Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005501

Physical Location & Seq

Genomic Coordinates Reverse (-)

6196881 .. 6198837

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGCAGCTTATTGCACCTTTTAAATTTCAACCAGGACAGCATGGCCAGAAAGCTTTTTACACACAAGAAGCATGATGGTGGCCTTGATGCTCCAAGAAATAGCCTGGAAATGCAGGTAGAACCTCAGAGCTATTGCGATGCAGGAGATTTGCCGGTTGAAGAAGACTGGCCTAAAAAGAATAATCCATTGGAACAAAGTTCAATGAAGAAATTAATTAATGACGAAATATCCAAACTTTCAAGTACCAGAAAAAATGCACCAAACATTGTGGCTCAACTAATGGGCATGGATATGTTTCCAGTGGAACCGAAATCTGCAGTTCAGCCTCTGGAAGAAAATGGAAAAAATAGGAGAACGAAGTCTTTGAAAAAGGAAATTAATGGAAGGACCTCAGTTGGTCATGTTTCTTCAAAGCTAAATTCTTCAGGGCAGATGGATCTTGATTCGTATTATCACAGTAATGAGAGAGATGCCACTAGGTGGAGTGATAACCAGAAAATCGAAAATCCAAGGCGTAGAGTACATCCTCAAGAAGAAGAACTGAAAAAGTTCAAGAAAGAATTTGAAGCATGGCAAGCTTCCAGGTTTAGGGAATGCTCAAGGATTGTCGAAATTGACAGAGACCTCAACGAGGAAAAGATGGTGGTTTCAGGGCATAGAGCAACTGAGAGAACATTAGAACATAAGGATCATGCCGTCAAAGCAATCTCTCATGAAGGTGGTGTTTTGGAACGTAGAGGAGATGAGTTTTCGGAACTATTCCCAGCCGAGCATACAGAGTATTTGTCTTCAAGAAGCAGAAGAACCATGAGCTTAGACTTTGAGAAATCTTCCCTGATGAACTGTAAGAAGAGATTCGAGTCATTCGACGCATCTTCTGCTTCTACAAGGATAGTTATCTTAAGACCTGGTCCCGATAGACTTTGCAACCATGAAGAGACTTGGGCAGGTTCTTCAAACACTCTAGAGAGGAAAGGTGGTATAGAAGATTTTCTCGAGGAGGTGAAAGAACGACTGAGATGCGAGCTGCGAGGGAAAATGCATACAAGGGGTTCTGTTGTCCGAGGAAGTGGAATTGAGACCCCATTTAGCGAACAGCCATCAGCTCCGAAGCAAATTGCTCAACACATTGCAAACCAGGTTAGAGAAAGTGTGACTAGGGACCTTGGCATGAATTTGCTGAGATCAGAATCGACAAGATCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 NTPase_1 VARLMGL

Protein Analysis

404

Amino Acids

46.12

Weight (kDa)

8.18

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17550 AT2G17550
fragaria_vesca	FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290
malus_domestica	MD02G1115000.v1.1 MD15G1231000.v1.1
prunus_persica	Prupe.7G183200_v2.0.a1 Prupe.7G183200_v2.0.a1
pyrus_communis	pycom02g08990 pycom15g20580
rosa_chinensis	RchiOBHm_Chr2g0097131
rosa_laevigata	RLG00000016705
rosa_multiflora	Rmu_sc0001182.1_g000005
rosa_roxburghii	Rroxscaffold_2G00144950
rosa_rugosa	Rorug02G0064400 Rorug02G0064500 Rorug02G0064600
rosa_samantha	Rh2AG111600 Rh2BG113600 Rh2CG115900 Rh2DG114900
rosa_wichuraiana	Rw2G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 941
AccB7I	CCANNNNNTGG	1 cut(s)	483
AclWI	GGATC	2 cut(s)	447, 699
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	4 cut(s)	25, 421, 563, 1177
AcuI	CTGAAG	1 cut(s)	411
AdeI	CACNNNGTG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	247, 525
AfiI	CCNNNNNNNGG	3 cut(s)	483, 591, 634
AflII	CTTAAG	1 cut(s)	904
AjnI	CCWGG	5 cut(s)	33, 105, 584, 910, 1140
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	9, 55, 132, 418, 581, 816, 1030, 1109
AluI	AGCT	8 cut(s)	9, 55, 132, 418, 581, 816, 1030, 1109
Alw26I	GTCTC	3 cut(s)	618, 935, 1076
AlwI	GGATC	2 cut(s)	447, 699
AlwNI	CAGNNNCTG	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	998
AoxI	GGCC	3 cut(s)	45, 82, 170
ApeKI	GCWGC	2 cut(s)	6, 1030
ApoI	RAATTY	4 cut(s)	25, 421, 563, 1177
AseI	ATTAAT	3 cut(s)	215, 219, 381
Asp700I	GAANNNNTTC	3 cut(s)	551, 857, 993
AspS9I	GGNCC	3 cut(s)	390, 914, 1165
AsuHPI	GGTGA	1 cut(s)	1018
AvaI	CYCGRG	1 cut(s)	998
AvaII	GGWCC	3 cut(s)	390, 914, 1165
BalI	TGGCCA	1 cut(s)	47
BbsI	GAAGAC	2 cut(s)	171, 783
BbvI	GCAGC	2 cut(s)	18, 1017
BccI	CCATC	4 cut(s)	71, 430, 637, 1111
BceAI	ACGGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	5 cut(s)	35, 107, 586, 912, 1142
BcoDI	GTCTC	3 cut(s)	618, 935, 1076
BfaI	CTAG	3 cut(s)	480, 968, 1161
BfmI	CTRYAG	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	904
BfuAI	ACCTGC	2 cut(s)	106, 941
BisI	GCNGC	2 cut(s)	7, 1031
BlsI	GCNGC	2 cut(s)	8, 1032
Bme1390I	CCNGG	5 cut(s)	35, 107, 586, 912, 1142
Bme18I	GGWCC	3 cut(s)	390, 914, 1165
BmeT110I	CYCGRG	1 cut(s)	998
BmgT120I	GGNCC	3 cut(s)	390, 914, 1165
BmiI	GGNNCC	3 cut(s)	309, 916, 1166
BmrFI	CCNGG	5 cut(s)	35, 107, 586, 912, 1142
BmsI	GCATC	5 cut(s)	79, 130, 463, 884, 1013
BpiI	GAAGAC	2 cut(s)	171, 783
BpuEI	CTTGAG	2 cut(s)	516, 586
Bsa29I	ATCGAT	1 cut(s)	1205
BsaBI	GATNNNNATC	2 cut(s)	899, 1192
BsaI	GGTCTC	2 cut(s)	618, 1076
BsaJI	CCNNGG	3 cut(s)	512, 1066, 1168
Bsc4I	CCNNNNNNNGG	3 cut(s)	483, 591, 634
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	173, 302
Bse3DI	GCAATG	1 cut(s)	1131
Bse8I	GATNNNNATC	2 cut(s)	899, 1192
BseBI	CCWGG	5 cut(s)	35, 107, 586, 912, 1142
BseCI	ATCGAT	1 cut(s)	1205
BseDI	CCNNGG	3 cut(s)	512, 1066, 1168
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	2 cut(s)	899, 1192
BseLI	CCNNNNNNNGG	3 cut(s)	483, 591, 634
BseMI	GCAATG	1 cut(s)	1131
BseMII	CTCAG	5 cut(s)	140, 408, 660, 1010, 1175
BseNI	ACTGG	2 cut(s)	173, 302
BseRI	GAGGAG	2 cut(s)	756, 1016
BseXI	GCAGC	2 cut(s)	18, 1017
BseYI	CCCAGC	1 cut(s)	766
BshFI	GGCC	3 cut(s)	47, 84, 172
BshVI	ATCGAT	1 cut(s)	1205
BsiHKCI	CYCGRG	1 cut(s)	998
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	900, 1178
BslI	CCNNNNNNNGG	3 cut(s)	483, 591, 634
BsmAI	GTCTC	3 cut(s)	618, 935, 1076
BsmFI	GGGAC	2 cut(s)	900, 1178
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	47, 84, 172
Bso31I	GGTCTC	2 cut(s)	618, 1076
BsoBI	CYCGRG	1 cut(s)	998
Bsp143I	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
BspANI	GGCC	3 cut(s)	47, 84, 172
BspCNI	CTCAG	5 cut(s)	139, 407, 661, 1011, 1176
BspDI	ATCGAT	1 cut(s)	1205
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	309, 916, 1166
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	2 cut(s)	106, 941
BspPI	GGATC	2 cut(s)	447, 699
BspTI	CTTAAG	1 cut(s)	904
BspTNI	GGTCTC	2 cut(s)	618, 1076
BsrDI	GCAATG	1 cut(s)	1131
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	173, 302
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	512, 1066, 1168
BssMI	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
BssT1I	CCWWGG	2 cut(s)	512, 1168
Bst2UI	CCWGG	5 cut(s)	35, 107, 586, 912, 1142
Bst4CI	ACNGT	2 cut(s)	461, 848
Bst6I	CTCTTC	2 cut(s)	848, 933
BstAFI	CTTAAG	1 cut(s)	904
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	579, 1028
BstDEI	CTNAG	6 cut(s)	126, 394, 669, 817, 1019, 1184
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	5 cut(s)	442, 694, 1190, 1205, 1209
BstMAI	GTCTC	3 cut(s)	618, 935, 1076
BstMBI	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
BstMWI	GCNNNNNNNGC	3 cut(s)	578, 704, 881
BstNI	CCWGG	5 cut(s)	35, 107, 586, 912, 1142
BstSCI	CCNGG	5 cut(s)	33, 105, 584, 910, 1140
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	18, 1017
BstV2I	GAAGAC	2 cut(s)	171, 783
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	1205
BsuRI	GGCC	3 cut(s)	47, 84, 172
BsuTUI	ATCGAT	1 cut(s)	1205
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	2 cut(s)	106, 941
Cac8I	GCNNGC	2 cut(s)	579, 1028
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	390, 914, 1165
ClaI	ATCGAT	1 cut(s)	1205
CseI	GACGC	1 cut(s)	881
CsiI	ACCWGGT	2 cut(s)	910, 1140
Csp6I	GTAC	2 cut(s)	246, 524
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviQI	GTAC	2 cut(s)	246, 524
DdeI	CTNAG	6 cut(s)	126, 394, 669, 817, 1019, 1184
DpnI	GATC	5 cut(s)	441, 693, 1189, 1204, 1208
DpnII	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
DraI	TTTAAA	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	848, 933
EarI	CTCTTC	2 cut(s)	848, 933
Eco130I	CCWWGG	2 cut(s)	512, 1168
Eco31I	GGTCTC	2 cut(s)	618, 1076
Eco47I	GGWCC	3 cut(s)	390, 914, 1165
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	998
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoO109I	RGGNCCY	2 cut(s)	390, 1165
EcoRII	CCWGG	5 cut(s)	33, 105, 584, 910, 1140
EcoT14I	CCWWGG	2 cut(s)	512, 1168
EcoT22I	ATGCAT	1 cut(s)	1047
ErhI	CCWWGG	2 cut(s)	512, 1168
FaqI	GGGAC	2 cut(s)	900, 1178
Fnu4HI	GCNGC	2 cut(s)	7, 1031
FokI	GGATG	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	7, 1031
FspBI	CTAG	3 cut(s)	480, 968, 1161
GluI	GCNGC	2 cut(s)	7, 1031
GsaI	CCCAGC	1 cut(s)	770
HaeIII	GGCC	3 cut(s)	47, 84, 172
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	881
HindIII	AAGCTT	2 cut(s)	53, 579
HinfI	GANTC	4 cut(s)	446, 858, 863, 1193
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	1018
Hpy188I	TCNGA	5 cut(s)	129, 757, 1067, 1113, 1192
Hpy188III	TCNNGA	9 cut(s)	332, 443, 533, 556, 716, 795, 917, 968, 998
Hpy99I	CGWCG	1 cut(s)	875
HpyAV	CCTTC	2 cut(s)	381, 713
HpyCH4III	ACNGT	2 cut(s)	461, 848
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	8 cut(s)	16, 115, 143, 260, 320, 930, 1045, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	578, 704, 881
HpyF3I	CTNAG	6 cut(s)	126, 394, 669, 817, 1019, 1184
HpySE526I	ACGT	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
LmnI	GCTCC	2 cut(s)	97, 1114
Lsp1109I	GCAGC	2 cut(s)	18, 1017
LweI	GCATC	5 cut(s)	79, 130, 463, 884, 1013
MabI	ACCWGGT	2 cut(s)	910, 1140
MaeI	CTAG	3 cut(s)	480, 968, 1161
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	1 cut(s)	1156
MalI	GATC	5 cut(s)	441, 693, 1189, 1204, 1208
MboI	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
MflI	RGATCY	1 cut(s)	439
MlsI	TGGCCA	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	872
Mox20I	TGGCCA	1 cut(s)	47
Mph1103I	ATGCAT	1 cut(s)	1047
MroXI	GAANNNNTTC	3 cut(s)	551, 857, 993
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	5 cut(s)	23, 215, 219, 381, 905
MslI	CAYNNNNRTG	4 cut(s)	78, 293, 462, 720
Msp20I	TGGCCA	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	904
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	5 cut(s)	35, 107, 586, 912, 1142
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	5 cut(s)	35, 107, 586, 912, 1142
MwoI	GCNNNNNNNGC	3 cut(s)	578, 704, 881
NdeII	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
NlaIV	GGNNCC	3 cut(s)	309, 916, 1166
NmeAIII	GCCGAG	1 cut(s)	796
NmuCI	GTSAC	1 cut(s)	1156
NsiI	ATGCAT	1 cut(s)	1047
PacI	TTAATTAA	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	998
PagI	TCATGA	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	2 cut(s)	867, 1202
PctI	GAATGC	1 cut(s)	602
PdmI	GAANNNNTTC	3 cut(s)	551, 857, 993
PfeI	GAWTC	3 cut(s)	446, 858, 1193
PflFI	GACNNNGTC	1 cut(s)	912
PflMI	CCANNNNNTGG	1 cut(s)	483
PkrI	GCNGC	2 cut(s)	8, 1032
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PpuMI	RGGWCCY	2 cut(s)	390, 1165
PshBI	ATTAAT	3 cut(s)	215, 219, 381
Psp5II	RGGWCCY	2 cut(s)	390, 1165
Psp6I	CCWGG	5 cut(s)	33, 105, 584, 910, 1140
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	5 cut(s)	33, 105, 584, 910, 1140
PspN4I	GGNNCC	3 cut(s)	309, 916, 1166
PspPI	GGNCC	3 cut(s)	390, 914, 1165
PspPPI	RGGWCCY	2 cut(s)	390, 1165
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	912
RsaI	GTAC	2 cut(s)	247, 525
RsaNI	GTAC	2 cut(s)	246, 524
RseI	CAYNNNNRTG	4 cut(s)	78, 293, 462, 720
SaqAI	TTAA	5 cut(s)	23, 215, 219, 381, 905
SatI	GCNGC	2 cut(s)	7, 1031
Sau3AI	GATC	5 cut(s)	439, 691, 1187, 1202, 1206
Sau96I	GGNCC	3 cut(s)	390, 914, 1165
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	5 cut(s)	35, 107, 586, 912, 1142
SexAI	ACCWGGT	2 cut(s)	910, 1140
SfaNI	GCATC	5 cut(s)	79, 130, 463, 884, 1013
SfcI	CTRYAG	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	998
SinI	GGWCC	3 cut(s)	390, 914, 1165
SlaI	CTCGAG	1 cut(s)	998
SmiMI	CAYNNNNRTG	4 cut(s)	78, 293, 462, 720
SmlI	CTYRAG	4 cut(s)	531, 601, 904, 998
SmoI	CTYRAG	4 cut(s)	531, 601, 904, 998
SspMI	CTAG	3 cut(s)	480, 968, 1161
StyD4I	CCNGG	5 cut(s)	33, 105, 584, 910, 1140
StyI	CCWWGG	2 cut(s)	512, 1168
TaaI	ACNGT	2 cut(s)	461, 848
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	7 cut(s)	504, 612, 861, 870, 999, 1196, 1205
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	3 cut(s)	446, 858, 1193
Tru1I	TTAA	5 cut(s)	23, 215, 219, 381, 905
Tru9I	TTAA	5 cut(s)	23, 215, 219, 381, 905
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	1156
TseI	GCWGC	2 cut(s)	6, 1030
Tsp45I	GTSAC	1 cut(s)	1156
TspDTI	ATGAA	5 cut(s)	221, 732, 857, 951, 1190
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	912
Van91I	CCANNNNNTGG	1 cut(s)	483
Vha464I	CTTAAG	1 cut(s)	904
VpaK11BI	GGWCC	3 cut(s)	390, 914, 1165
VspI	ATTAAT	3 cut(s)	215, 219, 381
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	4 cut(s)	25, 421, 563, 1177
XbaI	TCTAGA	1 cut(s)	967
XhoI	CTCGAG	1 cut(s)	998
XmnI	GAANNNNTTC	3 cut(s)	551, 857, 993
XspI	CTAG	3 cut(s)	480, 968, 1161
Zsp2I	ATGCAT	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.