Rroxscaffold_2G00144950

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005501
Physical Location & Seq
Forward (+)
82822709 .. 82825578
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144950.1

Sequence Viewer

Length: 2196 bp
ATGGACCAAGCATTGTGGCACGGCTTTATGGGGATGGATATGTTGCCTACGGATACAAAGTCAGCAGTTCAGCCAATTGAGGACAAACATGAATATAGGAGAACGAAGTCTTCAAAGAAGGAAATGAATGGAAGGAGCTCAGTTGATCGTGTCTCTTCCAACTTAAATTCCTCCAGAGTGTTAGATCTTGATTCCTTTTATCAAAATAATGGCACAGATGACGCTGGATGGAGTGAAGATCAGAAAATTGGAAAACCAAGGCGTGAAGAACATCCTCAAGAGGAGGAACTACAGAAGATTGTCGAAAATGACAACAATCAAGGTGAGTTGCTAGCTCAAGAGCACCTCAACAAGGAAAAGACAGCAGTTTCTGCAAAATCCAAGCAAACAACAATTGAGAAGACTATGGAAAGAATAGATCACACAGTAAAAGAAATCTCACATGAAAGAGGTGTTTCGTCACATCGTGTAGATATAATGGATTTATTCCCACCTGAGTACACCAGATCTTTATCTTCAAAAAGCAGAACCAAGAGCTTAGACTTTGAGCAATCCTCCCTGATGAATTCCAGGAAGAGAGTGAACATATCTTCTGCTCCTACAAGGATAGTTATCTTAAAACCTGGTCCTGATACCTTTTGCAACCATGAAGAGACTTGGATCAATTCCCCAAGCACTTCAGAGCAGAGGGGTAGCATAGAAGATTTTCTTGAGGAGGTGAAGGATCGACTGAGATGTGAACTCCAAGGGAAGGTGCATAAAAGGGGTTCAGTTGTCCGAGGAAGTGGAATTGAGACCCCATTTAGTGAACAGCCATCGGATCCAAAGCAAATTGCTCGTCACATTGCAAACCAGGTCAGAGAAAGTGTGACTAGGGATCTTGGAGTGAATTTGCTTCGATCAGAATCAACAAGATCATACAGAAGTGAAATTCAATATAATGGAGCTCCAGAATTCATACATAGAGATACTAGAAGATTCCTGTTAGAGAGACTAAGAAATGTTTCAGAAAGAGAGACAGAACTTAATTCTCCTGTATTAACTTCTGGCAGCTATAGTTCATCTGCACTAGACTATGAGAGGGTCAGATTAAAACAGGTGGGATATACTTTGGAAGCTCAAAAAGATATGAGTTTCTGGGGAAGAGGAATGGTGAAAGATGACCATGTAAAAACCAGATCATTCAGGCATGGACCAGATGACGACGATAAGTTGCTCGATCGAGAGTTGTCCCCTAGAAATCTCGTTAGGTCCTTATCTGCCCCAGTATCCGGAACATCATTTGGGAAGCTTCTTCTGGAGAACCGCCACATTTTGACTGGTGCTCACATTCAGAGGAAGCATGAAGCCATTGAACATGTGTCCTTGGGATATGAAGAGTCAGAAGAAAGAAAGGATAATTTCACCGAGGTGCCTCCTAGTCCTGCATCTGTGTGCAGCACTGCTCAGGACGATTTCTGCAGGACAGCTGATTGTCTTAGTCCAATATCAACTCCAAATGCAACTCCAAGAGAAGATAGACTTGTGCCACAGGCATTCAGAGACATCAGTGATAATCTAAGTGAACTGAGAAGGCAACTGAATCAACTCGAGTCTGATGAGCCGGACGATGCATCTGTTGAACAGGAAGTGATTGAATCTGAAATGTCTGGACTAGACAACCCGGCAGAGGTTTACATACGAGATTTGCTTGTTGCTTCTGGTCTGTACGATGGATCATTTGAGAAATCCTTTTCGAGATGGGACACGTTTGGGAAGCCCATCAGCCTCTCCGTGTTCAAAGAAGTGGAGGAATCTTATAAAAAGCTGGCCAATGATCACGATAGCTCAACCAAAGATCACAATGGGAAGGCAAATCACAAGTTGCTACTTGATTTGTTGAACGAAGCTCTTTCAACTGTTCTTGGACCTCCATTAAACATTTCTAAATTCAGAAGAAAACCTGTCAACTCCTCTGACCTGCCACCTTTACGTGGTAAGAAGCTGTTGGATTCTGTTTGGGAGATTATATGTCATTATCTATACCCTCCAAACGATAGACACTATCACTCCCTCGATGAAATAGTTTCCCGGGATCTGGGATCCTCACCGTGGTCGGAACTGGTGGAGGAAGACATTAATGTTCTCGGAAGAGAGATTGAAACTCTGATTATGAGAGATCTTGTTACAGAAGTTTTGGATGATGTGAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 NTPase_1 VARLMGL

Protein Analysis

731

Amino Acids

83.31

Weight (kDa)

5.49

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 558 - 724 7.9e-36 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1800
Acc36I ACCTGC 1 cut(s) 1968
AccB1I GGYRCC 1 cut(s) 1411
AccIII TCCGGA 1 cut(s) 1271
AciI CCGC 1 cut(s) 1306
AclWI GGATC 9 cut(s) 668, 732, 815, 828, 885, 1723, 2076, 2082, 2089
AcoI YGGCCR 1 cut(s) 1809
AcsI RAATTY 6 cut(s) 166, 565, 889, 930, 953, 1928
AcuI CTGAAG 1 cut(s) 663
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 2 cut(s) 500, 1709
AfiI CCNNNNNNNGG 7 cut(s) 352, 751, 1271, 1669, 1973, 2077, 2091
AflIII ACRYGT 2 cut(s) 1357, 1746
AjnI CCWGG 3 cut(s) 569, 622, 852
AleI CACNNNNGTG 1 cut(s) 1409
Alw21I GWGCWC 4 cut(s) 140, 345, 949, 1327
Alw26I GTCTC 6 cut(s) 157, 647, 788, 985, 1010, 1536
AlwI GGATC 9 cut(s) 668, 732, 815, 828, 885, 1723, 2076, 2082, 2089
AlwNI CAGNNNCTG 1 cut(s) 371
Ama87I CYCGRG 2 cut(s) 1589, 2070
Aor13HI TCCGGA 1 cut(s) 1271
AoxI GGCC 1 cut(s) 1809
ApeKI GCWGC 2 cut(s) 1050, 1437
ApoI RAATTY 6 cut(s) 166, 565, 889, 930, 953, 1928
ArsI GACNNNNNNTTYG 2 cut(s) 823, 855
AseI ATTAAT 1 cut(s) 2118
Asp700I GAANNNNTTC 2 cut(s) 705, 1003
AspS9I GGNCC 5 cut(s) 4, 626, 1193, 1251, 1907
AsuC2I CCSGG 3 cut(s) 1664, 2071, 2072
AsuHPI GGTGA 5 cut(s) 335, 730, 1165, 1396, 2079
AsuNHI GCTAGC 1 cut(s) 331
AvaI CYCGRG 2 cut(s) 1589, 2070
AvaII GGWCC 5 cut(s) 4, 626, 1193, 1251, 1907
BalI TGGCCA 1 cut(s) 1811
BamHI GGATCC 2 cut(s) 820, 2081
BanI GGYRCC 1 cut(s) 1411
BanII GRGCYC 2 cut(s) 140, 949
BbsI GAAGAC 3 cut(s) 102, 407, 2118
Bbv12I GWGCWC 4 cut(s) 140, 345, 949, 1327
BbvI GCAGC 2 cut(s) 1062, 1449
BccI CCATC 6 cut(s) 28, 222, 823, 1706, 1734, 1769
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BciT130I CCWGG 3 cut(s) 571, 624, 854
BciVI GTATCC 2 cut(s) 46, 1279
BclI TGATCA 1 cut(s) 1816
BcnI CCSGG 3 cut(s) 1664, 2071, 2072
BcoDI GTCTC 6 cut(s) 157, 647, 788, 985, 1010, 1536
BfaI CTAG 7 cut(s) 332, 873, 972, 1070, 1236, 1419, 1655
BfmI CTRYAG 3 cut(s) 290, 1054, 1459
BfuAI ACCTGC 1 cut(s) 1968
BfuI GTATCC 2 cut(s) 46, 1279
BglII AGATCT 3 cut(s) 184, 506, 2158
BisI GCNGC 2 cut(s) 1051, 1438
BlsI GCNGC 2 cut(s) 1052, 1439
Bme1390I CCNGG 6 cut(s) 571, 624, 854, 1664, 2071, 2072
Bme18I GGWCC 5 cut(s) 4, 626, 1193, 1251, 1907
BmeT110I CYCGRG 2 cut(s) 1589, 2070
BmgT120I GGNCC 5 cut(s) 4, 626, 1193, 1251, 1907
BmiI GGNNCC 3 cut(s) 822, 1413, 2083
BmrFI CCNGG 6 cut(s) 571, 624, 854, 1664, 2071, 2072
BmrI ACTGGG 1 cut(s) 1259
BmsI GCATC 3 cut(s) 1436, 1600, 1622
BmtI GCTAGC 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 1259
BpiI GAAGAC 3 cut(s) 102, 407, 2118
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 3 cut(s) 157, 933, 1319
Bpu10I CCTNAGC 1 cut(s) 1446
BpuEI CTTGAG 3 cut(s) 261, 321, 731
BpuMI CCSGG 3 cut(s) 1664, 2071, 2072
BsaAI YACGTR 1 cut(s) 1973
BsaBI GATNNNNATC 3 cut(s) 511, 611, 904
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 7 cut(s) 257, 745, 778, 1365, 1407, 2070, 2090
BsaWI WCCGGW 1 cut(s) 1271
BsaXI ACNNNNNCTCC 2 cut(s) 2033, 2063
Bsc4I CCNNNNNNNGG 7 cut(s) 352, 751, 1271, 1669, 1973, 2077, 2091
Bse1I ACTGG 3 cut(s) 1265, 1324, 2106
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 3 cut(s) 511, 611, 904
BseAI TCCGGA 1 cut(s) 1271
BseBI CCWGG 3 cut(s) 571, 624, 854
BseDI CCNNGG 7 cut(s) 257, 745, 778, 1365, 1407, 2070, 2090
BseGI GGATG 4 cut(s) 39, 233, 271, 2185
BseJI GATNNNNATC 3 cut(s) 511, 611, 904
BseLI CCNNNNNNNGG 7 cut(s) 352, 751, 1271, 1669, 1973, 2077, 2091
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 5 cut(s) 153, 486, 722, 1460, 1559
BseNI ACTGG 3 cut(s) 1265, 1324, 2106
BseRI GAGGAG 3 cut(s) 296, 728, 1942
BseXI GCAGC 2 cut(s) 1062, 1449
BsgI GTGCAG 2 cut(s) 1050, 1456
Bsh1285I CGRYCG 1 cut(s) 1222
BshFI GGCC 1 cut(s) 1811
BshNI GGYRCC 1 cut(s) 1411
BsiEI CGRYCG 1 cut(s) 1222
BsiHKAI GWGCWC 4 cut(s) 140, 345, 949, 1327
BsiHKCI CYCGRG 2 cut(s) 1589, 2070
BsiSI CCGG 4 cut(s) 1272, 1604, 1664, 2071
BslFI GGGAC 2 cut(s) 1216, 1757
BslI CCNNNNNNNGG 7 cut(s) 352, 751, 1271, 1669, 1973, 2077, 2091
BsmAI GTCTC 6 cut(s) 157, 647, 788, 985, 1010, 1536
BsmFI GGGAC 2 cut(s) 1216, 1757
BsmI GAATGC 1 cut(s) 1535
BsnI GGCC 1 cut(s) 1811
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 2 cut(s) 1589, 2070
Bsp1286I GDGCHC 4 cut(s) 140, 345, 949, 1327
Bsp13I TCCGGA 1 cut(s) 1271
BspACI CCGC 1 cut(s) 1306
BspANI GGCC 1 cut(s) 1811
BspCNI CTCAG 5 cut(s) 152, 487, 723, 1459, 1560
BspEI TCCGGA 1 cut(s) 1271
BspLI GGNNCC 3 cut(s) 822, 1413, 2083
BspMAI CTGCAG 1 cut(s) 1463
BspMI ACCTGC 1 cut(s) 1968
BspOI GCTAGC 1 cut(s) 335
BspPI GGATC 9 cut(s) 668, 732, 815, 828, 885, 1723, 2076, 2082, 2089
BspT107I GGYRCC 1 cut(s) 1411
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 3 cut(s) 1265, 1324, 2106
BssECI CCNNGG 7 cut(s) 257, 745, 778, 1365, 1407, 2070, 2090
BssT1I CCWWGG 3 cut(s) 257, 745, 1365
Bst2UI CCWGG 3 cut(s) 571, 624, 854
Bst4CI ACNGT 3 cut(s) 427, 1900, 2091
Bst6I CTCTTC 6 cut(s) 160, 569, 645, 1138, 1371, 2125
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 1973
BstC8I GCNNGC 2 cut(s) 333, 1809
BstDEI CTNAG 9 cut(s) 139, 495, 538, 731, 995, 1446, 1478, 1559, 1568
BstDSI CCRYGG 1 cut(s) 2090
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 4 cut(s) 39, 233, 271, 2185
BstMAI GTCTC 6 cut(s) 157, 647, 788, 985, 1010, 1536
BstMCI CGRYCG 1 cut(s) 1222
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 3 cut(s) 571, 624, 854
BstNSI RCATGY 1 cut(s) 1361
BstSCI CCNGG 6 cut(s) 569, 622, 852, 1662, 2069, 2070
BstSFI CTRYAG 3 cut(s) 290, 1054, 1459
BstV1I GCAGC 2 cut(s) 1062, 1449
BstV2I GAAGAC 3 cut(s) 102, 407, 2118
BstX2I RGATCY 7 cut(s) 184, 506, 820, 877, 2074, 2081, 2158
BstYI RGATCY 7 cut(s) 184, 506, 820, 877, 2074, 2081, 2158
BsuI GTATCC 2 cut(s) 46, 1279
BsuRI GGCC 1 cut(s) 1811
BtgI CCRYGG 1 cut(s) 2090
BtsCI GGATG 4 cut(s) 39, 233, 271, 2185
BtsI GCAGTG 1 cut(s) 1440
BtsIMutI CAGTG 2 cut(s) 1440, 1555
BveI ACCTGC 1 cut(s) 1968
Cac8I GCNNGC 2 cut(s) 333, 1809
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 5 cut(s) 4, 626, 1193, 1251, 1907
Cfr9I CCCGGG 1 cut(s) 2070
CseI GACGC 1 cut(s) 230
CsiI ACCWGGT 2 cut(s) 622, 852
Csp6I GTAC 2 cut(s) 499, 1708
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 7 cut(s) 89, 443, 647, 1166, 1190, 1343, 1358
CviQI GTAC 2 cut(s) 499, 1708
DdeI CTNAG 9 cut(s) 139, 495, 538, 731, 995, 1446, 1478, 1559, 1568
DraIII CACNNNGTG 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 1809
Eam1104I CTCTTC 6 cut(s) 160, 569, 645, 1138, 1371, 2125
EarI CTCTTC 6 cut(s) 160, 569, 645, 1138, 1371, 2125
Ecl136II GAGCTC 2 cut(s) 138, 947
Eco130I CCWWGG 3 cut(s) 257, 745, 1365
Eco24I GRGCYC 2 cut(s) 140, 949
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 5 cut(s) 4, 626, 1193, 1251, 1907
Eco53kI GAGCTC 2 cut(s) 138, 947
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 2 cut(s) 1589, 2070
EcoICRI GAGCTC 2 cut(s) 138, 947
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 1251
EcoRI GAATTC 2 cut(s) 565, 953
EcoRII CCWGG 3 cut(s) 569, 622, 852
EcoT14I CCWWGG 3 cut(s) 257, 745, 1365
EcoT22I ATGCAT 1 cut(s) 1615
EcoT38I GRGCYC 2 cut(s) 140, 949
ErhI CCWWGG 3 cut(s) 257, 745, 1365
FaeI CATG 7 cut(s) 92, 446, 650, 1169, 1193, 1346, 1361
FalI AAGNNNNNCTT 4 cut(s) 693, 725, 1506, 1538
FaqI GGGAC 2 cut(s) 1216, 1757
FatI CATG 7 cut(s) 88, 442, 646, 1165, 1189, 1342, 1357
FbaI TGATCA 1 cut(s) 1816
Fnu4HI GCNGC 2 cut(s) 1051, 1438
FokI GGATG 4 cut(s) 46, 240, 258, 2192
FriOI GRGCYC 2 cut(s) 140, 949
Fsp4HI GCNGC 2 cut(s) 1051, 1438
FspBI CTAG 7 cut(s) 332, 873, 972, 1070, 1236, 1419, 1655
GluI GCNGC 2 cut(s) 1051, 1438
GsuI CTGGAG 3 cut(s) 157, 933, 1319
HaeIII GGCC 1 cut(s) 1811
HapII CCGG 4 cut(s) 1272, 1604, 1664, 2071
HgaI GACGC 1 cut(s) 230
Hin1II CATG 7 cut(s) 92, 446, 650, 1169, 1193, 1346, 1361
HincII GTYRAC 1 cut(s) 1948
HindII GTYRAC 1 cut(s) 1948
HindIII AAGCTT 1 cut(s) 1289
HinfI GANTC 9 cut(s) 191, 905, 978, 1379, 1582, 1592, 1637, 1793, 1991
HpaII CCGG 4 cut(s) 1272, 1604, 1664, 2071
HphI GGTGA 5 cut(s) 335, 730, 1165, 1396, 2079
Hpy166II GTNNAC 7 cut(s) 501, 583, 740, 809, 1565, 1675, 1948
Hpy8I GTNNAC 7 cut(s) 501, 583, 740, 809, 1565, 1675, 1948
Hpy99I CGWCG 1 cut(s) 1208
HpyAV CCTTC 6 cut(s) 112, 126, 715, 745, 1566, 1843
HpyCH4III ACNGT 3 cut(s) 427, 1900, 2091
HpyCH4IV ACGT 2 cut(s) 1748, 1972
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 9 cut(s) 139, 495, 538, 731, 995, 1446, 1478, 1559, 1568
HpySE526I ACGT 2 cut(s) 1748, 1972
Hsp92II CATG 7 cut(s) 92, 446, 650, 1169, 1193, 1346, 1361
Kpn2I TCCGGA 1 cut(s) 1271
Ksp22I TGATCA 1 cut(s) 1816
LmnI GCTCC 4 cut(s) 135, 601, 944, 952
Lsp1109I GCAGC 2 cut(s) 1062, 1449
LweI GCATC 3 cut(s) 1436, 1600, 1622
MabI ACCWGGT 2 cut(s) 622, 852
MaeI CTAG 7 cut(s) 332, 873, 972, 1070, 1236, 1419, 1655
MaeII ACGT 2 cut(s) 1748, 1972
MaeIII GTNAC 4 cut(s) 459, 839, 868, 2164
MfeI CAATTG 2 cut(s) 75, 393
MflI RGATCY 7 cut(s) 184, 506, 820, 877, 2074, 2081, 2158
MhlI GDGCHC 4 cut(s) 140, 345, 949, 1327
MlsI TGGCCA 1 cut(s) 1811
MluNI TGGCCA 1 cut(s) 1811
MlyI GAGTC 2 cut(s) 1388, 1601
MmeI TCCRAC 3 cut(s) 183, 1968, 2076
Mox20I TGGCCA 1 cut(s) 1811
Mph1103I ATGCAT 1 cut(s) 1615
MroI TCCGGA 1 cut(s) 1271
MroXI GAANNNNTTC 2 cut(s) 705, 1003
MscI TGGCCA 1 cut(s) 1811
MseI TTAA 7 cut(s) 164, 617, 1026, 1040, 1091, 1916, 2118
MslI CAYNNNNRTG 2 cut(s) 1409, 1432
Msp20I TGGCCA 1 cut(s) 1811
MspA1I CMGCKG 1 cut(s) 1469
MspI CCGG 4 cut(s) 1272, 1604, 1664, 2071
MspR9I CCNGG 6 cut(s) 571, 624, 854, 1664, 2071, 2072
MunI CAATTG 2 cut(s) 75, 393
Mva1269I GAATGC 1 cut(s) 1535
MvaI CCWGG 3 cut(s) 571, 624, 854
MwoI GCNNNNNNNGC 1 cut(s) 371
NciI CCSGG 3 cut(s) 1664, 2071, 2072
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 7 cut(s) 92, 446, 650, 1169, 1193, 1346, 1361
NlaIV GGNNCC 3 cut(s) 822, 1413, 2083
NmuCI GTSAC 3 cut(s) 459, 839, 868
NsiI ATGCAT 1 cut(s) 1615
NspI RCATGY 1 cut(s) 1361
OliI CACNNNNGTG 1 cut(s) 1409
PaeR7I CTCGAG 1 cut(s) 1589
PciI ACATGT 1 cut(s) 1357
PctI GAATGC 1 cut(s) 1535
PdmI GAANNNNTTC 2 cut(s) 705, 1003
PfeI GAWTC 7 cut(s) 191, 905, 978, 1582, 1637, 1793, 1991
PfoI TCCNGGA 1 cut(s) 569
PkrI GCNGC 2 cut(s) 1052, 1439
Ple19I CGATCG 1 cut(s) 1222
PleI GAGTC 2 cut(s) 1387, 1600
PpsI GAGTC 2 cut(s) 1387, 1600
Ppu21I YACGTR 1 cut(s) 1973
PpuMI RGGWCCY 1 cut(s) 1251
PscI ACATGT 1 cut(s) 1357
PshBI ATTAAT 1 cut(s) 2118
PsiI TTATAA 1 cut(s) 1800
Psp124BI GAGCTC 2 cut(s) 140, 949
Psp5II RGGWCCY 1 cut(s) 1251
Psp6I CCWGG 3 cut(s) 569, 622, 852
PspGI CCWGG 3 cut(s) 569, 622, 852
PspN4I GGNNCC 3 cut(s) 822, 1413, 2083
PspPI GGNCC 5 cut(s) 4, 626, 1193, 1251, 1907
PspPPI RGGWCCY 1 cut(s) 1251
PspXI VCTCGAGB 1 cut(s) 1589
PstI CTGCAG 1 cut(s) 1463
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 7 cut(s) 184, 506, 820, 877, 2074, 2081, 2158
PvuI CGATCG 1 cut(s) 1222
PvuII CAGCTG 1 cut(s) 1469
RsaI GTAC 2 cut(s) 500, 1709
RsaNI GTAC 2 cut(s) 499, 1708
RseI CAYNNNNRTG 2 cut(s) 1409, 1432
SacI GAGCTC 2 cut(s) 140, 949
SaqAI TTAA 7 cut(s) 164, 617, 1026, 1040, 1091, 1916, 2118
SatI GCNGC 2 cut(s) 1051, 1438
Sau96I GGNCC 5 cut(s) 4, 626, 1193, 1251, 1907
SchI GAGTC 2 cut(s) 1388, 1601
ScrFI CCNGG 6 cut(s) 571, 624, 854, 1664, 2071, 2072
SduI GDGCHC 4 cut(s) 140, 345, 949, 1327
SexAI ACCWGGT 2 cut(s) 622, 852
SfaNI GCATC 3 cut(s) 1436, 1600, 1622
SfcI CTRYAG 3 cut(s) 290, 1054, 1459
Sfr274I CTCGAG 1 cut(s) 1589
SinI GGWCC 5 cut(s) 4, 626, 1193, 1251, 1907
SlaI CTCGAG 1 cut(s) 1589
SmaI CCCGGG 1 cut(s) 2072
SmiMI CAYNNNNRTG 2 cut(s) 1409, 1432
SmlI CTYRAG 4 cut(s) 276, 336, 710, 1589
SmoI CTYRAG 4 cut(s) 276, 336, 710, 1589
SsiI CCGC 1 cut(s) 1306
SspMI CTAG 7 cut(s) 332, 873, 972, 1070, 1236, 1419, 1655
SstI GAGCTC 2 cut(s) 140, 949
StyD4I CCNGG 6 cut(s) 569, 622, 852, 1662, 2069, 2070
StyI CCWWGG 3 cut(s) 257, 745, 1365
TaaI ACNGT 3 cut(s) 427, 1900, 2091
TaiI ACGT 2 cut(s) 1751, 1975
TaqI TCGA 8 cut(s) 303, 727, 898, 1218, 1222, 1590, 1736, 2055
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 7 cut(s) 191, 905, 978, 1582, 1637, 1793, 1991
Tru1I TTAA 7 cut(s) 164, 617, 1026, 1040, 1091, 1916, 2118
Tru9I TTAA 7 cut(s) 164, 617, 1026, 1040, 1091, 1916, 2118
TscAI CASTG 2 cut(s) 1447, 1555
TseFI GTSAC 3 cut(s) 459, 839, 868
TseI GCWGC 2 cut(s) 1050, 1437
Tsp45I GTSAC 3 cut(s) 459, 839, 868
TspGWI ACGGA 2 cut(s) 65, 1762
TspMI CCCGGG 1 cut(s) 2070
TspRI CASTG 2 cut(s) 1447, 1555
VpaK11BI GGWCC 5 cut(s) 4, 626, 1193, 1251, 1907
VspI ATTAAT 1 cut(s) 2118
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 6 cut(s) 166, 565, 889, 930, 953, 1928
XceI RCATGY 1 cut(s) 1361
XcmI CCANNNNNNNNNTGG 1 cut(s) 1316
XhoI CTCGAG 1 cut(s) 1589
XmaI CCCGGG 1 cut(s) 2070
XmnI GAANNNNTTC 2 cut(s) 705, 1003
XspI CTAG 7 cut(s) 332, 873, 972, 1070, 1236, 1419, 1655
Zsp2I ATGCAT 1 cut(s) 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.