Rorug02G0064500

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005501
Physical Location & Seq
Reverse (-)
5076362 .. 5079354
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0064500.1

Sequence Viewer

Length: 1149 bp
ATGCCAACATTATTCCAAAGCATTTTCTATGCTACTCTTCTTCTTCTTGTCCTAAACTCAACACAGACCTTATGTCACACCAAGGCAATTCGGCCGGGAAACTCCGCCGGAAAAGTACACCTGGCCAAGAACATGACCCGAGCCCAATTCTCGGAGCAACAATTCATGAAGTGGGTCAAGTTTGTTGGGAGACTCAAACACTCGGTTTATAAGAACGCGAAAAACAAGCTCTTCCCCTCTTACACACTCAATGTGGCTAAGAACCCTTCACGGGGAGACTTCACGAAAATTCAGGACGCCATTGATTCTCTTCCGTTCATCAATCTCGTCAGAGTCGTCATCAAGGTCCATGCAGGTGTCTACAAGGAAAAGGTGAATATACCGCCATTGAAATCGTTTATAACCATAGAAGGAGCAGGGGCGGACAAGACAATAGTTCAATGGGGAGACACAGCTCAAACACCTTCAGGTCCGAAAAAACAACCGATGGGGACTTATAATTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATTGCCAGGAACATTACTTTCAAGAACACCACGCCGGTACCGGCTCCAGGAGCAATCGGAAAGCAGGCAGTGGCGTTTAGAATATCGGGAGATACAGCAGCCTTCTTAGGGTGTAGATTTTTGGGAGCACAGGACACATTGTACGACCATTTGGGAAGGCATTATTACAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATCTTCGGAAATGGTCTCTCTCTGTTTGAGGGATGTCACGTGCATGCAATAGCAACAAGCATAGGGGCATTAACGGCGCAAGGGAGGAGCAGTTTACTGGAGGAGACGGGGTTCTCGTTTGTCAACTGTAAGGTCACGGGTTCAGGAGCTCTCTATCTTGGAAGGGCTTGGGGACCTTTTTCTAGGGTAGTCTTTGCCTACACTTATATGGACAACATTATCATGCCCAAGGGCTGGTACAACTGGGGTGACCCTAATCGTGAAATGACTGTGTTTTATGGGCAATACAAGTGCACAGGACCTGGGGCTCAGTATGCAGGGAGGGTATCGTGGTCTAGGGAACTCACTGATGAGGAAGCAAAGCCTTTTATTTCCCTTACCTTCATAGATGGGTCTGAGTGGCTCAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 NTPase_1 VARLMGL

Protein Analysis

382

Amino Acids

42.34

Weight (kDa)

9.45

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 85 - 376 9e-74 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 210, 401, 498
AarI CACCTGC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 344
Acc65I GGTACC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 969
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 218
AciI CCGC 3 cut(s) 105, 383, 422
AcoI YGGCCR 2 cut(s) 92, 123
AcsI RAATTY 3 cut(s) 288, 520, 1142
AcuI CTGAAG 1 cut(s) 450
AcvI CACGTG 1 cut(s) 775
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 4 cut(s) 117, 573, 677, 974
AfiI CCNNNNNNNGG 6 cut(s) 151, 271, 272, 581, 642, 969
AgsI TTSAA 4 cut(s) 391, 440, 556, 719
AhdI GACNNNNNGTC 1 cut(s) 72
AjnI CCWGG 4 cut(s) 120, 539, 580, 1036
AloI GAACNNNNNNTCC 2 cut(s) 830, 862
AluBI AGCT 3 cut(s) 229, 455, 884
AluI AGCT 3 cut(s) 229, 455, 884
Alw21I GWGCWC 3 cut(s) 664, 886, 1031
Alw26I GTCTC 5 cut(s) 184, 270, 441, 755, 833
Alw44I GTGCAC 1 cut(s) 1027
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 2 cut(s) 92, 123
ApaLI GTGCAC 1 cut(s) 1027
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 3 cut(s) 288, 520, 1142
Asp718I GGTACC 1 cut(s) 571
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 4 cut(s) 346, 470, 908, 1034
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 3 cut(s) 385, 516, 995
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 4 cut(s) 346, 470, 908, 1034
BaeGI GKGCMC 1 cut(s) 1031
BaeI ACNNNNGTAYC 2 cut(s) 555, 588
BalI TGGCCA 1 cut(s) 125
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 3 cut(s) 145, 886, 1045
BbrPI CACGTG 1 cut(s) 775
Bbv12I GWGCWC 3 cut(s) 664, 886, 1031
BbvI GCAGC 1 cut(s) 644
BccI CCATC 2 cut(s) 481, 1118
BceAI ACGGC 1 cut(s) 825
BciT130I CCWGG 4 cut(s) 122, 541, 582, 1038
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 5 cut(s) 184, 270, 441, 755, 833
BfaI CTAG 2 cut(s) 918, 1071
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme1390I CCNGG 5 cut(s) 96, 122, 541, 582, 1038
Bme18I GGWCC 4 cut(s) 346, 470, 908, 1034
BmeRI GACNNNNNGTC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 4 cut(s) 346, 470, 908, 1034
BmiI GGNNCC 3 cut(s) 573, 579, 909
BmrFI CCNGG 5 cut(s) 96, 122, 541, 582, 1038
BmrI ACTGGG 1 cut(s) 988
BmuI ACTGGG 1 cut(s) 988
BpmI CTGGAG 2 cut(s) 564, 854
BpuMI CCSGG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 775
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 81, 963, 1037
BsaXI ACNNNNNCTCC 4 cut(s) 811, 830, 841, 860
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 271, 272, 581, 642, 969
Bse118I RCCGGY 2 cut(s) 568, 574
Bse1I ACTGG 2 cut(s) 837, 983
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 4 cut(s) 122, 541, 582, 1038
BseDI CCNNGG 3 cut(s) 81, 963, 1037
BseGI GGATG 1 cut(s) 773
BseLI CCNNNNNNNGG 6 cut(s) 151, 271, 272, 581, 642, 969
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 1058, 1122
BseNI ACTGG 2 cut(s) 837, 983
BseRI GAGGAG 2 cut(s) 835, 851
BseSI GKGCMC 1 cut(s) 1031
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 94, 125
BshNI GGYRCC 1 cut(s) 571
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 3 cut(s) 664, 886, 1031
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 4 cut(s) 95, 108, 569, 575
BslFI GGGAC 2 cut(s) 505, 921
BslI CCNNNNNNNGG 6 cut(s) 151, 271, 272, 581, 642, 969
BsmAI GTCTC 5 cut(s) 184, 270, 441, 755, 833
BsmBI CGTCTC 1 cut(s) 833
BsmFI GGGAC 2 cut(s) 505, 921
BsnI GGCC 2 cut(s) 94, 125
Bso31I GGTCTC 1 cut(s) 755
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 5 cut(s) 145, 664, 886, 1031, 1045
BspACI CCGC 3 cut(s) 105, 383, 422
BspANI GGCC 2 cut(s) 94, 125
BspCNI CTCAG 2 cut(s) 1057, 1123
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 573, 579, 909
BspMI ACCTGC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 2 cut(s) 568, 574
BsrI ACTGG 2 cut(s) 837, 983
BssAI RCCGGY 2 cut(s) 568, 574
BssECI CCNNGG 3 cut(s) 81, 963, 1037
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 81, 963
Bst2UI CCWGG 4 cut(s) 122, 541, 582, 1038
Bst4CI ACNGT 2 cut(s) 863, 1006
Bst6I CTCTTC 3 cut(s) 42, 236, 315
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 775
BstC8I GCNNGC 2 cut(s) 600, 780
BstDEI CTNAG 4 cut(s) 258, 640, 1044, 1131
BstEII GGTNACC 1 cut(s) 983
BstF5I GGATG 1 cut(s) 773
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 814
BstMAI GTCTC 5 cut(s) 184, 270, 441, 755, 833
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 4 cut(s) 512, 584, 809, 1049
BstNI CCWGG 4 cut(s) 122, 541, 582, 1038
BstNSI RCATGY 1 cut(s) 782
BstPI GGTNACC 1 cut(s) 983
BstSCI CCNGG 5 cut(s) 94, 120, 539, 580, 1036
BstSLI GKGCMC 1 cut(s) 1031
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 644
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 94, 125
BtsCI GGATG 1 cut(s) 773
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 609, 1080
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 600, 780
CaiI CAGNNNCTG 1 cut(s) 1037
CciI TCATGA 1 cut(s) 165
CfoI GCGC 1 cut(s) 814
Cfr10I RCCGGY 2 cut(s) 568, 574
Cfr13I GGNCC 4 cut(s) 346, 470, 908, 1034
CseI GACGC 1 cut(s) 305
Csp6I GTAC 4 cut(s) 116, 572, 676, 973
CviAII CATG 5 cut(s) 133, 166, 350, 779, 958
CviQI GTAC 4 cut(s) 116, 572, 676, 973
DdeI CTNAG 4 cut(s) 258, 640, 1044, 1131
DriI GACNNNNNGTC 1 cut(s) 72
EaeI YGGCCR 2 cut(s) 92, 123
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 3 cut(s) 42, 236, 315
Eam1105I GACNNNNNGTC 1 cut(s) 72
EarI CTCTTC 3 cut(s) 42, 236, 315
EciI GGCGGA 2 cut(s) 94, 437
Ecl136II GAGCTC 1 cut(s) 884
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 81, 963
Eco24I GRGCYC 3 cut(s) 145, 886, 1045
Eco31I GGTCTC 1 cut(s) 755
Eco47I GGWCC 4 cut(s) 346, 470, 908, 1034
Eco52I CGGCCG 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 450
Eco72I CACGTG 1 cut(s) 775
Eco88I CYCGRG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 983
EcoICRI GAGCTC 1 cut(s) 884
EcoO109I RGGNCCY 2 cut(s) 908, 1034
EcoO65I GGTNACC 1 cut(s) 983
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 4 cut(s) 120, 539, 580, 1036
EcoT14I CCWWGG 2 cut(s) 81, 963
EcoT38I GRGCYC 3 cut(s) 145, 886, 1045
ErhI CCWWGG 2 cut(s) 81, 963
Esp3I CGTCTC 1 cut(s) 833
FaeI CATG 5 cut(s) 136, 169, 353, 782, 961
FaqI GGGAC 2 cut(s) 505, 921
FatI CATG 5 cut(s) 132, 165, 349, 778, 957
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 1 cut(s) 780
FriOI GRGCYC 3 cut(s) 145, 886, 1045
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 2 cut(s) 918, 1071
GlaI GCGC 1 cut(s) 813
GluI GCNGC 1 cut(s) 633
GsuI CTGGAG 2 cut(s) 564, 854
HaeIII GGCC 2 cut(s) 94, 125
HapII CCGG 4 cut(s) 95, 108, 569, 575
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 814
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 5 cut(s) 136, 169, 353, 782, 961
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 3 cut(s) 192, 305, 333
HpaII CCGG 4 cut(s) 95, 108, 569, 575
HphI GGTGA 3 cut(s) 385, 516, 995
Hpy166II GTNNAC 5 cut(s) 118, 361, 830, 859, 1029
Hpy188I TCNGA 7 cut(s) 154, 332, 474, 593, 743, 1132, 1148
Hpy188III TCNNGA 7 cut(s) 166, 283, 293, 556, 621, 879, 995
Hpy8I GTNNAC 5 cut(s) 118, 361, 830, 859, 1029
HpyAV CCTTC 8 cut(s) 276, 404, 474, 646, 684, 713, 891, 1126
HpyCH4III ACNGT 2 cut(s) 863, 1006
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 6 cut(s) 353, 506, 778, 782, 1029, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 584, 809, 1049
HpyF3I CTNAG 4 cut(s) 258, 640, 1044, 1131
HpySE526I ACGT 1 cut(s) 774
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 5 cut(s) 136, 169, 353, 782, 961
HspAI GCGC 1 cut(s) 812
KpnI GGTACC 1 cut(s) 575
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 7 cut(s) 154, 413, 583, 584, 659, 822, 881
Lsp1109I GCAGC 1 cut(s) 644
MaeI CTAG 2 cut(s) 918, 1071
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 5 cut(s) 74, 710, 770, 868, 983
MboII GAAGA 6 cut(s) 29, 32, 35, 223, 302, 730
MhlI GDGCHC 5 cut(s) 145, 664, 886, 1031, 1045
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 7 cut(s) 87, 146, 161, 288, 499, 520, 1142
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 2 cut(s) 186, 342
MnlI CCTC 6 cut(s) 247, 757, 813, 829, 1050, 1081
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 1 cut(s) 806
MslI CAYNNNNRTG 4 cut(s) 354, 777, 941, 956
Msp20I TGGCCA 1 cut(s) 125
MspI CCGG 4 cut(s) 95, 108, 569, 575
MspR9I CCNGG 5 cut(s) 96, 122, 541, 582, 1038
MvaI CCWGG 4 cut(s) 122, 541, 582, 1038
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 512, 584, 809, 1049
NciI CCSGG 1 cut(s) 96
NlaIII CATG 5 cut(s) 136, 169, 353, 782, 961
NlaIV GGNNCC 3 cut(s) 573, 579, 909
NmuCI GTSAC 4 cut(s) 74, 770, 868, 983
NspI RCATGY 1 cut(s) 782
PaeI GCATGC 1 cut(s) 782
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 848
PfeI GAWTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 969
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 2 cut(s) 186, 341
PmaCI CACGTG 1 cut(s) 775
PmlI CACGTG 1 cut(s) 775
PpsI GAGTC 2 cut(s) 186, 341
Ppu21I YACGTR 1 cut(s) 775
PpuMI RGGWCCY 2 cut(s) 908, 1034
PsiI TTATAA 3 cut(s) 210, 401, 498
Psp124BI GAGCTC 1 cut(s) 886
Psp5II RGGWCCY 2 cut(s) 908, 1034
Psp6I CCWGG 4 cut(s) 120, 539, 580, 1036
PspCI CACGTG 1 cut(s) 775
PspEI GGTNACC 1 cut(s) 983
PspGI CCWGG 4 cut(s) 120, 539, 580, 1036
PspN4I GGNNCC 3 cut(s) 573, 579, 909
PspPI GGNCC 4 cut(s) 346, 470, 908, 1034
PspPPI RGGWCCY 2 cut(s) 908, 1034
PstNI CAGNNNCTG 1 cut(s) 1037
RsaI GTAC 4 cut(s) 117, 573, 677, 974
RsaNI GTAC 4 cut(s) 116, 572, 676, 973
RseI CAYNNNNRTG 4 cut(s) 354, 777, 941, 956
SacI GAGCTC 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 806
SatI GCNGC 1 cut(s) 633
Sau96I GGNCC 4 cut(s) 346, 470, 908, 1034
SchI GAGTC 2 cut(s) 186, 342
ScrFI CCNGG 5 cut(s) 96, 122, 541, 582, 1038
SduI GDGCHC 5 cut(s) 145, 664, 886, 1031, 1045
SinI GGWCC 4 cut(s) 346, 470, 908, 1034
SmiMI CAYNNNNRTG 4 cut(s) 354, 777, 941, 956
SphI GCATGC 1 cut(s) 782
Sse9I AATT 7 cut(s) 87, 146, 161, 288, 499, 520, 1142
SsiI CCGC 3 cut(s) 105, 383, 422
SspMI CTAG 2 cut(s) 918, 1071
SstI GAGCTC 1 cut(s) 886
StyD4I CCNGG 5 cut(s) 94, 120, 539, 580, 1036
StyI CCWWGG 2 cut(s) 81, 963
TaaI ACNGT 2 cut(s) 863, 1006
TaiI ACGT 1 cut(s) 777
TasI AATT 7 cut(s) 87, 146, 161, 288, 499, 520, 1142
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 806
Tru9I TTAA 1 cut(s) 806
TscAI CASTG 2 cut(s) 609, 1087
TseFI GTSAC 4 cut(s) 74, 770, 868, 983
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 4 cut(s) 74, 770, 868, 983
TspDTI ATGAA 6 cut(s) 154, 182, 307, 523, 724, 1108
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 609, 1087
Van91I CCANNNNNTGG 1 cut(s) 969
VneI GTGCAC 1 cut(s) 1027
VpaK11BI GGWCC 4 cut(s) 346, 470, 908, 1034
XapI RAATTY 3 cut(s) 288, 520, 1142
XceI RCATGY 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 918, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.