Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

5764781 .. 5770496

Gene Structure 5716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4539 bp

ATGGAGACAAAAGTTGGGAAGCAAAAGAAGAGAAGTGTTGACTCAAATGATGATGTCTCTAAGGAAAGGAGACCAAAGCGAGCAGCAGCTTGCAGAAACTTCAAGGAGAAACCTCTTCGTATCTCTGACAAATCTGAAACCGTTGAAGCTAAGAAAGAGCAGAACGTGGTGGAAGAGATCGTGGCGATACAGTTAACTTCTTCTTTGGAGAGCAATGATGATCCTCGTCCAAACCGGAGGCTGACTGATTTTGTTTTACATAATTCAGATGGAGTTCCACAGCCTGTGGAGATGTTGGAACTTGGTGACATTTTTCTTGAAGGTGTTGTCTTACCTTTAGGTGATGACAAAAACGAAGAAAAGGGTGTGAGGTTTCAATCTTTTGGTCGTGTCGAGAACTGGAATATATCTGGTTATGAAGATGGTTCCCCGGGGATATGGATATCAACAGCGTTAGCGGATTACGATTGCCGTAAACCAGCTTCTAAATACAAGAAAATATATGATTATTTCTTTGAGAAAGCTTGTGCTTGTGTGGAGGTGTTTAAGAGCTTGTCCAAGAATCCGGATACAAGTCTTGATGAGCTTCTTGCGGCGGTTGCGAGGTCGATGAGCGGAAGCAAGATATTTTCTAGCGGTGGAGCCATCCAAGAGTTTGTTATATCCCAAGGAGAATTCATATATAACCAACTCGCTGGTCTGGATGAGACAGCCAAGAATCATGAAACATGCTTTGTTGAAAATTCTGTTCTTGTTTCTCTAAGAGATCATGAAAGTAGTAAAATCCACAAGGCTTTGTCTAATGTGGCTCTGAGGATTGATGAGAGCCAGCTCGTGAAATCTGATCATTTAGTGGATGGTGCTGAGGCCGAGGATGTAAGATATGCTAAGTTAATCCAAGAAGAAGAGTATCGGATATCTATGGAGCGGTCGAGAAATAAGAGAAGTTCAACAACTTCTGCTTCGAATAAGTTTTACATTAAGATCAATGAACACGAGATTGCCAATGATTATCCACTCCCGTCTTACTACAAGAACACCAAAGAAGAAACAGATGAGCTTTTACTCTTTGAACCTGGCTATGAGGTAGATACAAGGGACCTACCTTGTAGAACACTTCACAATTGGGCTCTTTACAACTCTGATTCACGGATGATATCATTAGAGGTTCTTCCCATGAGGCCGTGTGCTGAAATCGATGTCACCGTATTTGGGTCAGGTGTGGTGGCTGAAGATGATGGAAGTGGGTTTTGTCTCGATGATTCAGAGAGCTCTACCTCTACGCAGTCAAATGTTCATGATGGGATGAACATATTCCTTAGTCAAATAAAGGAATGGATGATTGAGTTTGGAGCAGAAATGATCTTTGTCACATTACGAACTGACATGGCCTGGTATCGACTTGGGAAACCGTCAAAGCAATATGCTCCATGGTTTGAAACTGTTATGAAAACAGTAAGGGTTGCGATAAGCATTTTCAATATGCTCATGAGAGAAAGTAGGGTTGCTAAGCTTTCATATGCAAATGTCATAAAAAGACTTTGTGGGTTAGAGGAGAACGATAAAGCTTACATTTCTTCTAAGCTCTTGGATGTTGAGAGATATGTTGTCGTCCATGGACAAATTATCTTGCAGCTTTTCGAAGAGTATCCTGACAAGGATATCAAAAGGTGTCCATTTGTTACTGGTCTTGCAAGTAAAATGCAGGATATACACCACACAAAATGGATCATCAAGAGGAAGAAGAAAATTCTGCAAAAGGGAAAGAATCTGAATCCGAGGGCGGGCTTGGCACATGTGGTAACCAGAATGAAACCTATGCAAGCAACAACAACTCGCCTCGTTAATAGAATTTGGGGAGAGTTTTACTCCATTTACTCTCCTGAGGTTCCATCGGAGGCGATTCATGAAGTGGAAGAAGAGGAGATTGAAGAGGATGAAGAGGAGGACGAGAATGAGGAAGATGATATAGAGGAGGAAGCTGTTGAGGTTCAAAAGTCTCATACTCCTAAGAAAAGTAGAGGTAATTCTGAAGATATGGAGATAAAATGGAATGGTGAGATTCTTGGAGAAACTTCTGATGGTGAGCCTCTCTATGGAAGAGCCCTTGTTGGAGGGGAAACAGTGGCGGTAGGTAGTGCTGTCATATTAGAAGTTGATGATCCAGATGAAACTCCGGCGATCTATTTTGTGGAGTTCATGTTCGAGAGTTCAGATCAGTGCAAGATGCTACATGGGAAACTCTTACAAAGAGGATCTGAGACTGTTATAGGAACGGCTGCTAACGAGAGGGAACTGTTCTTGACTAATGAATGTCTTACTGTCCATCTTAAGGACATAAAAGGAACAGTAAGTCTCGATATTCGATCAAGGCCGTGGGGGCATCAGTATAGGAAAGAGAACCTCGTTGTGGATAAGCTTGACCGGGCAAGAGCAGAAGAAAGAAAAGCTAATGGTTTGCCAACAGAATACTACTGCAAAAGCTTGTACTCACCTGAGAGAGGTGGATTCTTTAGTCTTCCAAGGAATGATATTGGTCTTGGTTCTGGATTCTGTAGTTCGTGTAAGATAAAAGAGGAAGAAGAGGAAAGGTCCAAAACTAAACTCAACATCTCAAAGACAGGGGTTTTCTCCAATGGGATAGAGTATTATAATGGAGATTTTGTCTATGTACTCCCCAACTACATAACTAAAGATGGATTGAAGAAGGGTACTAGTAGAAGAACAACTCTTAAGTGTGGTCGGAACGTTGGGTTAAAAGCTTTTGTTGTTTGCCAATTGCTGGATGTTATTGTTCTAGAAGAATCTAGAAAAGCTAGTAATGCTTCATTTCAGGTTAAACTGACAAGGTTTTATAGGCCCGAGGACATTTCTGAAGAAAAGGCTTATGCTTCAGACATCCAAGAGTTGTATTATAGCCATGACACATATATTCTTCCTCCTGAGGCTCTACAAGGAAAATGTGAAGTAAGGAAGAAAAATGATATGCCCCTATGTCGTGAGTATCCAATATTAGATCATATCTTCTTCTGTGAAGTTTTCTATGATTCCTCTACTGGTTATCTCAAGCAGTTTCCAGCGAATATGAAGCTGAAGTTCTCTACTATTAAAGATGAAACACTTCTAAGAGAAAAGAAGGGGAAGGGAGTAGAGACTGGAACTAGTTCTGGAATTCTTATGAAGCCTGATGAGGTACCTAAAGAGATGCGTCTAGCTACACTAGATATTTTTGCTGGATGTGGTGGTCTATCTCATGGACTAGAAAAGGCTGGTGTATCTAATACAAAGTGGGCGATCGAGTATGAAGAGCCAGCTGGTCATGCGTTTAAACAAAACCATCCCGAAGCAACGGTTTTTGTTGACAACTGCAATGTCATTCTTAGGGCTATAATGGAGAAATGTGGAGATGTCGATGATTGTGTCTCTACTGTGGAGGCAGCTGAACTTGTAGCTAAACTTGATGAGAACCAAAAGAGTACCCTGCCACTTCCTGGTCAAGCGGATTTCATCAGCGGAGGGCCTCCATGCCAAGGGTTTTCTGGTATGAACAGGTTCAGTGACGGTTCGTGGAGTAAAGTACAGTGTGAAATGATATTAGCATTCTTGTCCTTTGCTGATTATTTCCGACCAAAGTATTTTCTTCTCGAGAACGTAAAGAAATTTGTGACATACAATAAAGGGAGAACATTTCAACTTACTATGGCTTCTCTTCTTGAAATAGGTTACCAAGTAAGATTTGGAATCTTGGAGGCAGGTACATATGGAGTTTCTCAGCCTCGTAAAAGAGTTATAATTTGGGCAGCTTCACCAGAAGAAGTTCTTCCAGAATGGCCTGAGCCGATGCATGTCTTTGATAATCCGGGTAGTAAAATCTCCTTACCTCGAGGTTTACATTATGATACTGTTCGTAATACTAAATTTGGCGCACCGTTCCGCTCAATCACGGTGAGAGACACAATCGGCGATCTTCCACTAGTAGAAAACGGAGAGTCCAAGATAAACAAAGAGTATAGAACTACTCCAGTCTCGTGGTTCCAAAAGAAGATAAGAGGAAACATGAGTGTTCTCACTGATCATATCTGCAAAGGGCTGAATGAACTAAACCTCATTCGATGTAAGAAAATCCCAAAGAGGCCTGGTGCTGATTGGCGTGACCTGCCGGACGAAAACGTGACATTATCAAATGGACTCGTGGAAAAACTGCGTCCTTTAGCTCTATCAAAGACAGCTAAAAACCACAACGAATGGAAGGGACTCTATGGTAGATTGGACTGGCAAGGAAACTTACCCATTTCCATCACCGATCCGCAGCCCATGGGTAAGGTGGGAATGTGCTTCCATCCAGAACAGGACAGAATTATCACTGTCCGTGAATGCGCCCGATCTCAGGGGTTTCCGGATAGCTATGAGTTTTCAGGGACGACAAAACACAAACATAGGCAGATTGGAAATGCAGTCCCTCCACCATTGGCATTCGCTCTCGGTCGGAAGCTCAAAGAAGCCCTATATCTCAAGAGTTCTCTTCAACACCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

1512

Amino Acids

171.15

Weight (kDa)

5.79

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNMT1-RFD	PF12047	74 - 202	5.5e-36	Cytosine specific DNA methyltransferase replication foci domain
DNMT1-RFD	PF12047	366 - 516	2.4e-45	Cytosine specific DNA methyltransferase replication foci domain
BAH	PF01426	707 - 841	3.5e-24	BAH domain
BAH	PF01426	881 - 1026	6.1e-27	BAH domain
DNA_methylase	PF00145	1072 - 1121	7.1e-07	C-5 cytosine-specific DNA methylase
DNA_methylase	PF00145	1156 - 1499	1.6e-43	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2652, 3791
AbsI	CCTCGAGG	1 cut(s)	3882
Acc36I	ACCTGC	2 cut(s)	3743, 4164
Acc65I	GGTACC	1 cut(s)	3193
AccB1I	GGYRCC	1 cut(s)	3193
AccB7I	CCANNNNNTGG	2 cut(s)	2782, 3491
AccBSI	CCGCTC	3 cut(s)	615, 928, 3936
AccIII	TCCGGA	2 cut(s)	565, 4396
AclI	AACGTT	1 cut(s)	2748
AclWI	GGATC	5 cut(s)	215, 1736, 2156, 2263, 4298
AcsI	RAATTY	7 cut(s)	674, 742, 1749, 1851, 3171, 3659, 3917
AcuI	CTGAAG	5 cut(s)	1251, 2052, 2877, 2895, 3113
AfaI	GTAC	7 cut(s)	2489, 2673, 2713, 3195, 3478, 3579, 3757
AflII	CTTAAG	2 cut(s)	2330, 2732
AflIII	ACRYGT	1 cut(s)	1795
AhlI	ACTAGT	3 cut(s)	2714, 3161, 3973
AjnI	CCWGG	4 cut(s)	1075, 1391, 3490, 4135
AloI	GAACNNNNNNTCC	2 cut(s)	2186, 2218
Alw21I	GWGCWC	1 cut(s)	1274
AlwI	GGATC	5 cut(s)	215, 1736, 2156, 2263, 4298
Ama87I	CYCGRG	4 cut(s)	430, 2861, 3644, 3882
Aor13HI	TCCGGA	2 cut(s)	565, 4396
AoxI	GGCC	8 cut(s)	867, 1181, 1389, 2372, 2858, 3518, 3830, 4133
ApeKI	GCWGC	7 cut(s)	83, 86, 1633, 2279, 3437, 3800, 4309
ApoI	RAATTY	7 cut(s)	674, 742, 1749, 1851, 3171, 3659, 3917
Asp700I	GAANNNNTTC	6 cut(s)	1313, 3120, 3163, 3551, 3816, 3819
Asp718I	GGTACC	1 cut(s)	3193
AspLEI	GCGC	2 cut(s)	3926, 4379
AspS9I	GGNCC	4 cut(s)	1099, 2592, 2859, 3518
AsuC2I	CCSGG	4 cut(s)	431, 432, 2426, 3861
AsuHPI	GGTGA	9 cut(s)	317, 353, 1195, 2069, 2096, 2484, 3798, 3958, 4291
AsuII	TTCGAA	2 cut(s)	965, 1641
AvaI	CYCGRG	4 cut(s)	430, 2861, 3644, 3882
AvaII	GGWCC	2 cut(s)	1099, 2592
AxyI	CCTNAGG	2 cut(s)	1884, 2943
BanI	GGYRCC	1 cut(s)	3193
BanII	GRGCYC	3 cut(s)	1132, 1274, 2107
BarI	GAAGNNNNNNTAC	2 cut(s)	466, 498
BauI	CACGAG	4 cut(s)	833, 995, 4027, 4190
BbsI	GAAGAC	1 cut(s)	2510
Bbv12I	GWGCWC	1 cut(s)	1274
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	7 cut(s)	95, 98, 1645, 2266, 3449, 3812, 4321
BceAI	ACGGC	4 cut(s)	456, 1168, 2292, 2359
BciT130I	CCWGG	4 cut(s)	1077, 1393, 3492, 4137
BciVI	GTATCC	3 cut(s)	562, 1659, 3015
BclI	TGATCA	2 cut(s)	844, 4072
BcnI	CCSGG	4 cut(s)	431, 432, 2426, 3861
BcuI	ACTAGT	3 cut(s)	2714, 3161, 3973
BfmI	CTRYAG	1 cut(s)	2554
BfrI	CTTAAG	2 cut(s)	2330, 2732
BfuAI	ACCTGC	2 cut(s)	3743, 4164
BfuI	GTATCC	3 cut(s)	562, 1659, 3015
BglI	GCCNNNNNGGC	1 cut(s)	2380
BisI	GCNGC	8 cut(s)	84, 87, 594, 1634, 2280, 3438, 3801, 4310
BlpI	GCTNAGC	1 cut(s)	1509
BlsI	GCNGC	8 cut(s)	85, 88, 595, 1635, 2281, 3439, 3802, 4311
Bme1390I	CCNGG	8 cut(s)	431, 432, 1077, 1393, 2426, 3492, 3861, 4137
Bme18I	GGWCC	2 cut(s)	1099, 2592
BmeT110I	CYCGRG	4 cut(s)	430, 2861, 3644, 3882
BmgT120I	GGNCC	4 cut(s)	1099, 2592, 2859, 3518
BmiI	GGNNCC	6 cut(s)	427, 643, 1100, 1890, 3195, 4034
BmrFI	CCNGG	8 cut(s)	431, 432, 1077, 1393, 2426, 3492, 3861, 4137
BmsI	GCATC	4 cut(s)	2217, 2392, 3195, 3831
BpiI	GAAGAC	1 cut(s)	2510
BplI	GAGNNNNNCTC	2 cut(s)	1853, 1885
BpmI	CTGGAG	1 cut(s)	4005
Bpu10I	CCTNAGC	2 cut(s)	864, 3834
Bpu1102I	GCTNAGC	1 cut(s)	1509
Bpu14I	TTCGAA	2 cut(s)	965, 1641
BpuEI	CTTGAG	2 cut(s)	3050, 4496
BpuMI	CCSGG	4 cut(s)	431, 432, 2426, 3861
Bsa29I	ATCGAT	1 cut(s)	1197
BsaI	GGTCTC	1 cut(s)	64
BsaWI	WCCGGW	3 cut(s)	234, 565, 4396
BsaXI	ACNNNNNCTCC	4 cut(s)	2186, 2216, 2649, 2679
Bse1I	ACTGG	6 cut(s)	404, 1690, 3061, 3160, 4022, 4277
Bse21I	CCTNAGG	2 cut(s)	1884, 2943
Bse3DI	GCAATG	2 cut(s)	220, 3376
BseAI	TCCGGA	2 cut(s)	565, 4396
BseBI	CCWGG	4 cut(s)	1077, 1393, 3492, 4137
BseCI	ATCGAT	1 cut(s)	1197
BseMI	GCAATG	2 cut(s)	220, 3376
BseMII	CTCAG	9 cut(s)	803, 855, 1875, 2250, 2487, 2934, 3785, 3825, 4400
BseNI	ACTGG	6 cut(s)	404, 1690, 3061, 3160, 4022, 4277
BseRI	GAGGAG	4 cut(s)	1568, 1937, 1958, 1988
BseXI	GCAGC	7 cut(s)	95, 98, 1645, 2266, 3449, 3812, 4321
Bsh1285I	CGRYCG	3 cut(s)	932, 3297, 4486
BshFI	GGCC	8 cut(s)	869, 1183, 1391, 2374, 2860, 3520, 3832, 4135
BshNI	GGYRCC	1 cut(s)	3193
BshVI	ATCGAT	1 cut(s)	1197
BsiEI	CGRYCG	3 cut(s)	932, 3297, 4486
BsiHKAI	GWGCWC	1 cut(s)	1274
BsiHKCI	CYCGRG	4 cut(s)	430, 2861, 3644, 3882
BsiSI	CCGG	8 cut(s)	235, 431, 566, 2177, 2425, 3860, 4160, 4397
BslFI	GGGAC	4 cut(s)	1112, 4266, 4432, 4442
BsmFI	GGGAC	4 cut(s)	1112, 4266, 4432, 4442
BsmI	GAATGC	3 cut(s)	3599, 4379, 4472
BsnI	GGCC	8 cut(s)	869, 1183, 1391, 2374, 2860, 3520, 3832, 4135
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	4 cut(s)	430, 2861, 3644, 3882
Bsp119I	TTCGAA	2 cut(s)	965, 1641
Bsp1286I	GDGCHC	3 cut(s)	1132, 1274, 2107
Bsp13I	TCCGGA	2 cut(s)	565, 4396
Bsp1720I	GCTNAGC	1 cut(s)	1509
Bsp19I	CCATGG	3 cut(s)	1430, 1615, 4314
BspANI	GGCC	8 cut(s)	869, 1183, 1391, 2374, 2860, 3520, 3832, 4135
BspCNI	CTCAG	9 cut(s)	804, 856, 1876, 2251, 2488, 2935, 3784, 3826, 4399
BspDI	ATCGAT	1 cut(s)	1197
BspEI	TCCGGA	2 cut(s)	565, 4396
BspHI	TCATGA	5 cut(s)	721, 769, 1297, 1488, 1906
BspLI	GGNNCC	6 cut(s)	427, 643, 1100, 1890, 3195, 4034
BspMI	ACCTGC	2 cut(s)	3743, 4164
BspPI	GGATC	5 cut(s)	215, 1736, 2156, 2263, 4298
BspQI	GCTCTTC	2 cut(s)	2095, 3300
BspT104I	TTCGAA	2 cut(s)	965, 1641
BspT107I	GGYRCC	1 cut(s)	3193
BspTI	CTTAAG	2 cut(s)	2330, 2732
BspTNI	GGTCTC	1 cut(s)	64
BsrBI	CCGCTC	3 cut(s)	615, 928, 3936
BsrDI	GCAATG	2 cut(s)	220, 3376
BsrI	ACTGG	6 cut(s)	404, 1690, 3061, 3160, 4022, 4277
BssSI	CACGAG	4 cut(s)	833, 995, 4027, 4190
BssT1I	CCWWGG	6 cut(s)	667, 1430, 1615, 2522, 3529, 4314
Bst2BI	CACGAG	4 cut(s)	833, 995, 4027, 4190
Bst2UI	CCWGG	4 cut(s)	1077, 1393, 3492, 4137
BstAFI	CTTAAG	2 cut(s)	2330, 2732
BstBI	TTCGAA	2 cut(s)	965, 1641
BstC8I	GCNNGC	6 cut(s)	81, 91, 830, 1786, 1824, 3312
BstDSI	CCRYGG	4 cut(s)	1430, 1615, 2375, 4314
BstEII	GGTNACC	2 cut(s)	1801, 3722
BstENI	CCTNNNNNAGG	1 cut(s)	2499
BstHHI	GCGC	2 cut(s)	3926, 4379
BstMCI	CGRYCG	3 cut(s)	932, 3297, 4486
BstMWI	GCNNNNNNNGC	6 cut(s)	599, 1790, 2380, 2822, 3320, 4156
BstNI	CCWGG	4 cut(s)	1077, 1393, 3492, 4137
BstNSI	RCATGY	3 cut(s)	732, 1799, 3848
BstPI	GGTNACC	2 cut(s)	1801, 3722
BstSCI	CCNGG	8 cut(s)	429, 430, 1075, 1391, 2424, 3490, 3859, 4135
BstSFI	CTRYAG	1 cut(s)	2554
BstV1I	GCAGC	7 cut(s)	95, 98, 1645, 2266, 3449, 3812, 4321
BstV2I	GAAGAC	1 cut(s)	2510
BstX2I	RGATCY	1 cut(s)	2255
BstXI	CCANNNNNNTGG	2 cut(s)	695, 4029
BstYI	RGATCY	1 cut(s)	2255
Bsu15I	ATCGAT	1 cut(s)	1197
Bsu36I	CCTNAGG	2 cut(s)	1884, 2943
BsuI	GTATCC	3 cut(s)	562, 1659, 3015
BsuRI	GGCC	8 cut(s)	869, 1183, 1391, 2374, 2860, 3520, 3832, 4135
BsuTUI	ATCGAT	1 cut(s)	1197
BtgI	CCRYGG	4 cut(s)	1430, 1615, 2375, 4314
BtsIMutI	CAGTG	6 cut(s)	2130, 2225, 3562, 3587, 4068, 4362
BveI	ACCTGC	2 cut(s)	3743, 4164
Cac8I	GCNNGC	6 cut(s)	81, 91, 830, 1786, 1824, 3312
CciI	TCATGA	5 cut(s)	721, 769, 1297, 1488, 1906
CfoI	GCGC	2 cut(s)	3926, 4379
Cfr13I	GGNCC	4 cut(s)	1099, 2592, 2859, 3518
Cfr9I	CCCGGG	1 cut(s)	430
ClaI	ATCGAT	1 cut(s)	1197
CseI	GACGC	2 cut(s)	3197, 4193
Csp6I	GTAC	7 cut(s)	2488, 2672, 2712, 3194, 3477, 3578, 3756
CviQI	GTAC	7 cut(s)	2488, 2672, 2712, 3194, 3477, 3578, 3756
DraI	TTTAAA	1 cut(s)	3328
Ecl136II	GAGCTC	1 cut(s)	1272
Eco130I	CCWWGG	6 cut(s)	667, 1430, 1615, 2522, 3529, 4314
Eco147I	AGGCCT	1 cut(s)	4135
Eco24I	GRGCYC	3 cut(s)	1132, 1274, 2107
Eco31I	GGTCTC	1 cut(s)	64
Eco32I	GATATC	4 cut(s)	444, 918, 1158, 1663
Eco47I	GGWCC	2 cut(s)	1099, 2592
Eco53kI	GAGCTC	1 cut(s)	1272
Eco57I	CTGAAG	5 cut(s)	1251, 2052, 2877, 2895, 3113
Eco81I	CCTNAGG	2 cut(s)	1884, 2943
Eco88I	CYCGRG	4 cut(s)	430, 2861, 3644, 3882
Eco91I	GGTNACC	2 cut(s)	1801, 3722
EcoICRI	GAGCTC	1 cut(s)	1272
EcoNI	CCTNNNNNAGG	1 cut(s)	2499
EcoO109I	RGGNCCY	2 cut(s)	1099, 3518
EcoO65I	GGTNACC	2 cut(s)	1801, 3722
EcoRI	GAATTC	2 cut(s)	674, 3171
EcoRII	CCWGG	4 cut(s)	1075, 1391, 3490, 4135
EcoRV	GATATC	4 cut(s)	444, 918, 1158, 1663
EcoT14I	CCWWGG	6 cut(s)	667, 1430, 1615, 2522, 3529, 4314
EcoT22I	ATGCAT	1 cut(s)	3846
EcoT38I	GRGCYC	3 cut(s)	1132, 1274, 2107
ErhI	CCWWGG	6 cut(s)	667, 1430, 1615, 2522, 3529, 4314
FalI	AAGNNNNNCTT	2 cut(s)	3804, 3836
FaqI	GGGAC	4 cut(s)	1112, 4266, 4432, 4442
FauI	CCCGC	1 cut(s)	1777
FauNDI	CATATG	2 cut(s)	1519, 3760
FbaI	TGATCA	2 cut(s)	844, 4072
Fnu4HI	GCNGC	8 cut(s)	84, 87, 594, 1634, 2280, 3438, 3801, 4310
FriOI	GRGCYC	3 cut(s)	1132, 1274, 2107
Fsp4HI	GCNGC	8 cut(s)	84, 87, 594, 1634, 2280, 3438, 3801, 4310
GlaI	GCGC	2 cut(s)	3925, 4378
GluI	GCNGC	8 cut(s)	84, 87, 594, 1634, 2280, 3438, 3801, 4310
GsuI	CTGGAG	1 cut(s)	4005
HaeIII	GGCC	8 cut(s)	869, 1183, 1391, 2374, 2860, 3520, 3832, 4135
HapII	CCGG	8 cut(s)	235, 431, 566, 2177, 2425, 3860, 4160, 4397
HgaI	GACGC	2 cut(s)	3197, 4193
HhaI	GCGC	2 cut(s)	3926, 4379
Hin6I	GCGC	2 cut(s)	3924, 4377
HinP1I	GCGC	2 cut(s)	3924, 4377
HincII	GTYRAC	3 cut(s)	40, 195, 3361
HindII	GTYRAC	3 cut(s)	40, 195, 3361
HindIII	AAGCTT	6 cut(s)	522, 1511, 1566, 2417, 2482, 2760
HpaI	GTTAAC	1 cut(s)	195
HpaII	CCGG	8 cut(s)	235, 431, 566, 2177, 2425, 3860, 4160, 4397
HphI	GGTGA	9 cut(s)	317, 353, 1195, 2069, 2096, 2484, 3798, 3958, 4291
Hpy166II	GTNNAC	5 cut(s)	40, 195, 476, 3361, 3890
Hpy8I	GTNNAC	5 cut(s)	40, 195, 476, 3361, 3890
HpyAV	CCTTC	5 cut(s)	314, 2701, 3130, 3136, 4243
HpyCH4IV	ACGT	4 cut(s)	165, 2748, 3651, 4170
HpyF10VI	GCNNNNNNNGC	6 cut(s)	599, 1790, 2380, 2822, 3320, 4156
HpySE526I	ACGT	4 cut(s)	165, 2748, 3651, 4170
HspAI	GCGC	2 cut(s)	3924, 4377
Kpn2I	TCCGGA	2 cut(s)	565, 4396
KpnI	GGTACC	1 cut(s)	3197
Ksp22I	TGATCA	2 cut(s)	844, 4072
KspAI	GTTAAC	1 cut(s)	195
LguI	GCTCTTC	2 cut(s)	2095, 3300
LmnI	GCTCC	4 cut(s)	641, 925, 1352, 1432
Lsp1109I	GCAGC	7 cut(s)	95, 98, 1645, 2266, 3449, 3812, 4321
LweI	GCATC	4 cut(s)	2217, 2392, 3195, 3831
MaeII	ACGT	4 cut(s)	165, 2748, 3651, 4170
MbiI	CCGCTC	3 cut(s)	615, 928, 3936
MfeI	CAATTG	2 cut(s)	1123, 2777
MflI	RGATCY	1 cut(s)	2255
MhlI	GDGCHC	3 cut(s)	1132, 1274, 2107
MlyI	GAGTC	4 cut(s)	35, 3998, 4182, 4248
MmeI	TCCRAC	5 cut(s)	276, 2092, 2723, 3649, 4466
Mph1103I	ATGCAT	1 cut(s)	3846
MroI	TCCGGA	2 cut(s)	565, 4396
MroXI	GAANNNNTTC	6 cut(s)	1313, 3120, 3163, 3551, 3816, 3819
MspA1I	CMGCKG	3 cut(s)	3314, 3440, 3513
MspCI	CTTAAG	2 cut(s)	2330, 2732
MspI	CCGG	8 cut(s)	235, 431, 566, 2177, 2425, 3860, 4160, 4397
MspR9I	CCNGG	8 cut(s)	431, 432, 1077, 1393, 2426, 3492, 3861, 4137
MssI	GTTTAAAC	1 cut(s)	3328
MunI	CAATTG	2 cut(s)	1123, 2777
Mva1269I	GAATGC	3 cut(s)	3599, 4379, 4472
MvaI	CCWGG	4 cut(s)	1077, 1393, 3492, 4137
MwoI	GCNNNNNNNGC	6 cut(s)	599, 1790, 2380, 2822, 3320, 4156
NciI	CCSGG	4 cut(s)	431, 432, 2426, 3861
NcoI	CCATGG	3 cut(s)	1430, 1615, 4314
NdeI	CATATG	2 cut(s)	1519, 3760
NlaIV	GGNNCC	6 cut(s)	427, 643, 1100, 1890, 3195, 4034
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	7 cut(s)	305, 1201, 1369, 3557, 3664, 4151, 4171
NsiI	ATGCAT	1 cut(s)	3846
NspI	RCATGY	3 cut(s)	732, 1799, 3848
NspV	TTCGAA	2 cut(s)	965, 1641
PaeR7I	CTCGAG	2 cut(s)	3644, 3882
PagI	TCATGA	5 cut(s)	721, 769, 1297, 1488, 1906
PceI	AGGCCT	1 cut(s)	4135
PciI	ACATGT	1 cut(s)	1795
PciSI	GCTCTTC	2 cut(s)	2095, 3300
PcsI	WCGNNNNNNNCGW	1 cut(s)	1203
PctI	GAATGC	3 cut(s)	3599, 4379, 4472
PdmI	GAANNNNTTC	6 cut(s)	1313, 3120, 3163, 3551, 3816, 3819
PflMI	CCANNNNNTGG	2 cut(s)	2782, 3491
PkrI	GCNGC	8 cut(s)	85, 88, 595, 1635, 2281, 3439, 3802, 4311
Ple19I	CGATCG	1 cut(s)	3297
PleI	GAGTC	4 cut(s)	35, 3997, 4182, 4248
PmeI	GTTTAAAC	1 cut(s)	3328
PpsI	GAGTC	4 cut(s)	35, 3997, 4182, 4248
PpuMI	RGGWCCY	1 cut(s)	1099
PscI	ACATGT	1 cut(s)	1795
PsiI	TTATAA	2 cut(s)	2652, 3791
Psp124BI	GAGCTC	1 cut(s)	1274
Psp1406I	AACGTT	1 cut(s)	2748
Psp5II	RGGWCCY	1 cut(s)	1099
Psp6I	CCWGG	4 cut(s)	1075, 1391, 3490, 4135
PspEI	GGTNACC	2 cut(s)	1801, 3722
PspGI	CCWGG	4 cut(s)	1075, 1391, 3490, 4135
PspN4I	GGNNCC	6 cut(s)	427, 643, 1100, 1890, 3195, 4034
PspPI	GGNCC	4 cut(s)	1099, 2592, 2859, 3518
PspPPI	RGGWCCY	1 cut(s)	1099
PspXI	VCTCGAGB	1 cut(s)	3882
PsuI	RGATCY	1 cut(s)	2255
PvuI	CGATCG	1 cut(s)	3297
PvuII	CAGCTG	2 cut(s)	3314, 3440
RsaI	GTAC	7 cut(s)	2489, 2673, 2713, 3195, 3478, 3579, 3757
RsaNI	GTAC	7 cut(s)	2488, 2672, 2712, 3194, 3477, 3578, 3756
SacI	GAGCTC	1 cut(s)	1274
SapI	GCTCTTC	2 cut(s)	2095, 3300
SatI	GCNGC	8 cut(s)	84, 87, 594, 1634, 2280, 3438, 3801, 4310
Sau96I	GGNCC	4 cut(s)	1099, 2592, 2859, 3518
SchI	GAGTC	4 cut(s)	35, 3998, 4182, 4248
ScrFI	CCNGG	8 cut(s)	431, 432, 1077, 1393, 2426, 3492, 3861, 4137
SduI	GDGCHC	3 cut(s)	1132, 1274, 2107
SfaNI	GCATC	4 cut(s)	2217, 2392, 3195, 3831
SfcI	CTRYAG	1 cut(s)	2554
Sfr274I	CTCGAG	2 cut(s)	3644, 3882
SfuI	TTCGAA	2 cut(s)	965, 1641
SinI	GGWCC	2 cut(s)	1099, 2592
SlaI	CTCGAG	2 cut(s)	3644, 3882
SmaI	CCCGGG	1 cut(s)	432
SmlI	CTYRAG	6 cut(s)	2330, 2732, 3065, 3644, 3882, 4511
SmoI	CTYRAG	6 cut(s)	2330, 2732, 3065, 3644, 3882, 4511
SpeI	ACTAGT	3 cut(s)	2714, 3161, 3973
SseBI	AGGCCT	1 cut(s)	4135
SspI	AATATT	1 cut(s)	3012
SstI	GAGCTC	1 cut(s)	1274
StuI	AGGCCT	1 cut(s)	4135
StyD4I	CCNGG	8 cut(s)	429, 430, 1075, 1391, 2424, 3490, 3859, 4135
StyI	CCWWGG	6 cut(s)	667, 1430, 1615, 2522, 3529, 4314
TaiI	ACGT	4 cut(s)	168, 2751, 3654, 4173
TaqII	GACCGA	1 cut(s)	4472
TatI	WGTACW	3 cut(s)	2487, 2671, 3577
TauI	GCSGC	1 cut(s)	596
TscAI	CASTG	6 cut(s)	2130, 2225, 3562, 3587, 4075, 4369
TseFI	GTSAC	7 cut(s)	305, 1201, 1369, 3557, 3664, 4151, 4171
TseI	GCWGC	7 cut(s)	83, 86, 1633, 2279, 3437, 3800, 4309
Tsp45I	GTSAC	7 cut(s)	305, 1201, 1369, 3557, 3664, 4151, 4171
TspGWI	ACGGA	3 cut(s)	1165, 3999, 4358
TspMI	CCCGGG	1 cut(s)	430
TspRI	CASTG	6 cut(s)	2130, 2225, 3562, 3587, 4075, 4369
Van91I	CCANNNNNTGG	2 cut(s)	2782, 3491
Vha464I	CTTAAG	2 cut(s)	2330, 2732
VpaK11BI	GGWCC	2 cut(s)	1099, 2592
XagI	CCTNNNNNAGG	1 cut(s)	2499
XapI	RAATTY	7 cut(s)	674, 742, 1749, 1851, 3171, 3659, 3917
XbaI	TCTAGA	2 cut(s)	2797, 2807
XceI	RCATGY	3 cut(s)	732, 1799, 3848
XcmI	CCANNNNNNNNNTGG	3 cut(s)	3536, 3734, 4321
XhoI	CTCGAG	2 cut(s)	3644, 3882
XmaI	CCCGGG	1 cut(s)	430
XmnI	GAANNNNTTC	6 cut(s)	1313, 3120, 3163, 3551, 3816, 3819
Zsp2I	ATGCAT	1 cut(s)	3846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.