Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502141.1

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3032

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2935 bp

gattgtcagagttacctaagaatgatggtggttacatttcttctgatccagcatctgttgagagatatgtggttgtacatggacctataatatttcagctgtttacagaatttccagatgtgaagattaaaaattgtccatttgttcatggtcttcgagacaaaatggagaagaggcaccatactaaatgggtagtaaataagaagattttacagaagagtgaatcaaatttgaacccaagggcatcgatgggacctgtggtatccaagaggaagacaatgcaggctacaacaacgaagctgattaacaggatctggggggactactattcaaattactctcctgaagattcaagcccgggagcaacttgtgaaaaaatagaagaggaagaagttgaagaagaggcccaagaggacatagaagaggatgatgcagaagagaattcatcagtaatggaaaaagcccaaaggccttctccaattttaagaaaaattaaaccatgctccagcagcaagaagattttgtggggtgacgagcctctgggagaaacgtgttctggtgaagctctatacaagcatgctgttcttcgtggagaagagatttctgtgggtggggctgttttggtggaagttgatggctcagatgaacttcctgttatctattttgtagaatacatgtatgaatcatcagatggagaaaagatgttccatggcagaatgatgcagcaaggatctgatactgttcttggaaacactgctaatgagagggagctattcttgacaaatgagtgcataaacttggcattaaaggatgtgaaacagacagttgttgtgggcatcaagtcaatgccatgggggcatcaatataggaaggagaatgctgatgctaatagaattgatagagcaagagcagaagagaggaagaagaaaggattgccgactgaatattactgtagaagtttgtattgccctgagcaaggtgctttctttagtctttctcgtcataccattggtctgggctctggtttctgccactcttgcaaattcaatgaagatgagaaggccaaagaagtctttgaagtgaattcatcaaagactggttttatatacagtggagatgagtactcagttcatgattatgtctacgtaagcccctaccagttttctgtgcaaacgattgaaactgaacttttcaaggctggacggaatttggggttgaaaccttttgttgtgtgccaagtgctggggataattactgcaaagggatctaaacaatctgaaatgaagtctacccaggttaaagttcgaagatttttcagaccagaggacatttcggttgagaaagcatactgctctgatattagagaggtctactacagtgaagaactacatattttgcctgtagatagcatagaaggaaaatgtgaagtcagaaagaggagtgatcttccagaatgcaatgctcctgcattgtttcagcatatattcttctgtgagcatctatatgatccttctaacgggtctattaagcagttgccggctaacatcagggtaaagtactcaacagtaggtggtgatcctgagtctagaaagagaaagggcaagtgtaaagaaggagaagatgttccagaagttcagaaacagagggatgattctgaccacaaatgcttagccactttggacatatttgctggatgtggtggcttatcggaggggttgcatcaggcgggtgtctcagtaaccaagtgggcaatcgagtatgaagagccggctggacaggctttccaactcaaccatcctgagtccaaggtgttcatcaataattgcaatgtcatcttgaaggctgtcatggacaaatgtggagatgtggatgattgcatctcaaccagtgatgccaatgatttagctgcatcactagacgataaagtgaaaaatgatctgcccttgccagggcaagtagactttattaatggaggccctccatgccagggtttttctggtatgaatagattcaataccagcacgtggagtaaagtccagtgtgaaatgatattggctttcttatcctttgctgattacttccggccaaaatacttcctcctggagaatgtgaggaactttgtgtcttttaataaaggacagacattccgtctgactctggcttcgcttcttgagatgggttatcaggtgaggtttggtattctggaagctggagcttacggggtttcccagtcccgaaagcgagcatttatttgggcagctgcaccagatgagattcttcccgaatggccagagccaatgcatgtttttggtgtgccagagttgaagattaatttatccagtaattcatattatgctgctgttcggagtactgcaagcggagcccctttccgacccataacggtaagagacacaatcggcgatctcccagctgtaggcaatggagcatccaagggcaatctggagtatgaaagtgaccctgtctcgtggttccagaagaaaatcagagggaacatggctgttttgactgatcacatttcaaaagaaatgaacgagctgaacctcattcggtgcaagaggattcccaagaggcctggtgcagactggaaggaccttccagaggaaaaagtgacgctctctactggtcaagtagtcgacttgataccatggtgcctgcccaacactgccaaacgccacaaccagtggaagggcctgttcggaaggttggactgggaaggcaacttcccaacctccgtcactgatcctcagccaatgggcaaggtgggaatgtgcttccatcctgaccaggacaggattataacagttagagaatgcgctcgttctcaaggctttcccgatagctaccagttttatggcaacactctccacaagcacaggcagattggaaacgctgtccctccaactctggcttatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

978

Amino Acids

109.92

Weight (kDa)

5.92

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2818
AccB1I	GGYRCC	2 cut(s)	176, 2669
AccB7I	CCANNNNNTGG	2 cut(s)	1242, 2024
AccI	GTMKAC	5 cut(s)	1142, 1288, 1370, 1958, 2654
AciI	CCGC	2 cut(s)	1726, 2378
AclWI	GGATC	7 cut(s)	40, 319, 738, 1272, 1501, 1570, 2755
AcoI	YGGCCR	2 cut(s)	2083, 2287
AcsI	RAATTY	6 cut(s)	109, 228, 441, 1042, 1083, 1206
AcuI	CTGAAG	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	2024
AfaI	GTAC	4 cut(s)	77, 1123, 1558, 2370
AflIII	ACRYGT	2 cut(s)	550, 674
AhdI	GACNNNNNGTC	1 cut(s)	2147
AjnI	CCWGG	6 cut(s)	1292, 1947, 1985, 2099, 2592, 2804
AloI	GAACNNNNNNTCC	2 cut(s)	1607, 1639
Alw26I	GTCTC	4 cut(s)	152, 1737, 2402, 2487
AlwI	GGATC	7 cut(s)	40, 319, 738, 1272, 1501, 1570, 2755
AlwNI	CAGNNNCTG	2 cut(s)	55, 314
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	8 cut(s)	404, 469, 1061, 1974, 2083, 2287, 2590, 2709
ApeKI	GCWGC	6 cut(s)	509, 723, 1906, 2257, 2260, 2356
ApoI	RAATTY	6 cut(s)	109, 228, 441, 1042, 1083, 1206
ArsI	GACNNNNNNTTYG	2 cut(s)	2145, 2177
AseI	ATTAAT	2 cut(s)	1967, 2330
Asp700I	GAANNNNTTC	2 cut(s)	1622, 2008
AspLEI	GCGC	1 cut(s)	2836
AspS9I	GGNCC	6 cut(s)	82, 253, 405, 1975, 2610, 2709
AsuC2I	CCSGG	2 cut(s)	358, 359
AsuHPI	GGTGA	4 cut(s)	541, 571, 1585, 2199
AsuII	TTCGAA	1 cut(s)	1305
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	3 cut(s)	82, 253, 2610
BaeI	ACNNNNGTAYC	2 cut(s)	2653, 2686
BalI	TGGCCA	1 cut(s)	2289
BanI	GGYRCC	2 cut(s)	176, 2669
BanII	GRGCYC	2 cut(s)	1021, 2385
BauI	CACGAG	1 cut(s)	2484
BbrPI	CACGTG	1 cut(s)	2024
BbsI	GAAGAC	2 cut(s)	145, 280
BbvCI	CCTCAGC	1 cut(s)	2765
BbvI	GCAGC	6 cut(s)	521, 735, 1893, 2247, 2269, 2343
BccI	CCATC	7 cut(s)	19, 243, 628, 685, 1802, 2169, 2804
BciT130I	CCWGG	6 cut(s)	1294, 1949, 1987, 2101, 2594, 2806
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	2529
BcnI	CCSGG	2 cut(s)	358, 359
BcoDI	GTCTC	4 cut(s)	152, 1737, 2402, 2487
BfaI	CTAG	2 cut(s)	1586, 1915
BfmI	CTRYAG	4 cut(s)	951, 1374, 1400, 2432
BfuI	GTATCC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	855
BisI	GCNGC	6 cut(s)	510, 724, 1907, 2258, 2261, 2357
BlpI	GCTNAGC	1 cut(s)	1668
BlsI	GCNGC	6 cut(s)	511, 725, 1908, 2259, 2262, 2358
BmcAI	AGTACT	3 cut(s)	1123, 1558, 2370
Bme1390I	CCNGG	8 cut(s)	358, 359, 1294, 1949, 1987, 2101, 2594, 2806
Bme18I	GGWCC	3 cut(s)	82, 253, 2610
BmeRI	GACNNNNNGTC	1 cut(s)	2147
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	6 cut(s)	82, 253, 405, 1975, 2610, 2709
BmiI	GGNNCC	5 cut(s)	178, 254, 2382, 2491, 2671
BmrFI	CCNGG	8 cut(s)	358, 359, 1294, 1949, 1987, 2101, 2594, 2806
BmrI	ACTGGG	2 cut(s)	2223, 2739
BmuI	ACTGGG	2 cut(s)	2223, 2739
BpiI	GAAGAC	2 cut(s)	145, 280
BpmI	CTGGAG	4 cut(s)	489, 2122, 2231, 2482
Bpu10I	CCTNAGC	2 cut(s)	971, 2765
Bpu1102I	GCTNAGC	1 cut(s)	1668
Bpu14I	TTCGAA	1 cut(s)	1305
BpuEI	CTTGAG	2 cut(s)	2191, 2828
BpuMI	CCSGG	2 cut(s)	358, 359
Bsa29I	ATCGAT	1 cut(s)	247
BsaAI	YACGTR	2 cut(s)	1146, 2024
BsaXI	ACNNNNNCTCC	2 cut(s)	1607, 1637
Bse118I	RCCGGY	2 cut(s)	1536, 1767
Bse3DI	GCAATG	3 cut(s)	1464, 1833, 2445
BseBI	CCWGG	6 cut(s)	1294, 1949, 1987, 2101, 2594, 2806
BseCI	ATCGAT	1 cut(s)	247
BseGI	GGATG	8 cut(s)	432, 816, 1653, 1699, 1794, 1875, 2446, 2796
BseMI	GCAATG	3 cut(s)	1464, 1833, 2445
BseMII	CTCAG	7 cut(s)	653, 962, 1139, 1571, 1748, 1790, 2779
BseRI	GAGGAG	1 cut(s)	1452
BseXI	GCAGC	6 cut(s)	521, 735, 1893, 2247, 2269, 2343
BseYI	CCCAGC	2 cut(s)	1242, 2427
BsgI	GTGCAG	2 cut(s)	2246, 2618
BshFI	GGCC	8 cut(s)	406, 471, 1063, 1976, 2085, 2289, 2592, 2711
BshNI	GGYRCC	2 cut(s)	176, 2669
BshVI	ATCGAT	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	358, 1537, 1768, 2082
BslFI	GGGAC	4 cut(s)	266, 334, 2217, 2899
BsmAI	GTCTC	4 cut(s)	152, 1737, 2402, 2487
BsmFI	GGGAC	4 cut(s)	266, 334, 2217, 2899
BsmI	GAATGC	3 cut(s)	882, 1459, 2836
BsnI	GGCC	8 cut(s)	406, 471, 1063, 1976, 2085, 2289, 2592, 2711
BsoBI	CYCGRG	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	1305
Bsp1286I	GDGCHC	2 cut(s)	1021, 2385
Bsp1407I	TGTACA	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	1668
Bsp19I	CCATGG	3 cut(s)	708, 850, 2665
BspACI	CCGC	2 cut(s)	1726, 2378
BspANI	GGCC	8 cut(s)	406, 471, 1063, 1976, 2085, 2289, 2592, 2711
BspCNI	CTCAG	7 cut(s)	652, 963, 1138, 1572, 1747, 1791, 2778
BspDI	ATCGAT	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	1131
BspLI	GGNNCC	5 cut(s)	178, 254, 2382, 2491, 2671
BspPI	GGATC	7 cut(s)	40, 319, 738, 1272, 1501, 1570, 2755
BspQI	GCTCTTC	1 cut(s)	1757
BspT104I	TTCGAA	1 cut(s)	1305
BspT107I	GGYRCC	2 cut(s)	176, 2669
BsrDI	GCAATG	3 cut(s)	1464, 1833, 2445
BsrFI	RCCGGY	2 cut(s)	1536, 1767
BsrGI	TGTACA	1 cut(s)	75
BssAI	RCCGGY	2 cut(s)	1536, 1767
BssSI	CACGAG	1 cut(s)	2484
BssT1I	CCWWGG	6 cut(s)	238, 708, 850, 1805, 2450, 2665
Bst2BI	CACGAG	1 cut(s)	2484
Bst2UI	CCWGG	6 cut(s)	1294, 1949, 1987, 2101, 2594, 2806
Bst4CI	ACNGT	8 cut(s)	741, 825, 952, 1111, 1378, 1566, 2403, 2823
Bst6I	CTCTTC	9 cut(s)	166, 211, 377, 395, 416, 431, 590, 908, 1757
BstAUI	TGTACA	1 cut(s)	75
BstBAI	YACGTR	2 cut(s)	1146, 2024
BstBI	TTCGAA	1 cut(s)	1305
BstC8I	GCNNGC	7 cut(s)	284, 578, 1538, 1769, 2243, 2376, 2674
BstDEI	CTNAG	9 cut(s)	17, 639, 971, 1125, 1580, 1668, 1734, 1799, 2765
BstDSI	CCRYGG	3 cut(s)	708, 850, 2665
BstENI	CCTNNNNNAGG	2 cut(s)	974, 2617
BstF5I	GGATG	8 cut(s)	432, 816, 1653, 1699, 1794, 1875, 2446, 2796
BstHHI	GCGC	1 cut(s)	2836
BstMAI	GTCTC	4 cut(s)	152, 1737, 2402, 2487
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 855, 1037, 1777, 1982, 2380
BstNI	CCWGG	6 cut(s)	1294, 1949, 1987, 2101, 2594, 2806
BstNSI	RCATGY	3 cut(s)	580, 678, 2305
BstSCI	CCNGG	8 cut(s)	356, 357, 1292, 1947, 1985, 2099, 2592, 2804
BstSFI	CTRYAG	4 cut(s)	951, 1374, 1400, 2432
BstSNI	TACGTA	1 cut(s)	1146
BstV1I	GCAGC	6 cut(s)	521, 735, 1893, 2247, 2269, 2343
BstV2I	GAAGAC	2 cut(s)	145, 280
BstX2I	RGATCY	3 cut(s)	311, 730, 1264
BstXI	CCANNNNNNTGG	2 cut(s)	1014, 2872
BstYI	RGATCY	3 cut(s)	311, 730, 1264
Bsu15I	ATCGAT	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	8 cut(s)	406, 471, 1063, 1976, 2085, 2289, 2592, 2711
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	3 cut(s)	708, 850, 2665
BtsCI	GGATG	8 cut(s)	432, 816, 1653, 1699, 1794, 1875, 2446, 2796
BtsI	GCAGTG	2 cut(s)	752, 2681
BtsIMutI	CAGTG	8 cut(s)	752, 1116, 1383, 1893, 2044, 2681, 2707, 2756
Cac8I	GCNNGC	7 cut(s)	284, 578, 1538, 1769, 2243, 2376, 2674
CaiI	CAGNNNCTG	2 cut(s)	55, 314
CciI	TCATGA	1 cut(s)	1131
CfoI	GCGC	1 cut(s)	2836
Cfr10I	RCCGGY	2 cut(s)	1536, 1767
Cfr13I	GGNCC	6 cut(s)	82, 253, 405, 1975, 2610, 2709
Cfr9I	CCCGGG	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	247
CseI	GACGC	1 cut(s)	2640
Csp6I	GTAC	4 cut(s)	76, 1122, 1557, 2369
CviQI	GTAC	4 cut(s)	76, 1122, 1557, 2369
DdeI	CTNAG	9 cut(s)	17, 639, 971, 1125, 1580, 1668, 1734, 1799, 2765
DriI	GACNNNNNGTC	1 cut(s)	2147
EaeI	YGGCCR	2 cut(s)	2083, 2287
Eam1104I	CTCTTC	9 cut(s)	166, 211, 377, 395, 416, 431, 590, 908, 1757
Eam1105I	GACNNNNNGTC	1 cut(s)	2147
EarI	CTCTTC	9 cut(s)	166, 211, 377, 395, 416, 431, 590, 908, 1757
Eco105I	TACGTA	1 cut(s)	1146
Eco130I	CCWWGG	6 cut(s)	238, 708, 850, 1805, 2450, 2665
Eco147I	AGGCCT	2 cut(s)	471, 2592
Eco24I	GRGCYC	2 cut(s)	1021, 2385
Eco47I	GGWCC	3 cut(s)	82, 253, 2610
Eco57I	CTGAAG	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	2024
Eco88I	CYCGRG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	2 cut(s)	974, 2617
EcoO109I	RGGNCCY	4 cut(s)	253, 1975, 2610, 2709
EcoRI	GAATTC	2 cut(s)	441, 1083
EcoRII	CCWGG	6 cut(s)	1292, 1947, 1985, 2099, 2592, 2804
EcoT14I	CCWWGG	6 cut(s)	238, 708, 850, 1805, 2450, 2665
EcoT22I	ATGCAT	1 cut(s)	2303
EcoT38I	GRGCYC	2 cut(s)	1021, 2385
ErhI	CCWWGG	6 cut(s)	238, 708, 850, 1805, 2450, 2665
FaqI	GGGAC	4 cut(s)	266, 334, 2217, 2899
FauI	CCCGC	1 cut(s)	1719
FbaI	TGATCA	1 cut(s)	2529
FblI	GTMKAC	5 cut(s)	1142, 1288, 1370, 1958, 2654
Fnu4HI	GCNGC	6 cut(s)	510, 724, 1907, 2258, 2261, 2357
FokI	GGATG	8 cut(s)	439, 823, 1660, 1706, 1781, 1882, 2433, 2783
FriOI	GRGCYC	2 cut(s)	1021, 2385
Fsp4HI	GCNGC	6 cut(s)	510, 724, 1907, 2258, 2261, 2357
FspBI	CTAG	2 cut(s)	1586, 1915
GlaI	GCGC	1 cut(s)	2835
GluI	GCNGC	6 cut(s)	510, 724, 1907, 2258, 2261, 2357
GsaI	CCCAGC	2 cut(s)	1246, 2431
GsuI	CTGGAG	4 cut(s)	489, 2122, 2231, 2482
HaeIII	GGCC	8 cut(s)	406, 471, 1063, 1976, 2085, 2289, 2592, 2711
HapII	CCGG	4 cut(s)	358, 1537, 1768, 2082
HgaI	GACGC	1 cut(s)	2640
HhaI	GCGC	1 cut(s)	2836
Hin6I	GCGC	1 cut(s)	2834
HinP1I	GCGC	1 cut(s)	2834
HincII	GTYRAC	1 cut(s)	2655
HindII	GTYRAC	1 cut(s)	2655
HpaII	CCGG	4 cut(s)	358, 1537, 1768, 2082
HphI	GGTGA	4 cut(s)	541, 571, 1585, 2199
Hpy166II	GTNNAC	6 cut(s)	104, 1143, 1289, 1371, 1959, 2655
Hpy8I	GTNNAC	6 cut(s)	104, 1143, 1289, 1371, 1959, 2655
HpyCH4III	ACNGT	8 cut(s)	741, 825, 952, 1111, 1378, 1566, 2403, 2823
HpyCH4IV	ACGT	3 cut(s)	550, 1145, 2023
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 855, 1037, 1777, 1982, 2380
HpyF3I	CTNAG	9 cut(s)	17, 639, 971, 1125, 1580, 1668, 1734, 1799, 2765
HpySE526I	ACGT	3 cut(s)	550, 1145, 2023
HspAI	GCGC	1 cut(s)	2834
KroI	GCCGGC	2 cut(s)	1536, 1767
KroNI	GCCGGC	2 cut(s)	1538, 1769
Ksp22I	TGATCA	1 cut(s)	2529
LguI	GCTCTTC	1 cut(s)	1757
LmnI	GCTCC	7 cut(s)	361, 508, 768, 1467, 2212, 2380, 2443
Lsp1109I	GCAGC	6 cut(s)	521, 735, 1893, 2247, 2269, 2343
MaeI	CTAG	2 cut(s)	1586, 1915
MaeII	ACGT	3 cut(s)	550, 1145, 2023
MaeIII	GTNAC	7 cut(s)	11, 31, 529, 1737, 2473, 2628, 2754
MflI	RGATCY	3 cut(s)	311, 730, 1264
MhlI	GDGCHC	2 cut(s)	1021, 2385
MlsI	TGGCCA	1 cut(s)	2289
MluNI	TGGCCA	1 cut(s)	2289
MlyI	GAGTC	3 cut(s)	1591, 1810, 2148
MmeI	TCCRAC	3 cut(s)	1809, 2415, 2705
Mox20I	TGGCCA	1 cut(s)	2289
Mph1103I	ATGCAT	1 cut(s)	2303
MroNI	GCCGGC	2 cut(s)	1536, 1767
MroXI	GAANNNNTTC	2 cut(s)	1622, 2008
MscI	TGGCCA	1 cut(s)	2289
MslI	CAYNNNNRTG	2 cut(s)	1136, 1502
Msp20I	TGGCCA	1 cut(s)	2289
MspA1I	CMGCKG	3 cut(s)	99, 2260, 2431
MspI	CCGG	4 cut(s)	358, 1537, 1768, 2082
MspR9I	CCNGG	8 cut(s)	358, 359, 1294, 1949, 1987, 2101, 2594, 2806
Mva1269I	GAATGC	3 cut(s)	882, 1459, 2836
MvaI	CCWGG	6 cut(s)	1294, 1949, 1987, 2101, 2594, 2806
MwoI	GCNNNNNNNGC	6 cut(s)	509, 855, 1037, 1777, 1982, 2380
NaeI	GCCGGC	2 cut(s)	1538, 1769
NciI	CCSGG	2 cut(s)	358, 359
NcoI	CCATGG	3 cut(s)	708, 850, 2665
NgoMIV	GCCGGC	2 cut(s)	1536, 1767
NlaIV	GGNNCC	5 cut(s)	178, 254, 2382, 2491, 2671
NmuCI	GTSAC	4 cut(s)	529, 2473, 2628, 2754
NsiI	ATGCAT	1 cut(s)	2303
NspI	RCATGY	3 cut(s)	580, 678, 2305
NspV	TTCGAA	1 cut(s)	1305
PaeI	GCATGC	1 cut(s)	580
PagI	TCATGA	1 cut(s)	1131
PceI	AGGCCT	2 cut(s)	471, 2592
PciI	ACATGT	1 cut(s)	674
PciSI	GCTCTTC	1 cut(s)	1757
PctI	GAATGC	3 cut(s)	882, 1459, 2836
PdiI	GCCGGC	2 cut(s)	1538, 1769
PdmI	GAANNNNTTC	2 cut(s)	1622, 2008
PfeI	GAWTC	7 cut(s)	223, 349, 682, 1651, 2009, 2274, 2580
PflFI	GACNNNGTC	1 cut(s)	2479
PflMI	CCANNNNNTGG	2 cut(s)	1242, 2024
PfoI	TCCNGGA	1 cut(s)	2099
PkrI	GCNGC	6 cut(s)	511, 725, 1908, 2259, 2262, 2358
PleI	GAGTC	3 cut(s)	1590, 1809, 2148
PmaCI	CACGTG	1 cut(s)	2024
PmlI	CACGTG	1 cut(s)	2024
PpsI	GAGTC	3 cut(s)	1590, 1809, 2148
Ppu21I	YACGTR	2 cut(s)	1146, 2024
PpuMI	RGGWCCY	2 cut(s)	253, 2610
PscI	ACATGT	1 cut(s)	674
PshBI	ATTAAT	2 cut(s)	1967, 2330
PsiI	TTATAA	1 cut(s)	2818
Psp5II	RGGWCCY	2 cut(s)	253, 2610
Psp6I	CCWGG	6 cut(s)	1292, 1947, 1985, 2099, 2592, 2804
PspCI	CACGTG	1 cut(s)	2024
PspFI	CCCAGC	2 cut(s)	1242, 2427
PspGI	CCWGG	6 cut(s)	1292, 1947, 1985, 2099, 2592, 2804
PspN4I	GGNNCC	5 cut(s)	178, 254, 2382, 2491, 2671
PspPI	GGNCC	6 cut(s)	82, 253, 405, 1975, 2610, 2709
PspPPI	RGGWCCY	2 cut(s)	253, 2610
PstNI	CAGNNNCTG	2 cut(s)	55, 314
PsuI	RGATCY	3 cut(s)	311, 730, 1264
PsyI	GACNNNGTC	1 cut(s)	2479
PvuII	CAGCTG	3 cut(s)	99, 2260, 2431
RsaI	GTAC	4 cut(s)	77, 1123, 1558, 2370
RsaNI	GTAC	4 cut(s)	76, 1122, 1557, 2369
RseI	CAYNNNNRTG	2 cut(s)	1136, 1502
SalI	GTCGAC	1 cut(s)	2653
SapI	GCTCTTC	1 cut(s)	1757
SatI	GCNGC	6 cut(s)	510, 724, 1907, 2258, 2261, 2357
Sau96I	GGNCC	6 cut(s)	82, 253, 405, 1975, 2610, 2709
ScaI	AGTACT	3 cut(s)	1123, 1558, 2370
SchI	GAGTC	3 cut(s)	1591, 1810, 2148
ScrFI	CCNGG	8 cut(s)	358, 359, 1294, 1949, 1987, 2101, 2594, 2806
SduI	GDGCHC	2 cut(s)	1021, 2385
SfcI	CTRYAG	4 cut(s)	951, 1374, 1400, 2432
SfuI	TTCGAA	1 cut(s)	1305
SinI	GGWCC	3 cut(s)	82, 253, 2610
SmaI	CCCGGG	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	1136, 1502
SmlI	CTYRAG	2 cut(s)	2170, 2843
SmoI	CTYRAG	2 cut(s)	2170, 2843
SnaBI	TACGTA	1 cut(s)	1146
SphI	GCATGC	1 cut(s)	580
SseBI	AGGCCT	2 cut(s)	471, 2592
SsiI	CCGC	2 cut(s)	1726, 2378
SspI	AATATT	2 cut(s)	92, 946
SspMI	CTAG	2 cut(s)	1586, 1915
StuI	AGGCCT	2 cut(s)	471, 2592
StyD4I	CCNGG	8 cut(s)	356, 357, 1292, 1947, 1985, 2099, 2592, 2804
StyI	CCWWGG	6 cut(s)	238, 708, 850, 1805, 2450, 2665
TaaI	ACNGT	8 cut(s)	741, 825, 952, 1111, 1378, 1566, 2403, 2823
TaiI	ACGT	3 cut(s)	553, 1148, 2026
TaqI	TCGA	5 cut(s)	156, 247, 1305, 1754, 2654
TatI	WGTACW	4 cut(s)	75, 1121, 1556, 2368
TfiI	GAWTC	7 cut(s)	223, 349, 682, 1651, 2009, 2274, 2580
TscAI	CASTG	8 cut(s)	759, 1116, 1383, 1893, 2044, 2688, 2707, 2763
TseFI	GTSAC	4 cut(s)	529, 2473, 2628, 2754
TseI	GCWGC	6 cut(s)	509, 723, 1906, 2257, 2260, 2356
Tsp45I	GTSAC	4 cut(s)	529, 2473, 2628, 2754
TspGWI	ACGGA	3 cut(s)	1218, 2137, 2742
TspMI	CCCGGG	1 cut(s)	357
TspRI	CASTG	8 cut(s)	759, 1116, 1383, 1893, 2044, 2688, 2707, 2763
Tth111I	GACNNNGTC	1 cut(s)	2479
Van91I	CCANNNNNTGG	2 cut(s)	1242, 2024
VpaK11BI	GGWCC	3 cut(s)	82, 253, 2610
VspI	ATTAAT	2 cut(s)	1967, 2330
XagI	CCTNNNNNAGG	2 cut(s)	974, 2617
XapI	RAATTY	6 cut(s)	109, 228, 441, 1042, 1083, 1206
XbaI	TCTAGA	1 cut(s)	1585
XceI	RCATGY	3 cut(s)	580, 678, 2305
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1993, 2457
XmaI	CCCGGG	1 cut(s)	357
XmiI	GTMKAC	5 cut(s)	1142, 1288, 1370, 1958, 2654
XmnI	GAANNNNTTC	2 cut(s)	1622, 2008
XspI	CTAG	2 cut(s)	1586, 1915
ZrmI	AGTACT	3 cut(s)	1123, 1558, 2370
Zsp2I	ATGCAT	1 cut(s)	2303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.