Domain of unknown function (DUF4378)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17550 AT2G17550 |
| fragaria_vesca | FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 FvH4_1g10290 |
| malus_domestica | MD02G1115000.v1.1 MD15G1231000.v1.1 |
| prunus_persica | Prupe.7G183200_v2.0.a1 Prupe.7G183200_v2.0.a1 |
| pyrus_communis | pycom02g08990 pycom15g20580 |
| rosa_chinensis | RchiOBHm_Chr2g0097131 |
| rosa_laevigata | RLG00000016705 |
| rosa_multiflora | Rmu_sc0001182.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00144950 |
| rosa_rugosa | Rorug02G0064400 Rorug02G0064500 Rorug02G0064600 |
| rosa_samantha | Rh2AG111600 Rh2BG113600 Rh2CG115900 Rh2DG114900 |
| rosa_wichuraiana | Rw2G008680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 595 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1154 |
| AccBSI | CCGCTC | 1 cut(s) | 543 |
| AccII | CGCG | 1 cut(s) | 1053 |
| AccIII | TCCGGA | 2 cut(s) | 1113, 1277 |
| AciI | CCGC | 4 cut(s) | 276, 543, 812, 1248 |
| AclWI | GGATC | 6 cut(s) | 101, 220, 904, 998, 1263, 1270 |
| AcoI | YGGCCR | 2 cut(s) | 990, 1245 |
| AcsI | RAATTY | 3 cut(s) | 29, 54, 1353 |
| AcuI | CTGAAG | 1 cut(s) | 993 |
| AdeI | CACNNNGTG | 1 cut(s) | 1045 |
| AfaI | GTAC | 2 cut(s) | 285, 890 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 287, 850, 1154, 1277 |
| AgeI | ACCGGT | 1 cut(s) | 335 |
| AgsI | TTSAA | 6 cut(s) | 10, 84, 766, 1063, 1077, 1171 |
| AjiI | CACGTC | 1 cut(s) | 506 |
| AleI | CACNNNNGTG | 1 cut(s) | 593 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1329, 1361 |
| AluBI | AGCT | 3 cut(s) | 751, 1070, 1326 |
| AluI | AGCT | 3 cut(s) | 751, 1070, 1326 |
| Alw21I | GWGCWC | 1 cut(s) | 343 |
| Alw26I | GTCTC | 3 cut(s) | 61, 460, 568 |
| AlwI | GGATC | 6 cut(s) | 101, 220, 904, 998, 1263, 1270 |
| Ama87I | CYCGRG | 3 cut(s) | 630, 773, 1251 |
| Aor13HI | TCCGGA | 2 cut(s) | 1113, 1277 |
| AoxI | GGCC | 4 cut(s) | 545, 647, 990, 1245 |
| ApeKI | GCWGC | 2 cut(s) | 621, 1141 |
| ApoI | RAATTY | 3 cut(s) | 29, 54, 1353 |
| AseI | ATTAAT | 1 cut(s) | 1376 |
| AsiGI | ACCGGT | 1 cut(s) | 335 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 79 |
| AspLEI | GCGC | 1 cut(s) | 1141 |
| AspS9I | GGNCC | 7 cut(s) | 267, 319, 371, 545, 1088, 1268, 1275 |
| AsuC2I | CCSGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| AsuHPI | GGTGA | 1 cut(s) | 580 |
| AsuII | TTCGAA | 1 cut(s) | 960 |
| AvaI | CYCGRG | 3 cut(s) | 630, 773, 1251 |
| AvaII | GGWCC | 6 cut(s) | 267, 319, 371, 1088, 1268, 1275 |
| AxyI | CCTNAGG | 1 cut(s) | 789 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1203, 1236 |
| BalI | TGGCCA | 1 cut(s) | 992 |
| BanI | GGYRCC | 1 cut(s) | 595 |
| BauI | CACGAG | 1 cut(s) | 693 |
| Bbv12I | GWGCWC | 1 cut(s) | 343 |
| BbvI | GCAGC | 2 cut(s) | 633, 1128 |
| BccI | CCATC | 5 cut(s) | 695, 887, 915, 1024, 1279 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1173, 1207 |
| BciVI | GTATCC | 2 cut(s) | 531, 1231 |
| BclI | TGATCA | 2 cut(s) | 1125, 1329 |
| BcnI | CCSGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| BcoDI | GTCTC | 3 cut(s) | 61, 460, 568 |
| BfaI | CTAG | 4 cut(s) | 132, 252, 603, 831 |
| BfuI | GTATCC | 2 cut(s) | 531, 1231 |
| BglII | AGATCT | 2 cut(s) | 128, 1339 |
| BisI | GCNGC | 3 cut(s) | 622, 1142, 1248 |
| BlsI | GCNGC | 3 cut(s) | 623, 1143, 1249 |
| Bme1390I | CCNGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| Bme18I | GGWCC | 6 cut(s) | 267, 319, 371, 1088, 1268, 1275 |
| BmeT110I | CYCGRG | 3 cut(s) | 630, 773, 1251 |
| BmgBI | CACGTC | 1 cut(s) | 506 |
| BmgT120I | GGNCC | 7 cut(s) | 267, 319, 371, 545, 1088, 1268, 1275 |
| BmiI | GGNNCC | 2 cut(s) | 22, 597 |
| BmrFI | CCNGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| BmrI | ACTGGG | 1 cut(s) | 275 |
| BmsI | GCATC | 2 cut(s) | 23, 620 |
| BmuI | ACTGGG | 1 cut(s) | 275 |
| BoxI | GACNNNNGTC | 1 cut(s) | 376 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 673, 705 |
| BpmI | CTGGAG | 3 cut(s) | 335, 588, 664 |
| Bpu10I | CCTNAGC | 1 cut(s) | 458 |
| Bpu14I | TTCGAA | 1 cut(s) | 960 |
| BpuMI | CCSGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| BsaAI | YACGTR | 1 cut(s) | 1154 |
| BsaJI | CCNNGG | 5 cut(s) | 24, 381, 591, 1251, 1271 |
| BsaWI | WCCGGW | 3 cut(s) | 335, 1113, 1277 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 213, 243, 1329, 1359 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 287, 850, 1154, 1277 |
| Bse118I | RCCGGY | 1 cut(s) | 335 |
| Bse1I | ACTGG | 1 cut(s) | 281 |
| Bse21I | CCTNAGG | 1 cut(s) | 789 |
| BseAI | TCCGGA | 2 cut(s) | 1113, 1277 |
| BseDI | CCNNGG | 5 cut(s) | 24, 381, 591, 1251, 1271 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 287, 850, 1154, 1277 |
| BseMII | CTCAG | 4 cut(s) | 62, 734, 780, 966 |
| BseNI | ACTGG | 1 cut(s) | 281 |
| BseRI | GAGGAG | 1 cut(s) | 1123 |
| BseXI | GCAGC | 2 cut(s) | 633, 1128 |
| BseYI | CCCAGC | 1 cut(s) | 844 |
| Bsh1236I | CGCG | 1 cut(s) | 1053 |
| BshFI | GGCC | 4 cut(s) | 547, 649, 992, 1247 |
| BshNI | GGYRCC | 1 cut(s) | 595 |
| BshTI | ACCGGT | 1 cut(s) | 335 |
| BsiHKAI | GWGCWC | 1 cut(s) | 343 |
| BsiHKCI | CYCGRG | 3 cut(s) | 630, 773, 1251 |
| BsiSI | CCGG | 7 cut(s) | 26, 123, 288, 336, 1114, 1252, 1278 |
| BslFI | GGGAC | 4 cut(s) | 232, 740, 938, 1323 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 287, 850, 1154, 1277 |
| BsmAI | GTCTC | 3 cut(s) | 61, 460, 568 |
| BsmFI | GGGAC | 4 cut(s) | 232, 740, 938, 1323 |
| BsmI | GAATGC | 1 cut(s) | 1202 |
| BsnI | GGCC | 4 cut(s) | 547, 649, 992, 1247 |
| BsoBI | CYCGRG | 3 cut(s) | 630, 773, 1251 |
| Bsp119I | TTCGAA | 1 cut(s) | 960 |
| Bsp1286I | GDGCHC | 1 cut(s) | 343 |
| Bsp13I | TCCGGA | 2 cut(s) | 1113, 1277 |
| Bsp19I | CCATGG | 1 cut(s) | 381 |
| BspACI | CCGC | 4 cut(s) | 276, 543, 812, 1248 |
| BspANI | GGCC | 4 cut(s) | 547, 649, 992, 1247 |
| BspCNI | CTCAG | 4 cut(s) | 63, 735, 781, 965 |
| BspEI | TCCGGA | 2 cut(s) | 1113, 1277 |
| BspFNI | CGCG | 1 cut(s) | 1053 |
| BspHI | TCATGA | 2 cut(s) | 103, 537 |
| BspLI | GGNNCC | 2 cut(s) | 22, 597 |
| BspPI | GGATC | 6 cut(s) | 101, 220, 904, 998, 1263, 1270 |
| BspT104I | TTCGAA | 1 cut(s) | 960 |
| BspT107I | GGYRCC | 1 cut(s) | 595 |
| BsrBI | CCGCTC | 1 cut(s) | 543 |
| BsrFI | RCCGGY | 1 cut(s) | 335 |
| BsrI | ACTGG | 1 cut(s) | 281 |
| BssAI | RCCGGY | 1 cut(s) | 335 |
| BssECI | CCNNGG | 5 cut(s) | 24, 381, 591, 1251, 1271 |
| BssSI | CACGAG | 1 cut(s) | 693 |
| BssT1I | CCWWGG | 2 cut(s) | 381, 1271 |
| Bst2BI | CACGAG | 1 cut(s) | 693 |
| Bst4CI | ACNGT | 5 cut(s) | 323, 449, 519, 553, 1081 |
| Bst6I | CTCTTC | 1 cut(s) | 630 |
| BstBAI | YACGTR | 1 cut(s) | 1154 |
| BstBI | TTCGAA | 1 cut(s) | 960 |
| BstC8I | GCNNGC | 1 cut(s) | 545 |
| BstDEI | CTNAG | 6 cut(s) | 71, 458, 662, 743, 789, 952 |
| BstDSI | CCRYGG | 1 cut(s) | 381 |
| BstFNI | CGCG | 1 cut(s) | 1053 |
| BstHHI | GCGC | 1 cut(s) | 1141 |
| BstMAI | GTCTC | 3 cut(s) | 61, 460, 568 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 757 |
| BstNSI | RCATGY | 1 cut(s) | 1105 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 376 |
| BstSCI | CCNGG | 5 cut(s) | 24, 122, 286, 1250, 1251 |
| BstUI | CGCG | 1 cut(s) | 1053 |
| BstV1I | GCAGC | 2 cut(s) | 633, 1128 |
| BstX2I | RGATCY | 4 cut(s) | 128, 1003, 1255, 1339 |
| BstYI | RGATCY | 4 cut(s) | 128, 1003, 1255, 1339 |
| Bsu36I | CCTNAGG | 1 cut(s) | 789 |
| BsuI | GTATCC | 2 cut(s) | 531, 1231 |
| BsuRI | GGCC | 4 cut(s) | 547, 649, 992, 1247 |
| BtgI | CCRYGG | 1 cut(s) | 381 |
| BtrI | CACGTC | 1 cut(s) | 506 |
| BtsI | GCAGTG | 2 cut(s) | 624, 1311 |
| BtsIMutI | CAGTG | 4 cut(s) | 558, 624, 960, 1311 |
| Cac8I | GCNNGC | 1 cut(s) | 545 |
| CciI | TCATGA | 2 cut(s) | 103, 537 |
| CfoI | GCGC | 1 cut(s) | 1141 |
| Cfr10I | RCCGGY | 1 cut(s) | 335 |
| Cfr13I | GGNCC | 7 cut(s) | 267, 319, 371, 545, 1088, 1268, 1275 |
| Cfr9I | CCCGGG | 1 cut(s) | 1251 |
| Csp6I | GTAC | 2 cut(s) | 284, 889 |
| CspAI | ACCGGT | 1 cut(s) | 335 |
| CviQI | GTAC | 2 cut(s) | 284, 889 |
| DdeI | CTNAG | 6 cut(s) | 71, 458, 662, 743, 789, 952 |
| DraI | TTTAAA | 1 cut(s) | 421 |
| DraIII | CACNNNGTG | 1 cut(s) | 1045 |
| EaeI | YGGCCR | 2 cut(s) | 990, 1245 |
| Eam1104I | CTCTTC | 1 cut(s) | 630 |
| EarI | CTCTTC | 1 cut(s) | 630 |
| EciI | GGCGGA | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 2 cut(s) | 381, 1271 |
| Eco32I | GATATC | 1 cut(s) | 535 |
| Eco47I | GGWCC | 6 cut(s) | 267, 319, 371, 1088, 1268, 1275 |
| Eco57I | CTGAAG | 1 cut(s) | 993 |
| Eco81I | CCTNAGG | 1 cut(s) | 789 |
| Eco88I | CYCGRG | 3 cut(s) | 630, 773, 1251 |
| EcoO109I | RGGNCCY | 2 cut(s) | 267, 1268 |
| EcoRV | GATATC | 1 cut(s) | 535 |
| EcoT14I | CCWWGG | 2 cut(s) | 381, 1271 |
| EcoT22I | ATGCAT | 2 cut(s) | 16, 39 |
| ErhI | CCWWGG | 2 cut(s) | 381, 1271 |
| FaqI | GGGAC | 4 cut(s) | 232, 740, 938, 1323 |
| FauI | CCCGC | 1 cut(s) | 536 |
| FbaI | TGATCA | 2 cut(s) | 1125, 1329 |
| Fnu4HI | GCNGC | 3 cut(s) | 622, 1142, 1248 |
| Fsp4HI | GCNGC | 3 cut(s) | 622, 1142, 1248 |
| FspBI | CTAG | 4 cut(s) | 132, 252, 603, 831 |
| GlaI | GCGC | 1 cut(s) | 1140 |
| GluI | GCNGC | 3 cut(s) | 622, 1142, 1248 |
| GsaI | CCCAGC | 1 cut(s) | 848 |
| GsuI | CTGGAG | 3 cut(s) | 335, 588, 664 |
| HaeIII | GGCC | 4 cut(s) | 547, 649, 992, 1247 |
| HapII | CCGG | 7 cut(s) | 26, 123, 288, 336, 1114, 1252, 1278 |
| HhaI | GCGC | 1 cut(s) | 1141 |
| Hin6I | GCGC | 1 cut(s) | 1139 |
| HinP1I | GCGC | 1 cut(s) | 1139 |
| HindIII | AAGCTT | 1 cut(s) | 1324 |
| HinfI | GANTC | 5 cut(s) | 500, 776, 818, 974, 1185 |
| HpaII | CCGG | 7 cut(s) | 26, 123, 288, 336, 1114, 1252, 1278 |
| HphI | GGTGA | 1 cut(s) | 580 |
| Hpy166II | GTNNAC | 1 cut(s) | 856 |
| Hpy188I | TCNGA | 8 cut(s) | 206, 351, 399, 443, 681, 744, 823, 1088 |
| Hpy8I | GTNNAC | 1 cut(s) | 856 |
| HpyAV | CCTTC | 5 cut(s) | 120, 356, 523, 750, 1017 |
| HpyCH4III | ACNGT | 5 cut(s) | 323, 449, 519, 553, 1081 |
| HpyCH4IV | ACGT | 3 cut(s) | 505, 1153, 1296 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 14, 37, 143, 611, 621, 686, 1304, 1369 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 757 |
| HpyF3I | CTNAG | 6 cut(s) | 71, 458, 662, 743, 789, 952 |
| HpySE526I | ACGT | 3 cut(s) | 505, 1153, 1296 |
| HspAI | GCGC | 1 cut(s) | 1139 |
| Kpn2I | TCCGGA | 2 cut(s) | 1113, 1277 |
| Ksp22I | TGATCA | 2 cut(s) | 1125, 1329 |
| Lsp1109I | GCAGC | 2 cut(s) | 633, 1128 |
| LweI | GCATC | 2 cut(s) | 23, 620 |
| MaeI | CTAG | 4 cut(s) | 132, 252, 603, 831 |
| MaeII | ACGT | 3 cut(s) | 505, 1153, 1296 |
| MaeIII | GTNAC | 2 cut(s) | 1047, 1226 |
| MbiI | CCGCTC | 1 cut(s) | 543 |
| MboII | GAAGA | 6 cut(s) | 302, 412, 647, 710, 974, 983 |
| MfeI | CAATTG | 1 cut(s) | 761 |
| MflI | RGATCY | 4 cut(s) | 128, 1003, 1255, 1339 |
| MhlI | GDGCHC | 1 cut(s) | 343 |
| MlsI | TGGCCA | 1 cut(s) | 992 |
| MluCI | AATT | 7 cut(s) | 29, 54, 415, 583, 761, 1171, 1353 |
| MluNI | TGGCCA | 1 cut(s) | 992 |
| MlyI | GAGTC | 2 cut(s) | 785, 827 |
| MmeI | TCCRAC | 1 cut(s) | 1235 |
| Mox20I | TGGCCA | 1 cut(s) | 992 |
| Mph1103I | ATGCAT | 2 cut(s) | 16, 39 |
| MroI | TCCGGA | 2 cut(s) | 1113, 1277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 79 |
| MscI | TGGCCA | 1 cut(s) | 992 |
| MseI | TTAA | 6 cut(s) | 332, 414, 420, 798, 1299, 1376 |
| MslI | CAYNNNNRTG | 4 cut(s) | 222, 386, 593, 616 |
| Msp20I | TGGCCA | 1 cut(s) | 992 |
| MspI | CCGG | 7 cut(s) | 26, 123, 288, 336, 1114, 1252, 1278 |
| MspR9I | CCNGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| MunI | CAATTG | 1 cut(s) | 761 |
| Mva1269I | GAATGC | 1 cut(s) | 1202 |
| MvnI | CGCG | 1 cut(s) | 1053 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 757 |
| NciI | CCSGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| NcoI | CCATGG | 1 cut(s) | 381 |
| NlaIV | GGNNCC | 2 cut(s) | 22, 597 |
| NsiI | ATGCAT | 2 cut(s) | 16, 39 |
| NspI | RCATGY | 1 cut(s) | 1105 |
| NspV | TTCGAA | 1 cut(s) | 960 |
| OliI | CACNNNNGTG | 1 cut(s) | 593 |
| PaeR7I | CTCGAG | 1 cut(s) | 773 |
| PagI | TCATGA | 2 cut(s) | 103, 537 |
| PctI | GAATGC | 1 cut(s) | 1202 |
| PdmI | GAANNNNTTC | 1 cut(s) | 79 |
| PfeI | GAWTC | 3 cut(s) | 500, 974, 1185 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1154 |
| PfoI | TCCNGGA | 1 cut(s) | 122 |
| PinAI | ACCGGT | 1 cut(s) | 335 |
| PkrI | GCNGC | 3 cut(s) | 623, 1143, 1249 |
| PleI | GAGTC | 2 cut(s) | 784, 826 |
| PpsI | GAGTC | 2 cut(s) | 784, 826 |
| Ppu21I | YACGTR | 1 cut(s) | 1154 |
| PpuMI | RGGWCCY | 2 cut(s) | 267, 1268 |
| PshAI | GACNNNNGTC | 1 cut(s) | 376 |
| PshBI | ATTAAT | 1 cut(s) | 1376 |
| Psp5II | RGGWCCY | 2 cut(s) | 267, 1268 |
| PspFI | CCCAGC | 1 cut(s) | 844 |
| PspN4I | GGNNCC | 2 cut(s) | 22, 597 |
| PspPI | GGNCC | 7 cut(s) | 267, 319, 371, 545, 1088, 1268, 1275 |
| PspPPI | RGGWCCY | 2 cut(s) | 267, 1268 |
| PspXI | VCTCGAGB | 1 cut(s) | 773 |
| PsuI | RGATCY | 4 cut(s) | 128, 1003, 1255, 1339 |
| RsaI | GTAC | 2 cut(s) | 285, 890 |
| RsaNI | GTAC | 2 cut(s) | 284, 889 |
| RseI | CAYNNNNRTG | 4 cut(s) | 222, 386, 593, 616 |
| SaqAI | TTAA | 6 cut(s) | 332, 414, 420, 798, 1299, 1376 |
| SatI | GCNGC | 3 cut(s) | 622, 1142, 1248 |
| Sau96I | GGNCC | 7 cut(s) | 267, 319, 371, 545, 1088, 1268, 1275 |
| SchI | GAGTC | 2 cut(s) | 785, 827 |
| ScrFI | CCNGG | 5 cut(s) | 26, 124, 288, 1252, 1253 |
| SduI | GDGCHC | 1 cut(s) | 343 |
| SfaNI | GCATC | 2 cut(s) | 23, 620 |
| Sfr274I | CTCGAG | 1 cut(s) | 773 |
| SfuI | TTCGAA | 1 cut(s) | 960 |
| SinI | GGWCC | 6 cut(s) | 267, 319, 371, 1088, 1268, 1275 |
| SlaI | CTCGAG | 1 cut(s) | 773 |
| SmaI | CCCGGG | 1 cut(s) | 1253 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 222, 386, 593, 616 |
| SmlI | CTYRAG | 1 cut(s) | 773 |
| SmoI | CTYRAG | 1 cut(s) | 773 |
| Sse9I | AATT | 7 cut(s) | 29, 54, 415, 583, 761, 1171, 1353 |
| SsiI | CCGC | 4 cut(s) | 276, 543, 812, 1248 |
| SspMI | CTAG | 4 cut(s) | 132, 252, 603, 831 |
| StyD4I | CCNGG | 5 cut(s) | 24, 122, 286, 1250, 1251 |
| StyI | CCWWGG | 2 cut(s) | 381, 1271 |
| TaaI | ACNGT | 5 cut(s) | 323, 449, 519, 553, 1081 |
| TaiI | ACGT | 3 cut(s) | 508, 1156, 1299 |
| TaqI | TCGA | 5 cut(s) | 774, 917, 960, 1236, 1320 |
| TasI | AATT | 7 cut(s) | 29, 54, 415, 583, 761, 1171, 1353 |
| TauI | GCSGC | 1 cut(s) | 1250 |
| TfiI | GAWTC | 3 cut(s) | 500, 974, 1185 |
| Tru1I | TTAA | 6 cut(s) | 332, 414, 420, 798, 1299, 1376 |
| Tru9I | TTAA | 6 cut(s) | 332, 414, 420, 798, 1299, 1376 |
| TscAI | CASTG | 4 cut(s) | 558, 631, 960, 1311 |
| TseI | GCWGC | 2 cut(s) | 621, 1141 |
| TspDTI | ATGAA | 7 cut(s) | 92, 102, 201, 240, 375, 404, 542 |
| TspMI | CCCGGG | 1 cut(s) | 1251 |
| TspRI | CASTG | 4 cut(s) | 558, 631, 960, 1311 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1154 |
| VpaK11BI | GGWCC | 6 cut(s) | 267, 319, 371, 1088, 1268, 1275 |
| VspI | ATTAAT | 1 cut(s) | 1376 |
| XapI | RAATTY | 3 cut(s) | 29, 54, 1353 |
| XceI | RCATGY | 1 cut(s) | 1105 |
| XhoI | CTCGAG | 1 cut(s) | 773 |
| XmaI | CCCGGG | 1 cut(s) | 1251 |
| XmnI | GAANNNNTTC | 1 cut(s) | 79 |
| XspI | CTAG | 4 cut(s) | 132, 252, 603, 831 |
| Zsp2I | ATGCAT | 2 cut(s) | 16, 39 |