Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

19932114 .. 19938470

Gene Structure 6357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4605 bp

ATGGTGGAAAATGGGGCTAAAGCTGCGAAGCGAAAGAAGAGACCACTTCCAGAGATTCAAGAGGTAGAAGATGTACCTAGGACGAGGAGACCAAGGCGTGCTGCAGCGTGTACCAGTTTCAAGGAGAAATCTATTCGAGTCTGTGAGAAATCTGCTACTATTGAAGTAAAGAAACAGCAGATTGTGGAGGAAGAGTTTCTCGCGTTACGGTTAACGGCTCTGGAAACTGATGTTGAAGATCGTCCAACCAGGAGACTGAATGATTTTGTTTTGTTTGATTCAGATGGAGTTCCACAACCTCTGGAGATGTTGGAGATTCATGACATATTCGTTTCAGGTGCTATCTTACCTTCAGATGTGTGTACTGATAAGGAGAAAGAGAAGGGTGTGAGGTGTACATCGTTTGGACGGGTTGAGCATTGGAGTATCTCTGGTTATGAAGATGGTTCCCCTGTTATTTGGATCTCAACGGAATTGGCGGATTATGATTGTCGTAAACCTGCTGCTAGCTACAGGAAGGTTTATGATTACTTCTATGAGAAAGCTCGTGCTTCAGTGGCTGTGTATAAGAAATTGTCCAAGTCATCTGGTGGGGATCCTGATATAGGTCTTGAGGAGTTACTTGCGGCGGTTGTCAGATCAATGAGCAGTGGAAGCAAGTACTTTTCTAGTGGTGCGGCAATCATCGATTTTGTTATATCCCAGGGAGATTTTATATATAACCAACTCGCTGGTTTGGATGAGACAGCCAAGAAACATGAATCAAGCTATGTTGAGATTCCTGTTCTTGTAGCTCTCAGAGAGAAGAGTAGTAAGATTGACAAGCCTCTGCAGAGGGAAAGAAACCCATCTAATGGTGTGAGGATTAAAGAAGTTTCTCAAGTTGCGGAGAGCGAGGCCTTGACATCTGATCAACTGGTTGATGGTACTGATGATGACAGAAGATATGCTATACTCTTACAAGACGAAGAGAATAGGAAATCTATGCAACAGCCCAGAAAAAACAGCAGCTCAGGTTCTGCTTCAAATATGTTCTACATTAAGATAAATGAAGATGAGATTGCCAATGATTATCCTCTCCCATCGTACTATAAGACCTCCGAAGAAGAAACAGATGAACTTATACTTTATGATGCTTCCTATGAGGTTCAATCTGAACACCTGCCTCACAGGATGCTTCACAACTGGGCTCTTTATAACTCTGATTTACGATTCATATCACTGGAACTTCTACCGATGAAACAATGTGATGATATTGATGTCAACATTTTTGGGTCAGGTGTGGTGACTGATGATAATGGAAGTTGGATTTCTTTAAACGATCCTGACAGCGGTTCTCAGTCACACGATCCTGATGGGATGTGCATATTCCTCAGTCAAATTAAAGAATGGATGATTGAGTTTGGGAGCGATGATATTATCTCCATTTCTATACGAACAGATGTGGCCTGGTACCGTCTTGGGAAACCATCAAAACTTTATGCCCCTTGGTGGAAACCTGTTCTGAAAACAGCAAGGGTTGGGATAAGCATTCTTACTTTTCTTAGGGTGGAAAGTAGGGTTGCTAGGCTTTCATTTGCAGATGTCACAAAAAGACTGTCTGGGTTACAGGCGAATGATAAAGCTTACATTTCTTCTGACCCCTTGGCTGTTGAGAGATATTTGGTCGTCCATGGGCAAATTATTTTACAGCTTTTTGCAGTTTATCCGGACGACAATGTCAAAAGGTGTCCATTTGTTGTTGGTCTTGCAAGCAAATTGGAGGATAGGCACCACACAAAATGGATCATCAAGAAGAAGAAAATTTCGCTGAAGGAACTGAATCTGAATCCAAGGGCAGGCATGGCACCAGTAGCATCGAAGAGGAAAGCTATGCAAGCAACAACAACTCGCCTGGTCAACAGAATTTGGGGAGAGTTTTACTCCAATTACTCTCCAGAGGATCCATTGCAGGCGACTGCTGCAGAAAATGGGGAGGATGAGGTGGAAGAGGAAGGCGGAAATGGGGAGGAAGAGGTTGAAGAGGAAGGTGAAAATGGTCTCACAGAGGACACTGTACCAGAACCTGTTGAGGTTCAGAAGCCTCATACTCCTAAGAAAATCCGAGGCAGTTCTGGAAAAAGGGAAATAAAATGGGATGGTGAGAGTCTAGGAAAAACTTCTGCTGGCGAGCCTCTCTATCAACAAGCCCTTGTTGGAGGGGAAATGGTGGCTGTAGGTGGCGCTGTCACCTTGGAAGTTGATGATCCAGATGAAATGCCGGCCATCTATTTTGTGGAGTACATGTTCGAAAGTACAGATCACTGCAAAATGTTACATGGTAGATTCTTACAAAGAGGATCTATGACTGTTCTGGGGAATGCTGCTAACGAGAGGGAACTATTCCTGACTAATGAATGCATGACTACACAGCTCAAGGACATTAAAGGAGTAGCCAGTTTTGAGATTCGATCAAGGCCATGGGGGCATCAGTATAGGAAAAAGAACATCACTGCGGATAAGCTTGACTGGGCTAGAGCATTAGAAAGAAAAGTAAAAGATTTGCCAACAGAGTATTACTGCAAAAGCTTGTACTCACCTGAGAGAGGGGGATTCTTTAGTCTTCCACTAAGTGATATTGGTCGCAGTTCTGGGTTCTGCACTTCATGTAAGATAAGGGAGGATGAAGAGAAGAGGTCTACAATTAAACTAAATGTTTCAAAGACAGGCTTTTTCATCAATGGGATTGAGTATTCTGTTGAGGATTTTGTCTATGTCAACCCTGACTCTATTGGTGGGTTGAAGGAGGGTAGTAAAACTTCTTTTAAGTCTGGGCGAAACATTGGGTTAAGAGCGTATGTTGTTTGCCAATTGCTGGAAATTGTTCCAAAGGAATCTAGAAAGGCTGATTTGGGTTCCTTTGATGTTAAAGTGAGAAGGTTTTATAGGCCTGAGGATGTTTCTGCAGAGAAGGCCTATGCTTCAGACATCCAAGAATTGTATTTCAGCCAGGACACAGTTGTTCTCCCTCCAGGTGCTCTAGAGGGAAAATGTGAAGTAAGAAAGAAAAGTGATATGCCCTTATCCCGTGAATATCCAATATCAGACCATATTTTCTTCTGTGATCTTTTCTTTGACACCTCCAAAGGTTCTCTCAAGCAGCTGCCCGCCAATATGAAGCCAAAGTTCTCTACTATTAAGGACGACACACTTTTAAGAAAGAAAAAGGGAAAGGGAGTAGAGAGTGAAATTGAGTCTGAGATTGTCAAGCCTGTTGAGCCACCTAAAGAGATTCGTCTGGCTACTCTAGATATTTTTGCTGGTTGTGGTGGCCTGTCTCATGGACTGAAAAAGGCGGGTGTATCTGATGCAAAGTGGGCGATTGAGTATGAAGAGCCAGCTGGGCAGGCTTTTAAACAAAACCATCCTGAGTCAACAGTTTTTGTTGACAACTGCAATGTGATTCTTAGGGCTATAATGGAGAAAGGTGGAGATCAAGATGATTGTGTCTCTACTACAGAGGCAAATGAATTAGCAGCTAAACTAACTGAGGAGCAGAAGAGTACTCTGCCACTGCCTGGTCAAGTGGACTTCATCAATGGTGGACCTCCATGTCAGGGATTTTCTGGTATGAACAGGTTCAACCAAAGCTCTTGGAGTAAAGTTCAGTGTGAAATGATATTAGCATTCTTGTCCTTTGCTGACTATTTCCGGCCAAGGTATTTTCTTCTGGAGAACGTGAGGACCTTTGTGTCATTCAATAAAGGGCAGACATTTCAGCTTACTTTGGCTTCCCTTCTCGAAATGGGTTACCAGGTGAGATTTGGAATCCTGGAGGCCGGTGCATATGGAGTATCCCAATCTCGTAAACGAGCTTTCATTTGGGCTGCTGCACCAGAAGAAGTTCTCCCTGAATGGCCTGAGCCGATGCATGTCTTTGGTGTTCCAAAGTTGAAAATCTCACTATCTCAAGGTTTACATTATGCTGCTGTTCGTAGTACTGCACTTGGTGCCCCTTTCCGTCCAATCACCGTGAGAGACACAATTGGTGATCTTCCATCAGTAGAAAACGGAGACTCTAGGACAAACAAAGAGTATAAAGAGGTTGCAGTCTCGTGGTTCCAAAAGGAGATAAGAGGAAACACGATTGCTCTCACTGATCATATCTGCAAGGCTATGAATGAGCTTAACCTCATTCGATGCAAATTAATCCCAACTAGGCCTGGGGCTGATTGGCATGACTTGCCAAAGAGAAAGGTTACGTTATCTGATGGGCGCGTAGAAGAAATGATTCCTTTTTGTCTCCCAAACACAGCTGAGCGCCACAACGGTTGGAAGGGACTATATGGGAGATTAGATTGGCAAGGAAACTTTCCGACTTCCGTCACGGATCCTCAGCCCATGGGTAAGGTTGGAATGTGCTTTCATCCTGAACAGCACAGAATCCTTACAGTCCGTGAATGCGCCCGATCTCAGGGGTTTCCGGATAGCTACGAGTTTGCAGGGAACATAAATCACAAGCACAGGCAGATTGGGAATGCAGTCCCTCCACCATTGGCATTTGCTCTAGGTCGTAAGCTCAAAGAAGCCCTACATCTCAAGAAGTCTCCTCAACACCAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

1534

Amino Acids

172.43

Weight (kDa)

5.97

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNMT1-RFD	PF12047	79 - 214	1.1e-44	Cytosine specific DNA methyltransferase replication foci domain
DNMT1-RFD	PF12047	386 - 534	1.1e-32	Cytosine specific DNA methyltransferase replication foci domain
BAH	PF01426	735 - 869	6.6e-27	BAH domain
BAH	PF01426	909 - 1049	1.2e-27	BAH domain
DNA_methylase	PF00145	1094 - 1143	1.1e-06	C-5 cytosine-specific DNA methylase
DNA_methylase	PF00145	1175 - 1521	8.1e-44	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1197
AarI	CACCTGC	1 cut(s)	1170
AasI	GACNNNNNNGTC	3 cut(s)	1718, 3591, 3730
Acc36I	ACCTGC	2 cut(s)	508, 1170
Acc65I	GGTACC	1 cut(s)	1452
AccB1I	GGYRCC	4 cut(s)	1452, 1770, 1846, 3989
AccB7I	CCANNNNNTGG	3 cut(s)	854, 2854, 3557
AccI	GTMKAC	1 cut(s)	2678
AccII	CGCG	2 cut(s)	203, 4257
AccIII	TCCGGA	2 cut(s)	1708, 4462
AcoI	YGGCCR	2 cut(s)	2262, 3692
AcsI	RAATTY	2 cut(s)	1803, 1905
AcuI	CTGAAG	4 cut(s)	336, 537, 1832, 2946
AdeI	CACNNNGTG	2 cut(s)	2612, 3989
AflIII	ACRYGT	1 cut(s)	2283
AloI	GAACNNNNNNTCC	2 cut(s)	2270, 2302
Alw21I	GWGCWC	1 cut(s)	3019
AlwNI	CAGNNNCTG	3 cut(s)	560, 1019, 2066
Aor13HI	TCCGGA	2 cut(s)	1708, 4462
ApoI	RAATTY	2 cut(s)	1803, 1905
ArsI	GACNNNNNNTTYG	2 cut(s)	1583, 1615
AseI	ATTAAT	1 cut(s)	4187
Asp700I	GAANNNNTTC	6 cut(s)	195, 2158, 2862, 3617, 3882, 4269
Asp718I	GGTACC	1 cut(s)	1452
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	4 cut(s)	2225, 4257, 4302, 4445
AspS9I	GGNCC	2 cut(s)	3584, 3723
AsuHPI	GGTGA	8 cut(s)	1297, 2042, 2153, 2221, 2568, 3808, 4000, 4040
AsuII	TTCGAA	1 cut(s)	2289
AsuNHI	GCTAGC	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	3584, 3723
AvrII	CCTAGG	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	2931
BaeGI	GKGCMC	1 cut(s)	3994
BamHI	GGATCC	3 cut(s)	595, 1942, 4369
BanI	GGYRCC	4 cut(s)	1452, 1770, 1846, 3989
BanII	GRGCYC	1 cut(s)	1192
BarI	GAAGNNNNNNTAC	2 cut(s)	2782, 2814
BauI	CACGAG	2 cut(s)	546, 4093
BbsI	GAAGAC	1 cut(s)	2594
Bbv12I	GWGCWC	1 cut(s)	3019
BbvCI	CCTCAGC	1 cut(s)	4374
BceAI	ACGGC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	3844
BclI	TGATCA	2 cut(s)	910, 4138
BfmI	CTRYAG	7 cut(s)	102, 511, 830, 1962, 2214, 2943, 3495
BfoI	RGCGCY	2 cut(s)	2226, 4303
BfuAI	ACCTGC	2 cut(s)	508, 1170
BfuI	GTATCC	1 cut(s)	3844
BglI	GCCNNNNNGGC	2 cut(s)	2464, 3382
BlnI	CCTAGG	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	4296
BmcAI	AGTACT	3 cut(s)	662, 3544, 3979
Bme18I	GGWCC	2 cut(s)	3584, 3723
BmgT120I	GGNCC	2 cut(s)	3584, 3723
BmrI	ACTGGG	2 cut(s)	1195, 2518
BmsI	GCATC	7 cut(s)	1123, 1164, 1865, 2476, 3337, 3897, 4169
BmtI	GCTAGC	1 cut(s)	510
BmuI	ACTGGG	2 cut(s)	1195, 2518
BoxI	GACNNNNGTC	1 cut(s)	4361
BpiI	GAAGAC	1 cut(s)	2594
BplI	GAGNNNNNCTC	2 cut(s)	1907, 1939
BpmI	CTGGAG	5 cut(s)	323, 1920, 2994, 3731, 3833
Bpu10I	CCTNAGC	3 cut(s)	1012, 3900, 4374
Bpu1102I	GCTNAGC	1 cut(s)	4296
Bpu14I	TTCGAA	1 cut(s)	2289
BpuEI	CTTGAG	6 cut(s)	632, 864, 2399, 3119, 3933, 4562
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	1216
BsaI	GGTCTC	3 cut(s)	34, 82, 2045
BsaWI	WCCGGW	2 cut(s)	1708, 4462
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 2270, 2300
Bse118I	RCCGGY	2 cut(s)	2260, 3818
Bse1I	ACTGG	7 cut(s)	114, 921, 1190, 1227, 1850, 2436, 2513
Bse21I	CCTNAGG	1 cut(s)	2931
Bse3DI	GCAATG	2 cut(s)	1946, 3442
Bse8I	GATNNNNATC	1 cut(s)	1216
BseAI	TCCGGA	2 cut(s)	1708, 4462
BseCI	ATCGAT	1 cut(s)	687
BseJI	GATNNNNATC	1 cut(s)	1216
BseMI	GCAATG	2 cut(s)	1946, 3442
BseNI	ACTGG	7 cut(s)	114, 921, 1190, 1227, 1850, 2436, 2513
BseRI	GAGGAG	4 cut(s)	100, 629, 3545, 4578
BseSI	GKGCMC	1 cut(s)	3994
BseYI	CCCAGC	1 cut(s)	3380
BsgI	GTGCAG	3 cut(s)	2623, 3855, 3966
Bsh1236I	CGCG	2 cut(s)	203, 4257
BshNI	GGYRCC	4 cut(s)	1452, 1770, 1846, 3989
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	3019
BsiSI	CCGG	5 cut(s)	1709, 2261, 3691, 3819, 4463
BslFI	GGGAC	2 cut(s)	4332, 4508
BsmFI	GGGAC	2 cut(s)	4332, 4508
BsmI	GAATGC	6 cut(s)	1530, 2365, 2402, 3665, 4445, 4522
Bso31I	GGTCTC	3 cut(s)	34, 82, 2045
Bsp119I	TTCGAA	1 cut(s)	2289
Bsp1286I	GDGCHC	3 cut(s)	1192, 3019, 3994
Bsp13I	TCCGGA	2 cut(s)	1708, 4462
Bsp1407I	TGTACA	1 cut(s)	395
Bsp1720I	GCTNAGC	1 cut(s)	4296
Bsp19I	CCATGG	3 cut(s)	1672, 2459, 4380
BspDI	ATCGAT	1 cut(s)	687
BspEI	TCCGGA	2 cut(s)	1708, 4462
BspFNI	CGCG	2 cut(s)	203, 4257
BspHI	TCATGA	1 cut(s)	319
BspMAI	CTGCAG	4 cut(s)	106, 834, 1966, 2947
BspMI	ACCTGC	2 cut(s)	508, 1170
BspOI	GCTAGC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	3366
BspT104I	TTCGAA	1 cut(s)	2289
BspT107I	GGYRCC	4 cut(s)	1452, 1770, 1846, 3989
BspTNI	GGTCTC	3 cut(s)	34, 82, 2045
BsrDI	GCAATG	2 cut(s)	1946, 3442
BsrFI	RCCGGY	2 cut(s)	2260, 3818
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	7 cut(s)	114, 921, 1190, 1227, 1850, 2436, 2513
BssAI	RCCGGY	2 cut(s)	2260, 3818
BssSI	CACGAG	2 cut(s)	546, 4093
Bst2BI	CACGAG	2 cut(s)	546, 4093
BstAPI	GCANNNNNTGC	2 cut(s)	3989, 4222
BstAUI	TGTACA	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	2289
BstDSI	CCRYGG	3 cut(s)	1672, 2459, 4380
BstEII	GGTNACC	1 cut(s)	3788
BstENI	CCTNNNNNAGG	2 cut(s)	603, 2583
BstFNI	CGCG	2 cut(s)	203, 4257
BstH2I	RGCGCY	2 cut(s)	2226, 4303
BstHHI	GCGC	4 cut(s)	2225, 4257, 4302, 4445
BstNSI	RCATGY	2 cut(s)	2287, 3914
BstPAI	GACNNNNGTC	1 cut(s)	4361
BstPI	GGTNACC	1 cut(s)	3788
BstSFI	CTRYAG	7 cut(s)	102, 511, 830, 1962, 2214, 2943, 3495
BstSLI	GKGCMC	1 cut(s)	3994
BstUI	CGCG	2 cut(s)	203, 4257
BstV2I	GAAGAC	1 cut(s)	2594
BstX2I	RGATCY	5 cut(s)	462, 595, 1942, 2339, 4369
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstYI	RGATCY	5 cut(s)	462, 595, 1942, 2339, 4369
Bsu15I	ATCGAT	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	2931
BsuI	GTATCC	1 cut(s)	3844
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	3 cut(s)	1672, 2459, 4380
BtgZI	GCGATG	1 cut(s)	1425
BtsI	GCAGTG	4 cut(s)	655, 2302, 2490, 3551
BtsIMutI	CAGTG	9 cut(s)	561, 655, 1220, 2052, 2302, 2490, 3551, 3653, 4134
BveI	ACCTGC	2 cut(s)	508, 1170
CaiI	CAGNNNCTG	3 cut(s)	560, 1019, 2066
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	4 cut(s)	2225, 4257, 4302, 4445
Cfr10I	RCCGGY	2 cut(s)	2260, 3818
Cfr13I	GGNCC	2 cut(s)	3584, 3723
ClaI	ATCGAT	1 cut(s)	687
CsiI	ACCWGGT	1 cut(s)	3792
CspCI	CAANNNNNGTGG	2 cut(s)	4292, 4327
DraI	TTTAAA	2 cut(s)	1317, 3394
DraIII	CACNNNGTG	2 cut(s)	2612, 3989
DrdI	GACNNNNNNGTC	3 cut(s)	1718, 3591, 3730
DseDI	GACNNNNNNGTC	3 cut(s)	1718, 3591, 3730
EaeI	YGGCCR	2 cut(s)	2262, 3692
EciI	GGCGGA	2 cut(s)	494, 2013
Eco147I	AGGCCT	4 cut(s)	899, 2929, 2954, 4201
Eco24I	GRGCYC	1 cut(s)	1192
Eco31I	GGTCTC	3 cut(s)	34, 82, 2045
Eco47I	GGWCC	2 cut(s)	3584, 3723
Eco57I	CTGAAG	4 cut(s)	336, 537, 1832, 2946
Eco81I	CCTNAGG	1 cut(s)	2931
Eco91I	GGTNACC	1 cut(s)	3788
EcoNI	CCTNNNNNAGG	2 cut(s)	603, 2583
EcoO109I	RGGNCCY	1 cut(s)	3723
EcoO65I	GGTNACC	1 cut(s)	3788
EcoT22I	ATGCAT	2 cut(s)	2402, 3912
EcoT38I	GRGCYC	1 cut(s)	1192
FalI	AAGNNNNNCTT	2 cut(s)	2693, 2725
FaqI	GGGAC	2 cut(s)	4332, 4508
FauI	CCCGC	2 cut(s)	3154, 3328
FauNDI	CATATG	1 cut(s)	3826
FbaI	TGATCA	2 cut(s)	910, 4138
FblI	GTMKAC	1 cut(s)	2678
FriOI	GRGCYC	1 cut(s)	1192
GlaI	GCGC	4 cut(s)	2224, 4256, 4301, 4444
GsaI	CCCAGC	1 cut(s)	3384
GsuI	CTGGAG	5 cut(s)	323, 1920, 2994, 3731, 3833
HaeII	RGCGCY	2 cut(s)	2226, 4303
HapII	CCGG	5 cut(s)	1709, 2261, 3691, 3819, 4463
HhaI	GCGC	4 cut(s)	2225, 4257, 4302, 4445
Hin6I	GCGC	4 cut(s)	2223, 4255, 4300, 4443
HinP1I	GCGC	4 cut(s)	2223, 4255, 4300, 4443
HincII	GTYRAC	6 cut(s)	213, 1264, 1900, 2758, 3414, 3427
HindII	GTYRAC	6 cut(s)	213, 1264, 1900, 2758, 3414, 3427
HindIII	AAGCTT	3 cut(s)	1623, 2501, 2566
HpaI	GTTAAC	1 cut(s)	213
HpaII	CCGG	5 cut(s)	1709, 2261, 3691, 3819, 4463
HphI	GGTGA	8 cut(s)	1297, 2042, 2153, 2221, 2568, 3808, 4000, 4040
HpyCH4IV	ACGT	2 cut(s)	3717, 4241
HpySE526I	ACGT	2 cut(s)	3717, 4241
HspAI	GCGC	4 cut(s)	2223, 4255, 4300, 4443
Kpn2I	TCCGGA	2 cut(s)	1708, 4462
KpnI	GGTACC	1 cut(s)	1456
KroI	GCCGGC	1 cut(s)	2260
KroNI	GCCGGC	1 cut(s)	2262
Ksp22I	TGATCA	2 cut(s)	910, 4138
KspAI	GTTAAC	1 cut(s)	213
LguI	GCTCTTC	1 cut(s)	3366
LmnI	GCTCC	2 cut(s)	1407, 3532
LweI	GCATC	7 cut(s)	1123, 1164, 1865, 2476, 3337, 3897, 4169
MabI	ACCWGGT	1 cut(s)	3792
MaeII	ACGT	2 cut(s)	3717, 4241
MfeI	CAATTG	2 cut(s)	2849, 4023
MflI	RGATCY	5 cut(s)	462, 595, 1942, 2339, 4369
MhlI	GDGCHC	3 cut(s)	1192, 3019, 3994
MlyI	GAGTC	6 cut(s)	147, 2155, 2759, 3242, 3419, 4049
MmeI	TCCRAC	7 cut(s)	269, 291, 1286, 2176, 4292, 4372, 4379
Mph1103I	ATGCAT	2 cut(s)	2402, 3912
MroI	TCCGGA	2 cut(s)	1708, 4462
MroNI	GCCGGC	1 cut(s)	2260
MroXI	GAANNNNTTC	6 cut(s)	195, 2158, 2862, 3617, 3882, 4269
MspA1I	CMGCKG	4 cut(s)	1332, 3142, 3380, 4295
MspI	CCGG	5 cut(s)	1709, 2261, 3691, 3819, 4463
MunI	CAATTG	2 cut(s)	2849, 4023
Mva1269I	GAATGC	6 cut(s)	1530, 2365, 2402, 3665, 4445, 4522
MvnI	CGCG	2 cut(s)	203, 4257
NaeI	GCCGGC	1 cut(s)	2262
NcoI	CCATGG	3 cut(s)	1672, 2459, 4380
NdeI	CATATG	1 cut(s)	3826
NgoMIV	GCCGGC	1 cut(s)	2260
NheI	GCTAGC	1 cut(s)	506
NmuCI	GTSAC	5 cut(s)	1285, 1341, 1585, 2227, 4363
NsiI	ATGCAT	2 cut(s)	2402, 3912
NspI	RCATGY	2 cut(s)	2287, 3914
NspV	TTCGAA	1 cut(s)	2289
PagI	TCATGA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	1170
PasI	CCCWGGG	1 cut(s)	703
PceI	AGGCCT	4 cut(s)	899, 2929, 2954, 4201
PciI	ACATGT	1 cut(s)	2283
PciSI	GCTCTTC	1 cut(s)	3366
PctI	GAATGC	6 cut(s)	1530, 2365, 2402, 3665, 4445, 4522
PdiI	GCCGGC	1 cut(s)	2262
PdmI	GAANNNNTTC	6 cut(s)	195, 2158, 2862, 3617, 3882, 4269
PflFI	GACNNNGTC	1 cut(s)	1718
PflMI	CCANNNNNTGG	3 cut(s)	854, 2854, 3557
PfoI	TCCNGGA	1 cut(s)	3810
PleI	GAGTC	6 cut(s)	146, 2154, 2759, 3241, 3418, 4049
PpsI	GAGTC	6 cut(s)	146, 2154, 2759, 3241, 3418, 4049
PpuMI	RGGWCCY	1 cut(s)	3723
PscI	ACATGT	1 cut(s)	2283
PshAI	GACNNNNGTC	1 cut(s)	4361
PshBI	ATTAAT	1 cut(s)	4187
PsiI	TTATAA	1 cut(s)	1197
Psp5II	RGGWCCY	1 cut(s)	3723
PspEI	GGTNACC	1 cut(s)	3788
PspFI	CCCAGC	1 cut(s)	3380
PspPI	GGNCC	2 cut(s)	3584, 3723
PspPPI	RGGWCCY	1 cut(s)	3723
PstI	CTGCAG	4 cut(s)	106, 834, 1966, 2947
PstNI	CAGNNNCTG	3 cut(s)	560, 1019, 2066
PsuI	RGATCY	5 cut(s)	462, 595, 1942, 2339, 4369
PsyI	GACNNNGTC	1 cut(s)	1718
PvuII	CAGCTG	3 cut(s)	3142, 3380, 4295
SapI	GCTCTTC	1 cut(s)	3366
Sau96I	GGNCC	2 cut(s)	3584, 3723
ScaI	AGTACT	3 cut(s)	662, 3544, 3979
SchI	GAGTC	6 cut(s)	147, 2155, 2759, 3242, 3419, 4049
SduI	GDGCHC	3 cut(s)	1192, 3019, 3994
SexAI	ACCWGGT	1 cut(s)	3792
SfaNI	GCATC	7 cut(s)	1123, 1164, 1865, 2476, 3337, 3897, 4169
SfcI	CTRYAG	7 cut(s)	102, 511, 830, 1962, 2214, 2943, 3495
SfuI	TTCGAA	1 cut(s)	2289
SinI	GGWCC	2 cut(s)	3584, 3723
SmlI	CTYRAG	6 cut(s)	611, 879, 2414, 3134, 3948, 4577
SmoI	CTYRAG	6 cut(s)	611, 879, 2414, 3134, 3948, 4577
SseBI	AGGCCT	4 cut(s)	899, 2929, 2954, 4201
StuI	AGGCCT	4 cut(s)	899, 2929, 2954, 4201
TaiI	ACGT	2 cut(s)	3720, 4244
TaqI	TCGA	7 cut(s)	136, 687, 1859, 2289, 2449, 3780, 4177
TatI	WGTACW	8 cut(s)	362, 395, 660, 2280, 2294, 2571, 3542, 3977
TauI	GCSGC	2 cut(s)	629, 680
TscAI	CASTG	9 cut(s)	561, 655, 1227, 2059, 2309, 2497, 3558, 3653, 4141
TseFI	GTSAC	5 cut(s)	1285, 1341, 1585, 2227, 4363
Tsp45I	GTSAC	5 cut(s)	1285, 1341, 1585, 2227, 4363
TspGWI	ACGGA	6 cut(s)	485, 3989, 4065, 4351, 4382, 4424
TspRI	CASTG	9 cut(s)	561, 655, 1227, 2059, 2309, 2497, 3558, 3653, 4141
Tth111I	GACNNNGTC	1 cut(s)	1718
Van91I	CCANNNNNTGG	3 cut(s)	854, 2854, 3557
VpaK11BI	GGWCC	2 cut(s)	3584, 3723
VspI	ATTAAT	1 cut(s)	4187
XagI	CCTNNNNNAGG	2 cut(s)	603, 2583
XapI	RAATTY	2 cut(s)	1803, 1905
XbaI	TCTAGA	3 cut(s)	2876, 3019, 3286
XceI	RCATGY	2 cut(s)	2287, 3914
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2272, 3800
XmaJI	CCTAGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	2678
XmnI	GAANNNNTTC	6 cut(s)	195, 2158, 2862, 3617, 3882, 4269
ZrmI	AGTACT	3 cut(s)	662, 3544, 3979
Zsp2I	ATGCAT	2 cut(s)	2402, 3912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.