Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

6205237 .. 6209634

Gene Structure 4398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3501 bp

ATGTTGGATTTCATTTTCTCCAAATCAGTTGTAGAGCACAATGAAAAAGGAAGTGAAAATGTAGGGATTTTTCCCACCTTGTTTTCCATAAAAGCGCGCGCGAAAATTTGCATCTTCCGCATCTTCCCGCCTATACGAGTTCATCCGTACTCGTTTCAAAACGGCAATAAATACACCCAGATAGAGAGAGTTCTCTCTTTCCTGTCCTGTCCCCATTCTCTGAATTCTAGGGTTTCGCTGGCGATTAGGGGAGAAATGGGTTCCGCCGCGGCAGCTGAGGCAGCGGAAGCAGCGGCGGTCTTGGAGACCAAAGGTGCCAATGGGGTTAAGCCACCGTCTTCGGCTTCCTCAGGAATGTCGAAGAAGAAGGGCAAACCAGCTTCCCAAAAGGCCACACCTGCCGGCTCTAAAACTAAGAAGCGAGATTTGCCTCAGAGCACTGAAGAGCCTTCCAGGTCTCGGAAAATGCCCAAGCGGGCTGCTGCATGTGGAAACTTTAAGGAGAAGCCTGTTCATATTTCTGAAAAGTCTAATCTTATTGAAACCAAGAAGGATCGAGTAGTGGATCAGGAGACTGATGCTATACTCCTGACTTGTGGCGAGGACCAAGACGCGGCACGCCCAAACAGAAGGCTGACCGATTTTATTGTGCATGATGAAAGTGGGTCACCCCAGCCCGTTGAGATGTTGGAAGTTGCTGACATGTTTATATCTGGTACTATATTGCCTCTGAATGAAAGTTCTGACAAGGACAAGCAAAGAGGTGTTAGATGTGAAGGTTTTGGGCGAATAGAATCTTGGGACATCTCTGGTTATGAAGAGGGCTCTCCTGTGATATGGCTCTCAACTGATGTTGCTGATTATGATTGTCGTAAACCTGCCAGCACCTATAGGAAGTACCATGATCAATTCTTTGAGAAAGCGCGTGCTTGCATAGAGGTTTACAAAAAGCTGTCAAAATCCAAATCTGACACCACTCTTGATGAATTACTTGCTGGCATTGCTCGATCAATGAGTGGAAGCAAATTCTTTTCTGGTACTGCAGCTATCAAAGAATTTGTTATATCTCAAGGCGAGTTTATCTATGATCAACTGATAGGTTTGGAGGAAGCATCAAAGAAGAATGATCAGCCATTTGCAGAGCTTCCTGTTCTTGTTGCCCTTAGAGATGAGAGCAGAAACTGTGGAGGTTTTGTCCAATCAAAACCAGCAAGTTCAAGTGGTACCCTAAAGATTGGTTCAGAAGATAGAGACGGAGAGACTGGACTGAATACATCTGGTTCATCCATAGTTGAAGCGGAGGAAAACGATGATGTAAAATTGGCAAGACTTTTGCAAGAAGAGGAGTACTGGAAGTCAATGAAACAGAAAAAACGTCAGGGTTCCGCCTCTTTGTCGAGCAAATACTATATCAAAATCAATGAAGATGAACTTGCCAATGATTATCCTCTACCTGCTTATTACAAGACTTCCATTGAAGAAACTGACGAGTTCATAGTTTTTGACAATGACTATGATATCTTAAATGCTGATGACCTTCCTCGAAGCATGCTTCATAATTGGAGTCTGTACAATTCAGACTCAAGATTGATTTCGTTGGAACTTCTTCCGATGAAACCTTGCACAGAAATTGATGTTACCATTTTCGGGTCTGGGGTTATGACTGCAGATGATGGAAGCGGCTTTTCTCTTGATTCTGATGGTTCTTCAAGTGGTCCAGGAGCACAGGATGCTGATGGAATGCCGATTTACTTGAGTGCAATAAAGGAGTGGATGATTGAATTGGGAGCATCAATGGTCTCAATATCAATCCGAACAGATTTGGCCTGGTACAGACTTGGACAGCCATCTAAGCAGTATGCTTTGTGGTATGAACCAATTCTGAAAACAGCAAAGGTTGGTAGAAGCATAATCACTTTGCTGAAAGAGCAAAGTCGAGTAGCACGACTTTCTTTTGCAGATGTTATTAAGAGATTGTCAGGGTTTCCAAAGGACCACTGTGCCTACATTTCTTCTGATCCAGCATTTGTTGAGAGATATGTGGTTGTCCATGGACAGATAATACTGCAACTGTTTTCAGAATTTCCTGATGCGCAGATTAAAAAGTGTCCATTTGTGGTTGGTCTTTCAAACAAAATGGAGGAGAGGCACCATACTAAATGGTTGGTAAAGAAGAAGAAGGTTGTGGAGAAGAGTGGATCAAACTTGAACCCAAGGGCATCCATGGGACCTCTGGTTTCCAAGAAGAAGGCAATGCGGGCTACAACAACAAGGCTGATCAACAGAATCTGGGGGGAGTACTATTTAAATTACTCTCCAGAAGATTCGAATGAGGAGGAAGCTAATGGTGGAAAGAAAGAGGAGGAGGAAGTTGAAGAAGAGGAGGGAAAAGAGGATGTAGAAGAGGATGAAGATGATGAGAAAGATAATCCAACGGAACAAGCCCAGAAGCGTAGTTCAATTTCAAGACAAACTAAATCATGCTCCAACAACAAGGAGGTTCTGTGGGATGGGGAGCCTGTGGGAACAACATGTTCTGGTGAAGCTCTTTATAAGTGTGCCAGTCTTCATGGAGATGAAATTTCTGTTGGTGGTGCAGTCTTGGTAGAACTTGATGGATCAGATGAACTTCCTGCCATTTATTTTGTTGAGTATATGTATGAAACAAGAAATGGAAGCAAAATGTTTCATGGGAGATCGATGGAGCGAGATCGATCTCAGACTGTTCTTGGCAACACTGCCAATGAGAGGGAGGTATTTTTGACAAATGAGTGCACAAACTTGGCATTAAAAGATGTTAAAGAGACAGCAGTTGTGGATATCAAATTAATGCCGTGGGGGCATCAATATAGGAAGGAGAATGCAGAAGCTAGCCGAAGAGATAGAGAAAGGGCAGAAGACAGGAAGAAGAATGGATTGCCAACTGAATATTACTGTAAAAGCTTGTATTGCCCAGAGGAAGGTGCTTTCTTTAACCTTTCCCGTGATACCATGGGTCTGGGTTCTGGTGCCTGCCACTCTTGCAAAGTGAACGAAGCTGAGGAGGCCAAGGAGGTTTTTAAAGTGAATTCATCAAAGACTGGTTTTGTATACAGGGGAGCTGAGTACTCAGTTCATGATTATGTCTATGTAAGTCCCCATTTTTTTTCTACGGAAAGGATGGAAACTGAAACTTTCAAGGCTAGTAGGAATTTGGGACTGAGAGCTTATGTTGTGTGCCAAGTGCTGGAGATAATTGGTACGAAGGAATCTAAACGACCTGGACCAGAATCTACCCTGGTTAAAGTTAGAAGGTTTTTCAGACCAGAGGACATTTCGGTTGAGAAGGCATACGGGTGTGATATTAGAGAGGTCTACTACAGTGAAGAAACACACATTGTGACGGTTGATGATATAGAAGGAAAATGTGAAGTCAGAAAGAAGAGTGATCTTCCGGTATGCAATGCTCCTGTCACTTTCGAGCATACCTTCTTCTGTGAGTATCTGAATCGATCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

1167

Amino Acids

130.65

Weight (kDa)

5.5

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2553
AarI	CACCTGC	1 cut(s)	406
Acc16I	TGCGCA	1 cut(s)	2094
Acc36I	ACCTGC	3 cut(s)	406, 886, 1462
Acc65I	GGTACC	1 cut(s)	1223
AccB1I	GGYRCC	4 cut(s)	314, 1223, 2148, 3008
AccB7I	CCANNNNNTGG	1 cut(s)	3226
AccI	GTMKAC	2 cut(s)	3090, 3354
AccII	CGCG	6 cut(s)	97, 99, 101, 269, 614, 925
AclWI	GGATC	6 cut(s)	561, 573, 2012, 2206, 2626, 3486
AcsI	RAATTY	8 cut(s)	105, 223, 1025, 1055, 2081, 2580, 3067, 3190
AcuI	CTGAAG	1 cut(s)	462
AdeI	CACNNNGTG	1 cut(s)	3379
AfiI	CCNNNNNNNGG	6 cut(s)	459, 613, 1647, 2748, 2960, 3226
AflIII	ACRYGT	2 cut(s)	702, 2531
AjnI	CCWGG	5 cut(s)	452, 1717, 1826, 3259, 3276
AjuI	GAANNNNNNNTTGG	4 cut(s)	781, 813, 2571, 2603
Alw21I	GWGCWC	4 cut(s)	39, 440, 1726, 2777
Alw26I	GTCTC	7 cut(s)	299, 462, 566, 1245, 1253, 1804, 2798
Alw44I	GTGCAC	1 cut(s)	2773
AlwI	GGATC	6 cut(s)	561, 573, 2012, 2206, 2626, 3486
AlwNI	CAGNNNCTG	2 cut(s)	1182, 2289
AoxI	GGCC	3 cut(s)	390, 1824, 3045
ApaLI	GTGCAC	1 cut(s)	2773
ApeKI	GCWGC	6 cut(s)	272, 281, 290, 479, 482, 1043
ApoI	RAATTY	8 cut(s)	105, 223, 1025, 1055, 2081, 2580, 3067, 3190
AseI	ATTAAT	1 cut(s)	2828
Asp700I	GAANNNNTTC	2 cut(s)	1605, 1878
Asp718I	GGTACC	1 cut(s)	1223
AspLEI	GCGC	5 cut(s)	97, 99, 101, 925, 2095
AspS9I	GGNCC	5 cut(s)	604, 1715, 1993, 2228, 3263
AsuHPI	GGTGA	2 cut(s)	660, 2552
AsuII	TTCGAA	1 cut(s)	2327
AsuNHI	GCTAGC	1 cut(s)	2870
AvaII	GGWCC	5 cut(s)	604, 1715, 1993, 2228, 3263
AxyI	CCTNAGG	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	2777
BanI	GGYRCC	4 cut(s)	314, 1223, 2148, 3008
BanII	GRGCYC	1 cut(s)	827
BbsI	GAAGAC	3 cut(s)	330, 2558, 2904
Bbv12I	GWGCWC	4 cut(s)	39, 440, 1726, 2777
BbvCI	CCTCAGC	2 cut(s)	276, 3039
BbvI	GCAGC	6 cut(s)	284, 293, 302, 466, 469, 1055
BccI	CCATC	8 cut(s)	1667, 1694, 1730, 1855, 2504, 2609, 2695, 3154
BceAI	ACGGC	2 cut(s)	178, 2818
BciT130I	CCWGG	5 cut(s)	454, 1719, 1828, 3261, 3278
BclI	TGATCA	4 cut(s)	904, 1087, 1126, 2277
BcoDI	GTCTC	7 cut(s)	299, 462, 566, 1245, 1253, 1804, 2798
BfaI	CTAG	3 cut(s)	228, 2871, 3183
BfmI	CTRYAG	4 cut(s)	889, 1041, 1665, 3358
BfuAI	ACCTGC	3 cut(s)	406, 886, 1462
BglI	GCCNNNNNGGC	1 cut(s)	2839
BmcAI	AGTACT	3 cut(s)	1349, 2300, 3107
Bme1390I	CCNGG	5 cut(s)	454, 1719, 1828, 3261, 3278
Bme18I	GGWCC	5 cut(s)	604, 1715, 1993, 2228, 3263
BmgT120I	GGNCC	5 cut(s)	604, 1715, 1993, 2228, 3263
BmiI	GGNNCC	8 cut(s)	262, 316, 1225, 1384, 2150, 2229, 2517, 3010
BmrFI	CCNGG	5 cut(s)	454, 1719, 1828, 3261, 3278
BmsI	GCATC	9 cut(s)	120, 129, 568, 1121, 1720, 1799, 2080, 2228, 2851
BmtI	GCTAGC	1 cut(s)	2874
BpiI	GAAGAC	3 cut(s)	330, 2558, 2904
BpmI	CTGGAG	2 cut(s)	2301, 3248
Bpu10I	CCTNAGC	2 cut(s)	276, 3039
Bpu14I	TTCGAA	1 cut(s)	2327
BpuEI	CTTGAG	3 cut(s)	1053, 1567, 1774
Bsa29I	ATCGAT	3 cut(s)	2699, 2713, 3490
BsaI	GGTCTC	3 cut(s)	299, 462, 1804
BsaJI	CCNNGG	8 cut(s)	267, 2050, 2213, 2223, 2834, 2991, 3048, 3276
BsaWI	WCCGGW	1 cut(s)	3433
BsaXI	ACNNNNNCTCC	4 cut(s)	1179, 1209, 2489, 2519
Bsc4I	CCNNNNNNNGG	6 cut(s)	459, 613, 1647, 2748, 2960, 3226
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	4 cut(s)	1267, 1355, 2562, 3085
Bse21I	CCTNAGG	1 cut(s)	349
Bse3DI	GCAATG	3 cut(s)	999, 2259, 3448
BseBI	CCWGG	5 cut(s)	454, 1719, 1828, 3261, 3278
BseCI	ATCGAT	3 cut(s)	2699, 2713, 3490
BseDI	CCNNGG	8 cut(s)	267, 2050, 2213, 2223, 2834, 2991, 3048, 3276
BseGI	GGATG	9 cut(s)	142, 1283, 1735, 1779, 2219, 2401, 2413, 2515, 3165
BseLI	CCNNNNNNNGG	6 cut(s)	459, 613, 1647, 2748, 2960, 3226
BseMI	GCAATG	3 cut(s)	999, 2259, 3448
BseMII	CTCAG	8 cut(s)	267, 363, 446, 2732, 3030, 3093, 3123, 3191
BseNI	ACTGG	4 cut(s)	1267, 1355, 2562, 3085
BsePI	GCGCGC	2 cut(s)	95, 97
BseRI	GAGGAG	7 cut(s)	1358, 2156, 2348, 2375, 2378, 2396, 3056
BseSI	GKGCMC	1 cut(s)	2777
BseXI	GCAGC	6 cut(s)	284, 293, 302, 466, 469, 1055
BseYI	CCCAGC	1 cut(s)	672
BsgI	GTGCAG	1 cut(s)	2616
Bsh1236I	CGCG	6 cut(s)	97, 99, 101, 269, 614, 925
BshFI	GGCC	3 cut(s)	392, 1826, 3047
BshNI	GGYRCC	4 cut(s)	314, 1223, 2148, 3008
BshVI	ATCGAT	3 cut(s)	2699, 2713, 3490
BsiHKAI	GWGCWC	4 cut(s)	39, 440, 1726, 2777
BsiSI	CCGG	2 cut(s)	402, 3434
BslFI	GGGAC	5 cut(s)	195, 815, 2241, 3120, 3210
BslI	CCNNNNNNNGG	6 cut(s)	459, 613, 1647, 2748, 2960, 3226
BsmAI	GTCTC	7 cut(s)	299, 462, 566, 1245, 1253, 1804, 2798
BsmBI	CGTCTC	1 cut(s)	1245
BsmFI	GGGAC	5 cut(s)	195, 815, 2241, 3120, 3210
BsmI	GAATGC	2 cut(s)	1746, 2866
BsnI	GGCC	3 cut(s)	392, 1826, 3047
Bso31I	GGTCTC	3 cut(s)	299, 462, 1804
Bsp119I	TTCGAA	1 cut(s)	2327
Bsp1286I	GDGCHC	5 cut(s)	39, 440, 827, 1726, 2777
Bsp1407I	TGTACA	1 cut(s)	1569
Bsp19I	CCATGG	3 cut(s)	2050, 2223, 2991
BspANI	GGCC	3 cut(s)	392, 1826, 3047
BspCNI	CTCAG	8 cut(s)	268, 362, 445, 2731, 3031, 3094, 3122, 3192
BspDI	ATCGAT	3 cut(s)	2699, 2713, 3490
BspFNI	CGCG	6 cut(s)	97, 99, 101, 269, 614, 925
BspHI	TCATGA	1 cut(s)	3115
BspLI	GGNNCC	8 cut(s)	262, 316, 1225, 1384, 2150, 2229, 2517, 3010
BspMAI	CTGCAG	2 cut(s)	1045, 1669
BspMI	ACCTGC	3 cut(s)	406, 886, 1462
BspOI	GCTAGC	1 cut(s)	2874
BspPI	GGATC	6 cut(s)	561, 573, 2012, 2206, 2626, 3486
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	2327
BspT107I	GGYRCC	4 cut(s)	314, 1223, 2148, 3008
BspTNI	GGTCTC	3 cut(s)	299, 462, 1804
BsrDI	GCAATG	3 cut(s)	999, 2259, 3448
BsrFI	RCCGGY	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	1569
BsrI	ACTGG	4 cut(s)	1267, 1355, 2562, 3085
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	8 cut(s)	267, 2050, 2213, 2223, 2834, 2991, 3048, 3276
BssHII	GCGCGC	2 cut(s)	95, 97
BssNAI	GTATAC	1 cut(s)	3091
BssT1I	CCWWGG	5 cut(s)	2050, 2213, 2223, 2991, 3048
Bst1107I	GTATAC	1 cut(s)	3091
Bst2UI	CCWGG	5 cut(s)	454, 1719, 1828, 3261, 3278
Bst4CI	ACNGT	8 cut(s)	336, 1184, 2000, 2073, 2725, 2936, 3362, 3385
Bst6I	CTCTTC	8 cut(s)	438, 813, 1335, 2186, 2373, 2397, 2872, 3416
BstAPI	GCANNNNNTGC	1 cut(s)	1730
BstAUI	TGTACA	1 cut(s)	1569
BstBI	TTCGAA	1 cut(s)	2327
BstDSI	CCRYGG	5 cut(s)	267, 2050, 2223, 2834, 2991
BstEII	GGTNACC	1 cut(s)	666
BstF5I	GGATG	9 cut(s)	142, 1283, 1735, 1779, 2219, 2401, 2413, 2515, 3165
BstFNI	CGCG	6 cut(s)	97, 99, 101, 269, 614, 925
BstHHI	GCGC	5 cut(s)	97, 99, 101, 925, 2095
BstMAI	GTCTC	7 cut(s)	299, 462, 566, 1245, 1253, 1804, 2798
BstNI	CCWGG	5 cut(s)	454, 1719, 1828, 3261, 3278
BstNSI	RCATGY	4 cut(s)	489, 706, 1552, 2535
BstPI	GGTNACC	1 cut(s)	666
BstSCI	CCNGG	5 cut(s)	452, 1717, 1826, 3259, 3276
BstSFI	CTRYAG	4 cut(s)	889, 1041, 1665, 3358
BstSLI	GKGCMC	1 cut(s)	2777
BstUI	CGCG	6 cut(s)	97, 99, 101, 269, 614, 925
BstV1I	GCAGC	6 cut(s)	284, 293, 302, 466, 469, 1055
BstV2I	GAAGAC	3 cut(s)	330, 2558, 2904
BstXI	CCANNNNNNTGG	1 cut(s)	2998
BstZ17I	GTATAC	1 cut(s)	3091
Bsu15I	ATCGAT	3 cut(s)	2699, 2713, 3490
Bsu36I	CCTNAGG	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	392, 1826, 3047
BsuTUI	ATCGAT	3 cut(s)	2699, 2713, 3490
BtgI	CCRYGG	5 cut(s)	267, 2050, 2223, 2834, 2991
BtsCI	GGATG	9 cut(s)	142, 1283, 1735, 1779, 2219, 2401, 2413, 2515, 3165
BtsI	GCAGTG	1 cut(s)	2736
BtsIMutI	CAGTG	4 cut(s)	438, 1996, 2736, 3367
BveI	ACCTGC	3 cut(s)	406, 886, 1462
CaiI	CAGNNNCTG	2 cut(s)	1182, 2289
CciI	TCATGA	1 cut(s)	3115
CfoI	GCGC	5 cut(s)	97, 99, 101, 925, 2095
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	5 cut(s)	604, 1715, 1993, 2228, 3263
Cfr42I	CCGCGG	1 cut(s)	270
ClaI	ATCGAT	3 cut(s)	2699, 2713, 3490
CseI	GACGC	1 cut(s)	620
DraI	TTTAAA	2 cut(s)	2307, 3061
DraIII	CACNNNGTG	1 cut(s)	3379
Eam1104I	CTCTTC	8 cut(s)	438, 813, 1335, 2186, 2373, 2397, 2872, 3416
EarI	CTCTTC	8 cut(s)	438, 813, 1335, 2186, 2373, 2397, 2872, 3416
EciI	GGCGGA	2 cut(s)	253, 1375
Eco130I	CCWWGG	5 cut(s)	2050, 2213, 2223, 2991, 3048
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	3 cut(s)	299, 462, 1804
Eco32I	GATATC	2 cut(s)	1519, 2821
Eco47I	GGWCC	5 cut(s)	604, 1715, 1993, 2228, 3263
Eco57I	CTGAAG	1 cut(s)	462
Eco81I	CCTNAGG	1 cut(s)	349
Eco91I	GGTNACC	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	2228
EcoO65I	GGTNACC	1 cut(s)	666
EcoRI	GAATTC	2 cut(s)	223, 3067
EcoRII	CCWGG	5 cut(s)	452, 1717, 1826, 3259, 3276
EcoRV	GATATC	2 cut(s)	1519, 2821
EcoT14I	CCWWGG	5 cut(s)	2050, 2213, 2223, 2991, 3048
EcoT38I	GRGCYC	1 cut(s)	827
ErhI	CCWWGG	5 cut(s)	2050, 2213, 2223, 2991, 3048
Esp3I	CGTCTC	1 cut(s)	1245
FalI	AAGNNNNNCTT	2 cut(s)	1416, 1448
FaqI	GGGAC	5 cut(s)	195, 815, 2241, 3120, 3210
FauI	CCCGC	3 cut(s)	135, 468, 2250
FbaI	TGATCA	4 cut(s)	904, 1087, 1126, 2277
FblI	GTMKAC	2 cut(s)	3090, 3354
FokI	GGATG	9 cut(s)	129, 1270, 1742, 1786, 2206, 2408, 2420, 2522, 3172
FriOI	GRGCYC	1 cut(s)	827
FspBI	CTAG	3 cut(s)	228, 2871, 3183
FspI	TGCGCA	1 cut(s)	2094
GlaI	GCGC	5 cut(s)	96, 98, 100, 924, 2094
GsaI	CCCAGC	1 cut(s)	676
GsuI	CTGGAG	2 cut(s)	2301, 3248
HaeIII	GGCC	3 cut(s)	392, 1826, 3047
HapII	CCGG	2 cut(s)	402, 3434
HgaI	GACGC	1 cut(s)	620
HhaI	GCGC	5 cut(s)	97, 99, 101, 925, 2095
Hin6I	GCGC	5 cut(s)	95, 97, 99, 923, 2093
HinP1I	GCGC	5 cut(s)	95, 97, 99, 923, 2093
HindIII	AAGCTT	1 cut(s)	2941
HinfI	GANTC	9 cut(s)	794, 1564, 1580, 1694, 2286, 2324, 3248, 3269, 3487
HpaII	CCGG	2 cut(s)	402, 3434
HphI	GGTGA	2 cut(s)	660, 2552
Hpy166II	GTNNAC	6 cut(s)	875, 943, 2775, 3031, 3091, 3355
Hpy8I	GTNNAC	6 cut(s)	875, 943, 2775, 3031, 3091, 3355
HpyCH4III	ACNGT	8 cut(s)	336, 1184, 2000, 2073, 2725, 2936, 3362, 3385
HpyCH4IV	ACGT	1 cut(s)	1375
HpySE526I	ACGT	1 cut(s)	1375
HspAI	GCGC	5 cut(s)	95, 97, 99, 923, 2093
KpnI	GGTACC	1 cut(s)	1227
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Ksp22I	TGATCA	4 cut(s)	904, 1087, 1126, 2277
KspI	CCGCGG	1 cut(s)	270
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	7 cut(s)	1721, 1787, 2489, 2515, 2704, 3098, 3451
Lsp1109I	GCAGC	6 cut(s)	284, 293, 302, 466, 469, 1055
LweI	GCATC	9 cut(s)	120, 129, 568, 1121, 1720, 1799, 2080, 2228, 2851
MaeI	CTAG	3 cut(s)	228, 2871, 3183
MaeII	ACGT	1 cut(s)	1375
MaeIII	GTNAC	4 cut(s)	666, 1636, 3379, 3451
MauBI	CGCGCGCG	1 cut(s)	97
MhlI	GDGCHC	5 cut(s)	39, 440, 827, 1726, 2777
MlyI	GAGTC	2 cut(s)	1573, 1574
MmeI	TCCRAC	4 cut(s)	669, 1578, 2456, 2511
MroNI	GCCGGC	1 cut(s)	401
MroXI	GAANNNNTTC	2 cut(s)	1605, 1878
MslI	CAYNNNNRTG	3 cut(s)	2574, 3120, 3334
MspA1I	CMGCKG	4 cut(s)	269, 275, 284, 293
MspI	CCGG	2 cut(s)	402, 3434
MspR9I	CCNGG	5 cut(s)	454, 1719, 1828, 3261, 3278
Mva1269I	GAATGC	2 cut(s)	1746, 2866
MvaI	CCWGG	5 cut(s)	454, 1719, 1828, 3261, 3278
MvnI	CGCG	6 cut(s)	97, 99, 101, 269, 614, 925
NaeI	GCCGGC	1 cut(s)	403
NcoI	CCATGG	3 cut(s)	2050, 2223, 2991
NgoMIV	GCCGGC	1 cut(s)	401
NheI	GCTAGC	1 cut(s)	2870
NlaIV	GGNNCC	8 cut(s)	262, 316, 1225, 1384, 2150, 2229, 2517, 3010
NmuCI	GTSAC	3 cut(s)	666, 3379, 3451
NsbI	TGCGCA	1 cut(s)	2094
NspI	RCATGY	4 cut(s)	489, 706, 1552, 2535
NspV	TTCGAA	1 cut(s)	2327
PaeI	GCATGC	1 cut(s)	1552
PagI	TCATGA	1 cut(s)	3115
PaqCI	CACCTGC	1 cut(s)	406
PauI	GCGCGC	2 cut(s)	95, 97
PciI	ACATGT	2 cut(s)	702, 2531
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	1942
PctI	GAATGC	2 cut(s)	1746, 2866
PdiI	GCCGGC	1 cut(s)	403
PdmI	GAANNNNTTC	2 cut(s)	1605, 1878
PfeI	GAWTC	7 cut(s)	794, 1694, 2286, 2324, 3248, 3269, 3487
PflMI	CCANNNNNTGG	1 cut(s)	3226
PfoI	TCCNGGA	1 cut(s)	1717
PleI	GAGTC	2 cut(s)	1572, 1574
PpsI	GAGTC	2 cut(s)	1572, 1574
PpuMI	RGGWCCY	1 cut(s)	2228
PscI	ACATGT	2 cut(s)	702, 2531
PshBI	ATTAAT	1 cut(s)	2828
PsiI	TTATAA	1 cut(s)	2553
Psp5II	RGGWCCY	1 cut(s)	2228
Psp6I	CCWGG	5 cut(s)	452, 1717, 1826, 3259, 3276
PspEI	GGTNACC	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	672
PspGI	CCWGG	5 cut(s)	452, 1717, 1826, 3259, 3276
PspN4I	GGNNCC	8 cut(s)	262, 316, 1225, 1384, 2150, 2229, 2517, 3010
PspPI	GGNCC	5 cut(s)	604, 1715, 1993, 2228, 3263
PspPPI	RGGWCCY	1 cut(s)	2228
PstI	CTGCAG	2 cut(s)	1045, 1669
PstNI	CAGNNNCTG	2 cut(s)	1182, 2289
PteI	GCGCGC	2 cut(s)	95, 97
PvuII	CAGCTG	1 cut(s)	275
RseI	CAYNNNNRTG	3 cut(s)	2574, 3120, 3334
SacII	CCGCGG	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	438
Sau96I	GGNCC	5 cut(s)	604, 1715, 1993, 2228, 3263
ScaI	AGTACT	3 cut(s)	1349, 2300, 3107
SchI	GAGTC	2 cut(s)	1573, 1574
ScrFI	CCNGG	5 cut(s)	454, 1719, 1828, 3261, 3278
SduI	GDGCHC	5 cut(s)	39, 440, 827, 1726, 2777
SfaNI	GCATC	9 cut(s)	120, 129, 568, 1121, 1720, 1799, 2080, 2228, 2851
SfcI	CTRYAG	4 cut(s)	889, 1041, 1665, 3358
Sfr303I	CCGCGG	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	2327
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	5 cut(s)	604, 1715, 1993, 2228, 3263
SmiI	ATTTAAAT	1 cut(s)	2307
SmiMI	CAYNNNNRTG	3 cut(s)	2574, 3120, 3334
SmlI	CTYRAG	3 cut(s)	1068, 1582, 1753
SmoI	CTYRAG	3 cut(s)	1068, 1582, 1753
SphI	GCATGC	1 cut(s)	1552
SspI	AATATT	1 cut(s)	2930
SspMI	CTAG	3 cut(s)	228, 2871, 3183
StyD4I	CCNGG	5 cut(s)	452, 1717, 1826, 3259, 3276
StyI	CCWWGG	5 cut(s)	2050, 2213, 2223, 2991, 3048
SwaI	ATTTAAAT	1 cut(s)	2307
TaaI	ACNGT	8 cut(s)	336, 1184, 2000, 2073, 2725, 2936, 3362, 3385
TaiI	ACGT	1 cut(s)	1378
TaqII	GACCGA	1 cut(s)	653
TatI	WGTACW	4 cut(s)	1347, 1569, 2298, 3105
TauI	GCSGC	5 cut(s)	269, 272, 296, 617, 1683
TfiI	GAWTC	7 cut(s)	794, 1694, 2286, 2324, 3248, 3269, 3487
TscAI	CASTG	4 cut(s)	445, 2003, 2743, 3367
TseFI	GTSAC	3 cut(s)	666, 3379, 3451
TseI	GCWGC	6 cut(s)	272, 281, 290, 479, 482, 1043
Tsp45I	GTSAC	3 cut(s)	666, 3379, 3451
TspGWI	ACGGA	4 cut(s)	135, 1269, 2450, 3167
TspRI	CASTG	4 cut(s)	445, 2003, 2743, 3367
Van91I	CCANNNNNTGG	1 cut(s)	3226
VneI	GTGCAC	1 cut(s)	2773
VpaK11BI	GGWCC	5 cut(s)	604, 1715, 1993, 2228, 3263
VspI	ATTAAT	1 cut(s)	2828
XapI	RAATTY	8 cut(s)	105, 223, 1025, 1055, 2081, 2580, 3067, 3190
XceI	RCATGY	4 cut(s)	489, 706, 1552, 2535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2230
XmiI	GTMKAC	2 cut(s)	3090, 3354
XmnI	GAANNNNTTC	2 cut(s)	1605, 1878
XspI	CTAG	3 cut(s)	228, 2871, 3183
ZrmI	AGTACT	3 cut(s)	1349, 2300, 3107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.