Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

5093588 .. 5097583

Gene Structure 3996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGATCATCAAAACAGCCACCGCGGCTTTCCTAGCCATACTCACCCGCTTCCTCCTCTTTTCTCCGACCCCAAAATCCTCCTACCACTCCCTCTTCATCTCCGACTCCCTCTCCTCCAACACCTCCATCTCCCGCCACCTCCACACCCTCACGCGCCGCCCCCACGTCGCCGGAACCCCCGCCAACGCCGAAGCCGCCGCCTACGTCCTCTCCATCTTCACCTCCTCCAATCTCCTATCCCGCATCACCCCCTACCACGTGGCCCTCACTTACCCCATCTCCCGCTCCCTAACCCTAACCCCAACCCCTTCACCTTCATCACCACCCATCAGTTTCGACCTCCAACAAGAAACCTACCCCGGCGACCCCTACGCTGACGTGGCAGCCGAGGTCCTCCCCACTTTCCACGCTTTTGCCAAGTCCGGGGATGTCACCGGTCACGTGGTTTACGTCAACTACGGGAGGGTAGAGGACTATGAGACACTGAAGAAAATGGGAGTCAACGTTTCTGGTACAATCGTGTTGGCTAGGTATGGAGAAATTTATAGAGGGAGCATAGTGCAGATTGCTTATGAGCAAGGGGCGGTTGGCGCTTTGGTGTATACGGATAGGAAGGACTACGGCGGAGGAGGCGGAGGGAGGTGGTTTCCGGAGGAGAAGTGGCTGCCGCCGAGTGGGGTACAGGTGGGGACGGTTTACAATGGGATAGGGGACCCGACTACGCCGGGGTGGGCAAGTAGTGAAGAATGTGAGAGGCTTTCTGATGAGGAAGTGGAGAAGGGTGGGGATTTGACTTTGATACCTTCACTGCCTATTTCTGGTGCTGATGGTGAGACTATTTTGAGGGCCATTGGAGGACAGGTGGCGAATGATGATTGGCAGGGGAGTGGGGATGCCCCAACTTATAGGGTTGGTCCAGGCCCTGGGGTTGTACATCTTAGTTACACTGGGAAGCAAGTTATAGAACAGATTGAGAATGTGATTGGTGTCATAGAAGGTGAGGAAGAACCTGATAGATTTGTCATTCTAGGTAATCACCGGGATGCATGGACATTTGGAGCTGTTGACCCAAATAGTGGCACTGCAGCACTGCTAGAGATTGCTCAAAGATTGGGGAAGTTGCAGGAAAAGGGGTGGAAACCTCGACGCACAATTATCTTGTGCAATTGGGATGCTGAAGAATACGGCCTGATAGGATCAACTGAATGGGTAGAAGAAAACAGAGACATGCTAGCTTCGAGGGCTATTGCTTACTTGAATGTTGACAGTGCAGTATATGCGCCAGGATTCTGGGCCTCTGCCACTCCACAGCTTGATGAACTTCTTAAGCAAGCTACTCAACAGGTCAAAGATCCTGATAACTCATCACAAACTCTCTACCAAGCATGGATTGGTTCCAGCAGTTCTCCTACAATTGGCAGGTTGGGAAGTGGAGAATCTGATTTTGCAGCTTTTGTTCAATATATTGGAATTCCGTCAGCTGACATGGCATTCGGTAAAGGATACCCAGTATACCATTCCATGTATGATGACTTTGTATGGATGGAAAAATTTGGTGATCCTTTCTTTCATAGGCATGTTGCAGTGGCAAGTTTATGGGGTTTGATAGCTCTTTGGCTAGCGGATGCAGAGTTTGTGCCTTTTGATTATACATCCTATGCGCTGGAGCTACAGAAATACATGAAGGATTTGGAAGTCGAGATCTCAGATAAGAACATAAACCTAACTCCTCTGTTCAAGTCCATTGAGGAGCTCAAAAAAGCAGCCACAATAATCAACAACCAGAGAAGGGAAATAGAACAAAACAAAGGTTGGCCTTCAATATGGAAGAACGATCATTTCAAGGTGAGAGAGCTCAATGACAGACTAATGATGGCAGAGCGTGCGTTTACAGATCAAGATGGTCTATTCGGAAGGTCATGGTATAAGCATTTGATTTATGGGCCCTCAAAGAATGATGATTACGGATCTAAATCGTTACCCGGCGTAGATGAAGCCATTGAAAAGGCAAAGAGACTGAATACAGCAGAGTCATGGAAATTTGTACAACATGAAGTTTGGAGGGTCGCTAGAGCTGTGAGACATGCTGCAAAAGTCATCAATGGTGATCTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

705

Amino Acids

77.98

Weight (kDa)

5.26

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	144 - 228	7e-07	PA domain
Peptidase_M28	PF04389	326 - 512	6e-24	Peptidase family M28
TFR_dimer	PF04253	573 - 700	3.8e-34	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1410
AccB7I	CCANNNNNTGG	2 cut(s)	923, 1076
AccBSI	CCGCTC	1 cut(s)	285
AccI	GTMKAC	2 cut(s)	602, 1512
AccII	CGCG	2 cut(s)	23, 154
AccIII	TCCGGA	1 cut(s)	649
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	4 cut(s)	1204, 1346, 1553, 1975
AcsI	RAATTY	4 cut(s)	540, 1470, 1550, 2039
AcuI	CTGAAG	2 cut(s)	506, 1197
AcvI	CACGTG	2 cut(s)	259, 442
AfaI	GTAC	4 cut(s)	514, 681, 933, 2046
AfiI	CCNNNNNNNGG	7 cut(s)	423, 674, 818, 923, 1076, 1415, 1789
AflII	CTTAAG	1 cut(s)	1325
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	6 cut(s)	1258, 1460, 1738, 1821, 1843, 2003
AjiI	CACGTC	2 cut(s)	166, 379
AjnI	CCWGG	3 cut(s)	916, 922, 1282
Alw21I	GWGCWC	2 cut(s)	1755, 1857
Alw26I	GTCTC	5 cut(s)	473, 827, 1218, 2008, 2074
AlwI	GGATC	4 cut(s)	1204, 1346, 1553, 1975
AlwNI	CAGNNNCTG	1 cut(s)	923
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	7 cut(s)	261, 846, 919, 1186, 1293, 1814, 1943
ApaI	GGGCCC	1 cut(s)	1947
ApeKI	GCWGC	6 cut(s)	383, 664, 1085, 1448, 1763, 2087
ApoI	RAATTY	4 cut(s)	540, 1470, 1550, 2039
ArsI	GACNNNNNNTTYG	2 cut(s)	1475, 1507
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	4 cut(s)	156, 593, 1282, 1663
AspS9I	GGNCC	9 cut(s)	262, 391, 712, 846, 914, 920, 1293, 1943, 1944
AsuC2I	CCSGG	5 cut(s)	360, 424, 726, 1040, 1983
AsuNHI	GCTAGC	2 cut(s)	1231, 1618
AvaII	GGWCC	3 cut(s)	391, 712, 914
BaeGI	GKGCMC	1 cut(s)	1947
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BanII	GRGCYC	3 cut(s)	1755, 1857, 1947
BbrPI	CACGTG	2 cut(s)	259, 442
Bbv12I	GWGCWC	2 cut(s)	1755, 1857
BbvI	GCAGC	6 cut(s)	395, 651, 1097, 1460, 1775, 2074
BccI	CCATC	8 cut(s)	134, 221, 284, 335, 821, 1537, 1867, 1895
BceAI	ACGGC	2 cut(s)	637, 1201
BciT130I	CCWGG	3 cut(s)	918, 924, 1284
BciVI	GTATCC	1 cut(s)	1496
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	5 cut(s)	360, 424, 726, 1040, 1983
BcoDI	GTCTC	5 cut(s)	473, 827, 1218, 2008, 2074
BfaI	CTAG	7 cut(s)	32, 528, 1028, 1094, 1232, 1619, 2070
BfmI	CTRYAG	2 cut(s)	1083, 1670
BfoI	RGCGCY	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	1325
BfuAI	ACCTGC	1 cut(s)	1410
BfuI	GTATCC	1 cut(s)	1496
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	1701
Bme1390I	CCNGG	8 cut(s)	360, 424, 726, 918, 924, 1040, 1284, 1983
Bme18I	GGWCC	3 cut(s)	391, 712, 914
BmgBI	CACGTC	2 cut(s)	166, 379
BmgT120I	GGNCC	9 cut(s)	262, 391, 712, 846, 914, 920, 1293, 1943, 1944
BmiI	GGNNCC	5 cut(s)	175, 713, 714, 1396, 1945
BmrFI	CCNGG	8 cut(s)	360, 424, 726, 918, 924, 1040, 1284, 1983
BmrI	ACTGGG	2 cut(s)	957, 1502
BmsI	GCATC	5 cut(s)	252, 883, 1033, 1162, 1615
BmtI	GCTAGC	2 cut(s)	1235, 1622
BmuI	ACTGGG	2 cut(s)	957, 1502
BpmI	CTGGAG	1 cut(s)	1685
BpuMI	CCSGG	5 cut(s)	360, 424, 726, 1040, 1983
BsaAI	YACGTR	2 cut(s)	259, 442
BsaBI	GATNNNNATC	1 cut(s)	1972
BsaJI	CCNNGG	7 cut(s)	21, 358, 387, 423, 725, 922, 923
BsaWI	WCCGGW	2 cut(s)	434, 649
Bsc4I	CCNNNNNNNGG	7 cut(s)	423, 674, 818, 923, 1076, 1415, 1789
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	952, 1508
Bse8I	GATNNNNATC	1 cut(s)	1972
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	3 cut(s)	918, 924, 1284
BseDI	CCNNGG	7 cut(s)	21, 358, 387, 423, 725, 922, 923
BseGI	GGATG	7 cut(s)	433, 898, 1048, 1177, 1548, 1630, 1652
BseJI	GATNNNNATC	1 cut(s)	1972
BseLI	CCNNNNNNNGG	7 cut(s)	423, 674, 818, 923, 1076, 1415, 1789
BseMII	CTCAG	1 cut(s)	1719
BseNI	ACTGG	2 cut(s)	952, 1508
BseRI	GAGGAG	7 cut(s)	44, 103, 214, 642, 668, 1719, 1763
BseSI	GKGCMC	1 cut(s)	1947
BseXI	GCAGC	6 cut(s)	395, 651, 1097, 1460, 1775, 2074
BsgI	GTGCAG	2 cut(s)	581, 1290
Bsh1236I	CGCG	2 cut(s)	23, 154
BshFI	GGCC	7 cut(s)	263, 848, 921, 1188, 1295, 1816, 1945
BshTI	ACCGGT	1 cut(s)	434
BsiHKAI	GWGCWC	2 cut(s)	1755, 1857
BsiSI	CCGG	8 cut(s)	171, 360, 423, 435, 650, 725, 1039, 1983
BslFI	GGGAC	2 cut(s)	703, 725
BslI	CCNNNNNNNGG	7 cut(s)	423, 674, 818, 923, 1076, 1415, 1789
BsmAI	GTCTC	5 cut(s)	473, 827, 1218, 2008, 2074
BsmFI	GGGAC	2 cut(s)	703, 725
BsmI	GAATGC	1 cut(s)	1490
BsnI	GGCC	7 cut(s)	263, 848, 921, 1188, 1295, 1816, 1945
Bsp120I	GGGCCC	1 cut(s)	1943
Bsp1286I	GDGCHC	3 cut(s)	1755, 1857, 1947
Bsp13I	TCCGGA	1 cut(s)	649
Bsp1407I	TGTACA	2 cut(s)	931, 2044
Bsp143I	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
BspANI	GGCC	7 cut(s)	263, 848, 921, 1188, 1295, 1816, 1945
BspCNI	CTCAG	1 cut(s)	1718
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	2 cut(s)	23, 154
BspLI	GGNNCC	5 cut(s)	175, 713, 714, 1396, 1945
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	1410
BspOI	GCTAGC	2 cut(s)	1235, 1622
BspPI	GGATC	4 cut(s)	1204, 1346, 1553, 1975
BspTI	CTTAAG	1 cut(s)	1325
BsrBI	CCGCTC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	434
BsrGI	TGTACA	2 cut(s)	931, 2044
BsrI	ACTGG	2 cut(s)	952, 1508
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	7 cut(s)	21, 358, 387, 423, 725, 922, 923
BssMI	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
BssNAI	GTATAC	2 cut(s)	603, 1513
Bst1107I	GTATAC	2 cut(s)	603, 1513
Bst2UI	CCWGG	3 cut(s)	918, 924, 1284
Bst4CI	ACNGT	2 cut(s)	694, 1268
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	1325
BstAPI	GCANNNNNTGC	2 cut(s)	1277, 1883
BstAUI	TGTACA	2 cut(s)	931, 2044
BstBAI	YACGTR	2 cut(s)	259, 442
BstC8I	GCNNGC	4 cut(s)	1233, 1332, 1620, 1884
BstDEI	CTNAG	2 cut(s)	938, 1705
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	7 cut(s)	433, 898, 1048, 1177, 1548, 1630, 1652
BstFNI	CGCG	2 cut(s)	23, 154
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	4 cut(s)	156, 593, 1282, 1663
BstKTI	GATC	9 cut(s)	6, 1199, 1354, 1561, 1704, 1837, 1897, 1970, 2110
BstMAI	GTCTC	5 cut(s)	473, 827, 1218, 2008, 2074
BstMBI	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
BstNI	CCWGG	3 cut(s)	918, 924, 1284
BstNSI	RCATGY	3 cut(s)	1231, 1580, 2087
BstSCI	CCNGG	8 cut(s)	358, 422, 724, 916, 922, 1038, 1282, 1981
BstSFI	CTRYAG	2 cut(s)	1083, 1670
BstSLI	GKGCMC	1 cut(s)	1947
BstUI	CGCG	2 cut(s)	23, 154
BstV1I	GCAGC	6 cut(s)	395, 651, 1097, 1460, 1775, 2074
BstX2I	RGATCY	3 cut(s)	1351, 1701, 1967
BstXI	CCANNNNNNTGG	1 cut(s)	1290
BstYI	RGATCY	3 cut(s)	1351, 1701, 1967
BstZ17I	GTATAC	2 cut(s)	603, 1513
BsuI	GTATCC	1 cut(s)	1496
BsuRI	GGCC	7 cut(s)	263, 848, 921, 1188, 1295, 1816, 1945
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	2 cut(s)	166, 379
BtsCI	GGATG	7 cut(s)	433, 898, 1048, 1177, 1548, 1630, 1652
BtsI	GCAGTG	4 cut(s)	806, 1080, 1088, 1590
BtsIMutI	CAGTG	7 cut(s)	482, 806, 945, 1080, 1088, 1273, 1590
BveI	ACCTGC	1 cut(s)	1410
Cac8I	GCNNGC	4 cut(s)	1233, 1332, 1620, 1884
CaiI	CAGNNNCTG	1 cut(s)	923
CfoI	GCGC	4 cut(s)	156, 593, 1282, 1663
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	9 cut(s)	262, 391, 712, 846, 914, 920, 1293, 1943, 1944
Cfr42I	CCGCGG	1 cut(s)	24
CseI	GACGC	1 cut(s)	1155
Csp6I	GTAC	4 cut(s)	513, 680, 932, 2045
CspAI	ACCGGT	1 cut(s)	434
CviQI	GTAC	4 cut(s)	513, 680, 932, 2045
DdeI	CTNAG	2 cut(s)	938, 1705
DpnI	GATC	9 cut(s)	5, 1198, 1353, 1560, 1703, 1836, 1896, 1969, 2109
DpnII	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	2 cut(s)	639, 648
Ecl136II	GAGCTC	2 cut(s)	1753, 1855
Eco24I	GRGCYC	3 cut(s)	1755, 1857, 1947
Eco47I	GGWCC	3 cut(s)	391, 712, 914
Eco53kI	GAGCTC	2 cut(s)	1753, 1855
Eco57I	CTGAAG	2 cut(s)	506, 1197
Eco72I	CACGTG	2 cut(s)	259, 442
EcoICRI	GAGCTC	2 cut(s)	1753, 1855
EcoO109I	RGGNCCY	4 cut(s)	391, 712, 920, 1944
EcoRI	GAATTC	1 cut(s)	1470
EcoRII	CCWGG	3 cut(s)	916, 922, 1282
EcoT22I	ATGCAT	1 cut(s)	1048
EcoT38I	GRGCYC	3 cut(s)	1755, 1857, 1947
FaqI	GGGAC	2 cut(s)	703, 725
FauI	CCCGC	5 cut(s)	53, 140, 187, 248, 290
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	602, 1512
FokI	GGATG	7 cut(s)	440, 905, 1055, 1184, 1555, 1637, 1639
FriOI	GRGCYC	3 cut(s)	1755, 1857, 1947
FspBI	CTAG	7 cut(s)	32, 528, 1028, 1094, 1232, 1619, 2070
GlaI	GCGC	4 cut(s)	155, 592, 1281, 1662
GsuI	CTGGAG	1 cut(s)	1685
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	7 cut(s)	263, 848, 921, 1188, 1295, 1816, 1945
HapII	CCGG	8 cut(s)	171, 360, 423, 435, 650, 725, 1039, 1983
HgaI	GACGC	1 cut(s)	1155
HhaI	GCGC	4 cut(s)	156, 593, 1282, 1663
Hin6I	GCGC	4 cut(s)	154, 591, 1280, 1661
HinP1I	GCGC	4 cut(s)	154, 591, 1280, 1661
HincII	GTYRAC	4 cut(s)	454, 502, 1066, 1264
HindII	GTYRAC	4 cut(s)	454, 502, 1066, 1264
HinfI	GANTC	5 cut(s)	104, 498, 1287, 1436, 2030
HpaII	CCGG	8 cut(s)	171, 360, 423, 435, 650, 725, 1039, 1983
Hpy166II	GTNNAC	9 cut(s)	448, 454, 502, 603, 697, 1066, 1264, 1513, 1890
Hpy188I	TCNGA	6 cut(s)	66, 103, 763, 1441, 1708, 1913
Hpy188III	TCNNGA	4 cut(s)	650, 1355, 1699, 1898
Hpy8I	GTNNAC	9 cut(s)	448, 454, 502, 603, 697, 1066, 1264, 1513, 1890
Hpy99I	CGWCG	2 cut(s)	170, 1149
HpyCH4III	ACNGT	2 cut(s)	694, 1268
HpyCH4IV	ACGT	7 cut(s)	165, 204, 258, 378, 441, 450, 504
HpyF3I	CTNAG	2 cut(s)	938, 1705
HpySE526I	ACGT	7 cut(s)	165, 204, 258, 378, 441, 450, 504
HspAI	GCGC	4 cut(s)	154, 591, 1280, 1661
KflI	GGGWCCC	1 cut(s)	712
Kpn2I	TCCGGA	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
LmnI	GCTCC	5 cut(s)	290, 552, 1058, 1666, 1750
Lsp1109I	GCAGC	6 cut(s)	395, 651, 1097, 1460, 1775, 2074
LweI	GCATC	5 cut(s)	252, 883, 1033, 1162, 1615
MaeI	CTAG	7 cut(s)	32, 528, 1028, 1094, 1232, 1619, 2070
MaeII	ACGT	7 cut(s)	165, 204, 258, 378, 441, 450, 504
MaeIII	GTNAC	4 cut(s)	430, 437, 941, 1977
MalI	GATC	9 cut(s)	5, 1198, 1353, 1560, 1703, 1836, 1896, 1969, 2109
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
MboII	GAAGA	8 cut(s)	85, 208, 499, 755, 1016, 1190, 1226, 1840
MfeI	CAATTG	2 cut(s)	1165, 1413
MflI	RGATCY	3 cut(s)	1351, 1701, 1967
MhlI	GDGCHC	3 cut(s)	1755, 1857, 1947
MluCI	AATT	7 cut(s)	540, 1152, 1165, 1413, 1470, 1550, 2039
MlyI	GAGTC	3 cut(s)	98, 507, 2039
MmeI	TCCRAC	4 cut(s)	89, 126, 141, 367
Mph1103I	ATGCAT	1 cut(s)	1048
MroI	TCCGGA	1 cut(s)	649
MseI	TTAA	1 cut(s)	1326
MslI	CAYNNNNRTG	2 cut(s)	1041, 1575
MspA1I	CMGCKG	2 cut(s)	23, 1481
MspCI	CTTAAG	1 cut(s)	1325
MspI	CCGG	8 cut(s)	171, 360, 423, 435, 650, 725, 1039, 1983
MspR9I	CCNGG	8 cut(s)	360, 424, 726, 918, 924, 1040, 1284, 1983
MunI	CAATTG	2 cut(s)	1165, 1413
Mva1269I	GAATGC	1 cut(s)	1490
MvaI	CCWGG	3 cut(s)	918, 924, 1284
MvnI	CGCG	2 cut(s)	23, 154
NciI	CCSGG	5 cut(s)	360, 424, 726, 1040, 1983
NdeII	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
NheI	GCTAGC	2 cut(s)	1231, 1618
NlaIV	GGNNCC	5 cut(s)	175, 713, 714, 1396, 1945
NmeAIII	GCCGAG	2 cut(s)	412, 696
NmuCI	GTSAC	2 cut(s)	430, 437
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	3 cut(s)	1231, 1580, 2087
PasI	CCCWGGG	1 cut(s)	923
PcsI	WCGNNNNNNNCGW	2 cut(s)	384, 447
PctI	GAATGC	1 cut(s)	1490
PfeI	GAWTC	2 cut(s)	1287, 1436
PflMI	CCANNNNNTGG	2 cut(s)	923, 1076
PinAI	ACCGGT	1 cut(s)	434
PleI	GAGTC	3 cut(s)	98, 506, 2038
PmaCI	CACGTG	2 cut(s)	259, 442
PmlI	CACGTG	2 cut(s)	259, 442
PpsI	GAGTC	3 cut(s)	98, 506, 2038
Ppu21I	YACGTR	2 cut(s)	259, 442
PpuMI	RGGWCCY	2 cut(s)	391, 712
Psp124BI	GAGCTC	2 cut(s)	1755, 1857
Psp1406I	AACGTT	1 cut(s)	504
Psp5II	RGGWCCY	2 cut(s)	391, 712
Psp6I	CCWGG	3 cut(s)	916, 922, 1282
PspCI	CACGTG	2 cut(s)	259, 442
PspGI	CCWGG	3 cut(s)	916, 922, 1282
PspN4I	GGNNCC	5 cut(s)	175, 713, 714, 1396, 1945
PspOMI	GGGCCC	1 cut(s)	1943
PspPI	GGNCC	9 cut(s)	262, 391, 712, 846, 914, 920, 1293, 1943, 1944
PspPPI	RGGWCCY	2 cut(s)	391, 712
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	3 cut(s)	1351, 1701, 1967
PvuII	CAGCTG	1 cut(s)	1481
RsaI	GTAC	4 cut(s)	514, 681, 933, 2046
RsaNI	GTAC	4 cut(s)	513, 680, 932, 2045
RseI	CAYNNNNRTG	2 cut(s)	1041, 1575
SacI	GAGCTC	2 cut(s)	1755, 1857
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	1326
Sau3AI	GATC	9 cut(s)	3, 1196, 1351, 1558, 1701, 1834, 1894, 1967, 2107
Sau96I	GGNCC	9 cut(s)	262, 391, 712, 846, 914, 920, 1293, 1943, 1944
SchI	GAGTC	3 cut(s)	98, 507, 2039
ScrFI	CCNGG	8 cut(s)	360, 424, 726, 918, 924, 1040, 1284, 1983
SduI	GDGCHC	3 cut(s)	1755, 1857, 1947
SfaNI	GCATC	5 cut(s)	252, 883, 1033, 1162, 1615
SfcI	CTRYAG	2 cut(s)	1083, 1670
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	3 cut(s)	391, 712, 914
SmiMI	CAYNNNNRTG	2 cut(s)	1041, 1575
SmlI	CTYRAG	1 cut(s)	1325
SmoI	CTYRAG	1 cut(s)	1325
Sse9I	AATT	7 cut(s)	540, 1152, 1165, 1413, 1470, 1550, 2039
SspMI	CTAG	7 cut(s)	32, 528, 1028, 1094, 1232, 1619, 2070
SstI	GAGCTC	2 cut(s)	1755, 1857
StyD4I	CCNGG	8 cut(s)	358, 422, 724, 916, 922, 1038, 1282, 1981
TaaI	ACNGT	2 cut(s)	694, 1268
TaiI	ACGT	7 cut(s)	168, 207, 261, 381, 444, 453, 507
TaqI	TCGA	4 cut(s)	336, 1144, 1238, 1698
TasI	AATT	7 cut(s)	540, 1152, 1165, 1413, 1470, 1550, 2039
TatI	WGTACW	2 cut(s)	931, 2044
TauI	GCSGC	5 cut(s)	26, 159, 197, 200, 670
TfiI	GAWTC	2 cut(s)	1287, 1436
Tru1I	TTAA	1 cut(s)	1326
Tru9I	TTAA	1 cut(s)	1326
TscAI	CASTG	7 cut(s)	489, 813, 952, 1087, 1095, 1273, 1590
TseFI	GTSAC	2 cut(s)	430, 437
TseI	GCWGC	6 cut(s)	383, 664, 1085, 1448, 1763, 2087
Tsp45I	GTSAC	2 cut(s)	430, 437
TspDTI	ATGAA	7 cut(s)	85, 306, 1332, 1559, 1697, 2007, 2067
TspGWI	ACGGA	3 cut(s)	620, 1464, 1980
TspRI	CASTG	7 cut(s)	489, 813, 952, 1087, 1095, 1273, 1590
Van91I	CCANNNNNTGG	2 cut(s)	923, 1076
Vha464I	CTTAAG	1 cut(s)	1325
VpaK11BI	GGWCC	3 cut(s)	391, 712, 914
XapI	RAATTY	4 cut(s)	540, 1470, 1550, 2039
XceI	RCATGY	3 cut(s)	1231, 1580, 2087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1388
XmiI	GTMKAC	2 cut(s)	602, 1512
XspI	CTAG	7 cut(s)	32, 528, 1028, 1094, 1232, 1619, 2070
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.