCC | 7 cut(s) | 50, 87, 275, 1391, 1831, 1933, 2276 |
| BspCNI | CTCAG | 8 cut(s) | 142, 407, 787, 1209, 1867, 2062, 2249, 2306 |
| BspEI | TCCGGA | 1 cut(s) | 1850 |
| BspHI | TCATGA | 1 cut(s) | 1821 |
| BspLI | GGNNCC | 6 cut(s) | 807, 1178, 1252, 1881, 2127, 2506 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspPI | GGATC | 3 cut(s) | 1292, 2547, 2554 |
| BspT104I | TTCGAA | 2 cut(s) | 1313, 2244 |
| BspTNI | GGTCTC | 1 cut(s) | 2536 |
| BsrDI | GCAATG | 2 cut(s) | 767, 1143 |
| BsrI | ACTGG | 2 cut(s) | 1568, 1627 |
| BssECI | CCNNGG | 8 cut(s) | 512, 628, 1078, 1180, 1668, 1994, 2535, 2555 |
| BssT1I | CCWWGG | 4 cut(s) | 512, 1180, 1668, 2555 |
| Bst2UI | CCWGG | 9 cut(s) | 89, 110, 430, 586, 630, 924, 947, 1154, 1248 |
| Bst4CI | ACNGT | 5 cut(s) | 706, 1610, 1736, 1837, 2365 |
| Bst6I | CTCTTC | 1 cut(s) | 945 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 893 |
| BstBAI | YACGTR | 2 cut(s) | 2336, 2438 |
| BstBI | TTCGAA | 2 cut(s) | 1313, 2244 |
| BstC8I | GCNNGC | 1 cut(s) | 579 |
| BstDSI | CCRYGG | 1 cut(s) | 1668 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 659 |
| BstF5I | GGATG | 4 cut(s) | 294, 526, 1632, 2650 |
| BstH2I | RGCGCY | 1 cut(s) | 2485 |
| BstHHI | GCGC | 1 cut(s) | 2484 |
| BstMAI | GTCTC | 7 cut(s) | 947, 1088, 1291, 1852, 2001, 2096, 2536 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 578, 893, 2038 |
| BstNI | CCWGG | 9 cut(s) | 89, 110, 430, 586, 630, 924, 947, 1154, 1248 |
| BstNSI | RCATGY | 2 cut(s) | 1666, 2389 |
| BstSFI | CTRYAG | 2 cut(s) | 318, 705 |
| BstV1I | GCAGC | 7 cut(s) | 54, 102, 385, 568, 1917, 2019, 2412 |
| BstX2I | RGATCY | 5 cut(s) | 1284, 1327, 1553, 2539, 2623 |
| BstYI | RGATCY | 5 cut(s) | 1284, 1327, 1553, 2539, 2623 |
| Bsu36I | CCTNAGG | 2 cut(s) | 714, 2070 |
| BsuI | GTATCC | 1 cut(s) | 301 |
| BsuRI | GGCC | 7 cut(s) | 50, 87, 275, 1391, 1831, 1933, 2276 |
| BtgI | CCRYGG | 1 cut(s) | 1668 |
| BtrI | CACGTC | 1 cut(s) | 752 |
| BtsCI | GGATG | 4 cut(s) | 294, 526, 1632, 2650 |
| BtsI | GCAGTG | 1 cut(s) | 1915 |
| BtsIMutI | CAGTG | 4 cut(s) | 1842, 1872, 1915, 2244 |
| Cac8I | GCNNGC | 1 cut(s) | 579 |
| CciI | TCATGA | 1 cut(s) | 1821 |
| CfoI | GCGC | 1 cut(s) | 2484 |
| Cfr9I | CCCGGG | 1 cut(s) | 2535 |
| CseI | GACGC | 1 cut(s) | 893 |
| CsiI | ACCWGGT | 3 cut(s) | 922, 1152, 1246 |
| Csp6I | GTAC | 4 cut(s) | 246, 687, 1571, 1732 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 252, 287 |
| CviQI | GTAC | 4 cut(s) | 246, 687, 1571, 1732 |
| DraI | TTTAAA | 1 cut(s) | 1708 |
| DraIII | CACNNNGTG | 2 cut(s) | 483, 2329 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2528 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1663 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2528 |
| EaeI | YGGCCR | 2 cut(s) | 48, 2274 |
| Eam1104I | CTCTTC | 1 cut(s) | 945 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1663 |
| EarI | CTCTTC | 1 cut(s) | 945 |
| Ecl136II | GAGCTC | 1 cut(s) | 393 |
| Eco130I | CCWWGG | 4 cut(s) | 512, 1180, 1668, 2555 |
| Eco24I | GRGCYC | 1 cut(s) | 395 |
| Eco31I | GGTCTC | 1 cut(s) | 2536 |
| Eco32I | GATATC | 1 cut(s) | 1819 |
| Eco53kI | GAGCTC | 1 cut(s) | 393 |
| Eco81I | CCTNAGG | 2 cut(s) | 714, 2070 |
| Eco88I | CYCGRG | 2 cut(s) | 1995, 2535 |
| EcoICRI | GAGCTC | 1 cut(s) | 393 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 659 |
| EcoO109I | RGGNCCY | 4 cut(s) | 652, 806, 1177, 2125 |
| EcoRI | GAATTC | 1 cut(s) | 1259 |
| EcoRII | CCWGG | 9 cut(s) | 87, 108, 428, 584, 628, 922, 945, 1152, 1246 |
| EcoRV | GATATC | 1 cut(s) | 1819 |
| EcoT14I | CCWWGG | 4 cut(s) | 512, 1180, 1668, 2555 |
| EcoT22I | ATGCAT | 1 cut(s) | 1059 |
| EcoT38I | GRGCYC | 1 cut(s) | 395 |
| ErhI | CCWWGG | 4 cut(s) | 512, 1180, 1668, 2555 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 993, 1025, 1294, 1326, 1503, 1535 |
| FaqI | GGGAC | 5 cut(s) | 819, 1190, 1519, 2222, 2577 |
| FbaI | TGATCA | 2 cut(s) | 216, 2613 |
| FblI | GTMKAC | 1 cut(s) | 2319 |
| Fnu4HI | GCNGC | 8 cut(s) | 43, 85, 116, 399, 582, 1906, 2033, 2426 |
| FokI | GGATG | 4 cut(s) | 301, 513, 1619, 2657 |
| FriOI | GRGCYC | 1 cut(s) | 395 |
| Fsp4HI | GCNGC | 8 cut(s) | 43, 85, 116, 399, 582, 1906, 2033, 2426 |
| FspBI | CTAG | 8 cut(s) | 480, 1173, 1278, 1362, 1539, 1887, 1914, 2379 |
| GlaI | GCGC | 1 cut(s) | 2483 |
| GluI | GCNGC | 8 cut(s) | 43, 85, 116, 399, 582, 1906, 2033, 2426 |
| GsaI | CCCAGC | 3 cut(s) | 794, 1447, 2132 |
| GsuI | CTGGAG | 3 cut(s) | 131, 412, 1622 |
| HaeII | RGCGCY | 1 cut(s) | 2485 |
| HaeIII | GGCC | 7 cut(s) | 50, 87, 275, 1391, 1831, 1933, 2276 |
| HapII | CCGG | 3 cut(s) | 1575, 1851, 2536 |
| HgaI | GACGC | 1 cut(s) | 893 |
| HhaI | GCGC | 1 cut(s) | 2484 |
| Hin6I | GCGC | 1 cut(s) | 2482 |
| HinP1I | GCGC | 1 cut(s) | 2482 |
| HincII | GTYRAC | 1 cut(s) | 619 |
| HindII | GTYRAC | 1 cut(s) | 619 |
| HpaII | CCGG | 3 cut(s) | 1575, 1851, 2536 |
| HphI | GGTGA | 2 cut(s) | 500, 1030 |
| Hpy166II | GTNNAC | 4 cut(s) | 619, 1040, 1109, 2320 |
| Hpy188I | TCNGA | 8 cut(s) | 132, 1079, 1204, 1493, 1686, 2006, 2025, 2062 |
| Hpy8I | GTNNAC | 4 cut(s) | 619, 1040, 1109, 2320 |
| HpyAV | CCTTC | 9 cut(s) | 367, 381, 420, 740, 1015, 1275, 1643, 1807, 2031 |
| HpyCH4III | ACNGT | 5 cut(s) | 706, 1610, 1736, 1837, 2365 |
| HpyCH4IV | ACGT | 5 cut(s) | 634, 751, 2335, 2437, 2580 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 578, 893, 2038 |
| HpySE526I | ACGT | 5 cut(s) | 634, 751, 2335, 2437, 2580 |
| HspAI | GCGC | 1 cut(s) | 2482 |
| Kpn2I | TCCGGA | 1 cut(s) | 1850 |
| Ksp22I | TGATCA | 2 cut(s) | 216, 2613 |
| LmnI | GCTCC | 5 cut(s) | 100, 112, 390, 901, 1126 |
| Lsp1109I | GCAGC | 7 cut(s) | 54, 102, 385, 568, 1917, 2019, 2412 |
| LweI | GCATC | 3 cut(s) | 463, 896, 1904 |
| MabI | ACCWGGT | 3 cut(s) | 922, 1152, 1246 |
| MaeI | CTAG | 8 cut(s) | 480, 1173, 1278, 1362, 1539, 1887, 1914, 2379 |
| MaeII | ACGT | 5 cut(s) | 634, 751, 2335, 2437, 2580 |
| MaeIII | GTNAC | 4 cut(s) | 941, 1168, 1796, 2331 |
| MfeI | CAATTG | 2 cut(s) | 693, 1779 |
| MflI | RGATCY | 5 cut(s) | 1284, 1327, 1553, 2539, 2623 |
| MhlI | GDGCHC | 2 cut(s) | 395, 1630 |
| MlsI | TGGCCA | 2 cut(s) | 50, 2276 |
| MluNI | TGGCCA | 2 cut(s) | 50, 2276 |
| MlyI | GAGTC | 5 cut(s) | 273, 1090, 1098, 2066, 2560 |
| MmeI | TCCRAC | 1 cut(s) | 2519 |
| Mox20I | TGGCCA | 2 cut(s) | 50, 2276 |
| Mph1103I | ATGCAT | 1 cut(s) | 1059 |
| MroI | TCCGGA | 1 cut(s) | 1850 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1005, 1309 |
| MscI | TGGCCA | 2 cut(s) | 50, 2276 |
| MseI | TTAA | 7 cut(s) | 419, 917, 1619, 1701, 1707, 2453, 2583 |
| MslI | CAYNNNNRTG | 3 cut(s) | 287, 1667, 1673 |
| Msp20I | TGGCCA | 2 cut(s) | 50, 2276 |
| MspA1I | CMGCKG | 2 cut(s) | 398, 794 |
| MspI | CCGG | 3 cut(s) | 1575, 1851, 2536 |
| MunI | CAATTG | 2 cut(s) | 693, 1779 |
| MvaI | CCWGG | 9 cut(s) | 89, 110, 430, 586, 630, 924, 947, 1154, 1248 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 578, 893, 2038 |
| NciI | CCSGG | 3 cut(s) | 1575, 2536, 2537 |
| NcoI | CCATGG | 1 cut(s) | 1668 |
| NlaIV | GGNNCC | 6 cut(s) | 807, 1178, 1252, 1881, 2127, 2506 |
| NsiI | ATGCAT | 1 cut(s) | 1059 |
| NspI | RCATGY | 2 cut(s) | 1666, 2389 |
| NspV | TTCGAA | 2 cut(s) | 1313, 2244 |
| PagI | TCATGA | 1 cut(s) | 1821 |
| PciI | ACATGT | 1 cut(s) | 1662 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1005, 1309 |
| PfeI | GAWTC | 5 cut(s) | 446, 1205, 1787, 2047, 2258 |
| PflFI | GACNNNGTC | 1 cut(s) | 2528 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 483, 2501 |
| PkrI | GCNGC | 8 cut(s) | 44, 86, 117, 400, 583, 1907, 2034, 2427 |
| PleI | GAGTC | 5 cut(s) | 273, 1090, 1097, 2065, 2559 |
| PpsI | GAGTC | 5 cut(s) | 273, 1090, 1097, 2065, 2559 |
| Ppu21I | YACGTR | 2 cut(s) | 2336, 2438 |
| PpuMI | RGGWCCY | 4 cut(s) | 652, 806, 1177, 2125 |
| PscI | ACATGT | 1 cut(s) | 1662 |
| Psp124BI | GAGCTC | 1 cut(s) | 395 |
| Psp5II | RGGWCCY | 4 cut(s) | 652, 806, 1177, 2125 |
| Psp6I | CCWGG | 9 cut(s) | 87, 108, 428, 584, 628, 922, 945, 1152, 1246 |
| PspFI | CCCAGC | 3 cut(s) | 790, 1443, 2128 |
| PspGI | CCWGG | 9 cut(s) | 87, 108, 428, 584, 628, 922, 945, 1152, 1246 |
| PspN4I | GGNNCC | 6 cut(s) | 807, 1178, 1252, 1881, 2127, 2506 |
| PspPPI | RGGWCCY | 4 cut(s) | 652, 806, 1177, 2125 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| PsuI | RGATCY | 5 cut(s) | 1284, 1327, 1553, 2539, 2623 |
| PsyI | GACNNNGTC | 1 cut(s) | 2528 |
| PvuII | CAGCTG | 2 cut(s) | 398, 794 |
| RsaI | GTAC | 4 cut(s) | 247, 688, 1572, 1733 |
| RsaNI | GTAC | 4 cut(s) | 246, 687, 1571, 1732 |
| RseI | CAYNNNNRTG | 3 cut(s) | 287, 1667, 1673 |
| SacI | GAGCTC | 1 cut(s) | 395 |
| SaqAI | TTAA | 7 cut(s) | 419, 917, 1619, 1701, 1707, 2453, 2583 |
| SatI | GCNGC | 8 cut(s) | 43, 85, 116, 399, 582, 1906, 2033, 2426 |
| SchI | GAGTC | 5 cut(s) | 273, 1090, 1098, 2066, 2560 |
| SduI | GDGCHC | 2 cut(s) | 395, 1630 |
| SexAI | ACCWGGT | 3 cut(s) | 922, 1152, 1246 |
| SfaNI | GCATC | 3 cut(s) | 463, 896, 1904 |
| SfcI | CTRYAG | 2 cut(s) | 318, 705 |
| SfuI | TTCGAA | 2 cut(s) | 1313, 2244 |
| SmaI | CCCGGG | 1 cut(s) | 2537 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 287, 1667, 1673 |
| SmlI | CTYRAG | 3 cut(s) | 531, 1010, 2054 |
| SmoI | CTYRAG | 3 cut(s) | 531, 1010, 2054 |
| SsiI | CCGC | 2 cut(s) | 84, 1784 |
| SspI | AATATT | 1 cut(s) | 1987 |
| SspMI | CTAG | 8 cut(s) | 480, 1173, 1278, 1362, 1539, 1887, 1914, 2379 |
| SstI | GAGCTC | 1 cut(s) | 395 |
| StyI | CCWWGG | 4 cut(s) | 512, 1180, 1668, 2555 |
| TaaI | ACNGT | 5 cut(s) | 706, 1610, 1736, 1837, 2365 |
| TaiI | ACGT | 5 cut(s) | 637, 754, 2338, 2440, 2583 |
| TaqI | TCGA | 9 cut(s) | 242, 612, 646, 1092, 1138, 1313, 2100, 2244, 2549 |
| TauI | GCSGC | 1 cut(s) | 87 |
| TfiI | GAWTC | 5 cut(s) | 446, 1205, 1787, 2047, 2258 |
| Tru1I | TTAA | 7 cut(s) | 419, 917, 1619, 1701, 1707, 2453, 2583 |
| Tru9I | TTAA | 7 cut(s) | 419, 917, 1619, 1701, 1707, 2453, 2583 |
| TscAI | CASTG | 4 cut(s) | 1842, 1879, 1915, 2244 |
| TseI | GCWGC | 7 cut(s) | 42, 115, 398, 581, 1905, 2032, 2425 |
| TspGWI | ACGGA | 1 cut(s) | 2633 |
| TspMI | CCCGGG | 1 cut(s) | 2535 |
| TspRI | CASTG | 4 cut(s) | 1842, 1879, 1915, 2244 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2528 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 483, 2501 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 659 |
| XapI | RAATTY | 7 cut(s) | 563, 1189, 1230, 1259, 1770, 1867, 2637 |
| XceI | RCATGY | 2 cut(s) | 1666, 2389 |
| XmaI | CCCGGG | 1 cut(s) | 2535 |
| XmiI | GTMKAC | 1 cut(s) | 2319 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1005, 1309 |
| XspI | CTAG | 8 cut(s) | 480, 1173, 1278, 1362, 1539, 1887, 1914, 2379 |
| Zsp2I | ATGCAT | 1 cut(s) | 1059 |