Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

14755000 .. 14756982

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGGGTCTGGGTTCTGGTGCTTGCAACTCTTGCAAAGTGAACGAAGCTGAGGAGGCCAAGGAGATTTTTAAAGTGAATTCATCAAAGACTGGTTTTGTATACAGGGGAGCCGAGTACTCAGTTCATGATTATGTCTATTTAAGACCCCATTTGTTTTCTACTGAAAGGATGGAAACTGAAACTTTCAAGGCTGGTAGGAATTTGGGACTGAGAGCTTATGTTGTGTGTCAAGTGCTGGAGATAATTGGTACGAAGGAATCTAAACGACCTGGACCAGAATCTACCCAGGTTAAAGTGAGAAGATTTTTCAGACCTGAGGACATTTCGGTTGAGAAGGCATACTGTTCTGATATTAGAGAGGTCTACTACAGTGAAGAAACACACCTTGTGACTGTTGATGATATAGAAGGAAAATGTGAAGTTAGAAAGAAGAGCGATCTTCCAGTATGCAATGCTTCTGTCACTTTCGAGCATATCTTCTTCTGTGAGTATCTGTATGATCCTTCTAATGGGTCTATCAAGCAGTTGCCGGCGACCACCAAACTGAGGTACTCAACAGGAGGAGGTGATGCGGAATCTAGGAAGAGGAAGGGGAAAATCAAAGAAGGAGAACATGTTTCAGAAGTTGAGAAACAGAGAGCTGATGCTGAGCAGAAACGTCTAGCCACATTAGATATATTTGCCGGATGTGGTGGCTTGTCTGAAGGGCTGCGTCAGGCTGGCATTTCATTAACCAAGTGGGCAATTGAGTATGAAGAGCCTGCTGGTGATGCTTTCAAACTGAACCATCCCGAGTCACTGGTGTTTATCAATAACTGCAATGTGATCTTAAGGGCTGTAATGGAGAAATGTGGGGATATAGATGATTGCATCTCAACTTCTGAAGCTGCTGAATTGGCTAAAGCACTTGATGAGAAGGTTAAGAATGATCTGCCACTGCCATGGCAAGTGGATTTCATCAACGGAGGACCTCCATGCCAGGGTTTCTCTGGAATGAATAGGTTCAACCAAAGCACTTGGAGTAAAGTTCAGTGTGAAATGATTTTGGCATTCTTGTCCTTTGCTGACTACTTCCGGCCAAAATATTTCCTCCTGGAGAATGTGAGGAACTTTGTGTCTTTCAACAAAGGACAGACATTCCGTCTGACTCTGGCTTCACTTCTTGAGATGGGTTACCAGGTGAGGTTTGGTATTCTGGAAGCTGGAGCTTATGGAGTTTCCCAGTCACGGAAGCGAGCATTCATATGGGCAGCTGCACCCGATGAGATTCTCCCAGAGTGGCCAGAGCCAATGCATGTCTTTGGTGTACCAGAGTTGAAGATCAATTTGTCAGGGAACTCATATTATGCTGCTGTTGGAAGTACTGCAGGCGGAGCCCCTTTCCGTTCCATAACTGTCAGAGATACAATTGGAGATCTCCCAGCTGTAGGAAATGGAGCATCCAAGGTCAATCTGGAGTACGAAAGTGACCCCATCTCATGGTTCCAGAAGAAAATGCGAGGGGAGATGGCTGTTCTGACTGATCACATTTCGAAAGAAATGAATGAGCTGAATCTCATTCGCTGCCAGAGGATTCCAAAGCGGCCAGGTGCTGATTGGCAATGCCTTCCAGACGAAAAGGTGAAGCTCTCCACTGGACAGATTGTTGACTTAATCCCGTGGTGCCTGCCCAACACGGCCAAGCGCCACAATCAGTGGAAGGGCCTGTTCGGAAGGCTTGACTGGGAAGGCAACTTCCCAACCTCCATCACAGATCCCCAGCCAATGGGAAAGGTGGGAATGTGCTTCCACCCTGACCAGGACAGAATTCTGACAGTTCGGGAATGCGCTCGGTCTCAAGGATTCAGGGATAGTTACCAGTTTTCGGGCAACATTCTTCACAAGCACAGGCAGATTGGAAATGCAGTTCCTCCTACTTTGGCCTATGCGTTGGGACGAAAACTCAAGGAAGCAGTGGACAGCAAGAACAAGGCAGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

661

Amino Acids

74.03

Weight (kDa)

6.87

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	38 - 177	2.3e-24	BAH domain
DNA_methylase	PF00145	222 - 649	4.6e-47	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1662
AccB7I	CCANNNNNTGG	2 cut(s)	1479, 1765
AccI	GTMKAC	2 cut(s)	99, 363
AciI	CCGC	3 cut(s)	572, 1371, 1582
AclWI	GGATC	2 cut(s)	494, 1748
AcoI	YGGCCR	4 cut(s)	1076, 1280, 1583, 1677
AcsI	RAATTY	3 cut(s)	76, 199, 1806
AcuI	CTGAAG	2 cut(s)	723, 903
AdeI	CACNNNGTG	1 cut(s)	388
AfaI	GTAC	6 cut(s)	116, 250, 551, 1308, 1363, 1460
AfiI	CCNNNNNNNGG	9 cut(s)	509, 546, 980, 1227, 1427, 1479, 1765, 1798, 1864
AflII	CTTAAG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	5 cut(s)	187, 778, 1006, 1123, 1318
AhdI	GACNNNNNGTC	1 cut(s)	1140
AjnI	CCWGG	7 cut(s)	268, 285, 978, 1092, 1176, 1585, 1797
AloI	GAACNNNNNNTCC	2 cut(s)	1890, 1922
Alw26I	GTCTC	1 cut(s)	1839
AlwI	GGATC	2 cut(s)	494, 1748
AlwNI	CAGNNNCTG	1 cut(s)	1592
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	7 cut(s)	54, 1076, 1280, 1583, 1677, 1702, 1920
ApeKI	GCWGC	6 cut(s)	709, 887, 1250, 1253, 1349, 1563
ApoI	RAATTY	3 cut(s)	76, 199, 1806
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspLEI	GCGC	2 cut(s)	1686, 1829
AspS9I	GGNCC	3 cut(s)	272, 968, 1702
AsuHPI	GGTGA	4 cut(s)	578, 779, 1192, 1633
AsuII	TTCGAA	1 cut(s)	1532
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	2 cut(s)	272, 968
AxyI	CCTNAGG	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	1282
BanI	GGYRCC	1 cut(s)	1662
BanII	GRGCYC	1 cut(s)	1378
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	6 cut(s)	696, 874, 1240, 1262, 1336, 1550
BccI	CCATC	6 cut(s)	163, 795, 1162, 1481, 1501, 1754
BceAI	ACGGC	1 cut(s)	1692
BciT130I	CCWGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
BclI	TGATCA	1 cut(s)	1522
BcoDI	GTCTC	1 cut(s)	1839
BfaI	CTAG	2 cut(s)	579, 662
BfmI	CTRYAG	3 cut(s)	367, 1365, 1425
BfoI	RGCGCY	1 cut(s)	1687
BfrI	CTTAAG	1 cut(s)	829
BglII	AGATCT	1 cut(s)	1414
BisI	GCNGC	7 cut(s)	710, 888, 1251, 1254, 1350, 1564, 1583
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	7 cut(s)	711, 889, 1252, 1255, 1351, 1565, 1584
BmcAI	AGTACT	2 cut(s)	116, 1363
Bme1390I	CCNGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
Bme18I	GGWCC	2 cut(s)	272, 968
BmeRI	GACNNNNNGTC	1 cut(s)	1140
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	3 cut(s)	272, 968, 1702
BmiI	GGNNCC	4 cut(s)	109, 1375, 1484, 1664
BmrFI	CCNGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
BmrI	ACTGGG	2 cut(s)	1216, 1732
BmsI	GCATC	5 cut(s)	559, 634, 760, 879, 1448
BmuI	ACTGGG	2 cut(s)	1216, 1732
BpmI	CTGGAG	4 cut(s)	257, 1115, 1224, 1475
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	1532
BpuEI	CTTGAG	3 cut(s)	1184, 1821, 1928
BsaI	GGTCTC	1 cut(s)	1839
BsaJI	CCNNGG	6 cut(s)	57, 285, 941, 979, 1443, 1658
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	9 cut(s)	509, 546, 980, 1227, 1427, 1479, 1765, 1798, 1864
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	7 cut(s)	94, 443, 804, 1222, 1639, 1727, 1858
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	3 cut(s)	457, 826, 1607
BseBI	CCWGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
BseDI	CCNNGG	6 cut(s)	57, 285, 941, 979, 1443, 1658
BseGI	GGATG	4 cut(s)	174, 692, 787, 1439
BseLI	CCNNNNNNNGG	9 cut(s)	509, 546, 980, 1227, 1427, 1479, 1765, 1798, 1864
BseMI	GCAATG	3 cut(s)	457, 826, 1607
BseMII	CTCAG	6 cut(s)	39, 132, 200, 306, 536, 639
BseNI	ACTGG	7 cut(s)	94, 443, 804, 1222, 1639, 1727, 1858
BseRI	GAGGAG	2 cut(s)	65, 576
BseXI	GCAGC	6 cut(s)	696, 874, 1240, 1262, 1336, 1550
BseYI	CCCAGC	2 cut(s)	1420, 1758
BsgI	GTGCAG	1 cut(s)	1239
BshFI	GGCC	7 cut(s)	56, 1078, 1282, 1585, 1679, 1704, 1922
BshNI	GGYRCC	1 cut(s)	1662
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	3 cut(s)	530, 684, 1075
BslFI	GGGAC	2 cut(s)	219, 1947
BslI	CCNNNNNNNGG	9 cut(s)	509, 546, 980, 1227, 1427, 1479, 1765, 1798, 1864
BsmAI	GTCTC	1 cut(s)	1839
BsmFI	GGGAC	2 cut(s)	219, 1947
BsmI	GAATGC	3 cut(s)	1049, 1238, 1829
BsnI	GGCC	7 cut(s)	56, 1078, 1282, 1585, 1679, 1704, 1922
Bso31I	GGTCTC	1 cut(s)	1839
BsoBI	CYCGRG	1 cut(s)	791
Bsp119I	TTCGAA	1 cut(s)	1532
Bsp1286I	GDGCHC	1 cut(s)	1378
Bsp143I	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
Bsp1720I	GCTNAGC	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	941
BspACI	CCGC	3 cut(s)	572, 1371, 1582
BspANI	GGCC	7 cut(s)	56, 1078, 1282, 1585, 1679, 1704, 1922
BspCNI	CTCAG	6 cut(s)	40, 131, 201, 307, 537, 640
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	109, 1375, 1484, 1664
BspMAI	CTGCAG	1 cut(s)	1369
BspPI	GGATC	2 cut(s)	494, 1748
BspQI	GCTCTTC	2 cut(s)	425, 750
BspT104I	TTCGAA	1 cut(s)	1532
BspT107I	GGYRCC	1 cut(s)	1662
BspTI	CTTAAG	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	1839
BsrDI	GCAATG	3 cut(s)	457, 826, 1607
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	7 cut(s)	94, 443, 804, 1222, 1639, 1727, 1858
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	6 cut(s)	57, 285, 941, 979, 1443, 1658
BssMI	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
BssNAI	GTATAC	1 cut(s)	100
BssT1I	CCWWGG	3 cut(s)	57, 941, 1443
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
Bst4CI	ACNGT	5 cut(s)	344, 371, 394, 1396, 1816
Bst6I	CTCTTC	3 cut(s)	425, 578, 750
BstAFI	CTTAAG	1 cut(s)	829
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	1532
BstC8I	GCNNGC	7 cut(s)	22, 531, 721, 762, 1236, 1369, 1667
BstDEI	CTNAG	6 cut(s)	48, 118, 209, 315, 545, 648
BstDSI	CCRYGG	2 cut(s)	941, 1658
BstEII	GGTNACC	1 cut(s)	1172
BstF5I	GGATG	4 cut(s)	174, 692, 787, 1439
BstH2I	RGCGCY	1 cut(s)	1687
BstHHI	GCGC	2 cut(s)	1686, 1829
BstKTI	GATC	8 cut(s)	439, 502, 828, 931, 1323, 1417, 1525, 1756
BstMAI	GTCTC	1 cut(s)	1839
BstMBI	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 53, 770, 896, 1373
BstNI	CCWGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
BstNSI	RCATGY	2 cut(s)	617, 1298
BstPI	GGTNACC	1 cut(s)	1172
BstSCI	CCNGG	7 cut(s)	268, 285, 978, 1092, 1176, 1585, 1797
BstSFI	CTRYAG	3 cut(s)	367, 1365, 1425
BstV1I	GCAGC	6 cut(s)	696, 874, 1240, 1262, 1336, 1550
BstX2I	RGATCY	2 cut(s)	1414, 1753
BstXI	CCANNNNNNTGG	1 cut(s)	942
BstYI	RGATCY	2 cut(s)	1414, 1753
BstZ17I	GTATAC	1 cut(s)	100
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	7 cut(s)	56, 1078, 1282, 1585, 1679, 1704, 1922
BtgI	CCRYGG	2 cut(s)	941, 1658
BtsCI	GGATG	4 cut(s)	174, 692, 787, 1439
BtsI	GCAGTG	2 cut(s)	935, 1959
BtsIMutI	CAGTG	7 cut(s)	376, 797, 935, 1037, 1632, 1700, 1959
Cac8I	GCNNGC	7 cut(s)	22, 531, 721, 762, 1236, 1369, 1667
CaiI	CAGNNNCTG	1 cut(s)	1592
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	1686, 1829
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	272, 968, 1702
CseI	GACGC	1 cut(s)	701
CsiI	ACCWGGT	1 cut(s)	1176
Csp6I	GTAC	6 cut(s)	115, 249, 550, 1307, 1362, 1459
CviAII	CATG	6 cut(s)	125, 614, 942, 975, 1295, 1479
CviQI	GTAC	6 cut(s)	115, 249, 550, 1307, 1362, 1459
DdeI	CTNAG	6 cut(s)	48, 118, 209, 315, 545, 648
DpnI	GATC	8 cut(s)	438, 501, 827, 930, 1322, 1416, 1524, 1755
DpnII	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
DraI	TTTAAA	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	388
DriI	GACNNNNNGTC	1 cut(s)	1140
EaeI	YGGCCR	4 cut(s)	1076, 1280, 1583, 1677
Eam1104I	CTCTTC	3 cut(s)	425, 578, 750
Eam1105I	GACNNNNNGTC	1 cut(s)	1140
EarI	CTCTTC	3 cut(s)	425, 578, 750
EciI	GGCGGA	1 cut(s)	1386
Eco130I	CCWWGG	3 cut(s)	57, 941, 1443
Eco24I	GRGCYC	1 cut(s)	1378
Eco31I	GGTCTC	1 cut(s)	1839
Eco47I	GGWCC	2 cut(s)	272, 968
Eco57I	CTGAAG	2 cut(s)	723, 903
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	791
Eco91I	GGTNACC	1 cut(s)	1172
EcoO109I	RGGNCCY	2 cut(s)	968, 1702
EcoO65I	GGTNACC	1 cut(s)	1172
EcoRI	GAATTC	2 cut(s)	76, 1806
EcoRII	CCWGG	7 cut(s)	268, 285, 978, 1092, 1176, 1585, 1797
EcoT14I	CCWWGG	3 cut(s)	57, 941, 1443
EcoT22I	ATGCAT	1 cut(s)	1296
EcoT38I	GRGCYC	1 cut(s)	1378
ErhI	CCWWGG	3 cut(s)	57, 941, 1443
FaeI	CATG	6 cut(s)	128, 617, 945, 978, 1298, 1482
FaqI	GGGAC	2 cut(s)	219, 1947
FatI	CATG	6 cut(s)	124, 613, 941, 974, 1294, 1478
FauNDI	CATATG	1 cut(s)	1244
FbaI	TGATCA	1 cut(s)	1522
FblI	GTMKAC	2 cut(s)	99, 363
Fnu4HI	GCNGC	7 cut(s)	710, 888, 1251, 1254, 1350, 1564, 1583
FokI	GGATG	4 cut(s)	181, 699, 774, 1426
FriOI	GRGCYC	1 cut(s)	1378
Fsp4HI	GCNGC	7 cut(s)	710, 888, 1251, 1254, 1350, 1564, 1583
FspBI	CTAG	2 cut(s)	579, 662
GlaI	GCGC	2 cut(s)	1685, 1828
GluI	GCNGC	7 cut(s)	710, 888, 1251, 1254, 1350, 1564, 1583
GsaI	CCCAGC	2 cut(s)	1424, 1762
GsuI	CTGGAG	4 cut(s)	257, 1115, 1224, 1475
HaeII	RGCGCY	1 cut(s)	1687
HaeIII	GGCC	7 cut(s)	56, 1078, 1282, 1585, 1679, 1704, 1922
HapII	CCGG	3 cut(s)	530, 684, 1075
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	2 cut(s)	1686, 1829
Hin1II	CATG	6 cut(s)	128, 617, 945, 978, 1298, 1482
Hin6I	GCGC	2 cut(s)	1684, 1827
HinP1I	GCGC	2 cut(s)	1684, 1827
HincII	GTYRAC	1 cut(s)	1648
HindII	GTYRAC	1 cut(s)	1648
HinfI	GANTC	9 cut(s)	257, 278, 575, 794, 1147, 1267, 1552, 1573, 1842
HpaII	CCGG	3 cut(s)	530, 684, 1075
HphI	GGTGA	4 cut(s)	578, 779, 1192, 1633
Hpy166II	GTNNAC	6 cut(s)	40, 100, 364, 1307, 1648, 1957
Hpy188III	TCNNGA	9 cut(s)	125, 791, 990, 1163, 1196, 1454, 1486, 1610, 1820
Hpy8I	GTNNAC	6 cut(s)	40, 100, 364, 1307, 1648, 1957
HpyCH4III	ACNGT	5 cut(s)	344, 371, 394, 1396, 1816
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	9 cut(s)	24, 33, 450, 819, 870, 1256, 1294, 1367, 1904
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 53, 770, 896, 1373
HpyF3I	CTNAG	6 cut(s)	48, 118, 209, 315, 545, 648
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	6 cut(s)	128, 617, 945, 978, 1298, 1482
HspAI	GCGC	2 cut(s)	1684, 1827
KroI	GCCGGC	1 cut(s)	529
KroNI	GCCGGC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	1522
Kzo9I	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
LguI	GCTCTTC	2 cut(s)	425, 750
LmnI	GCTCC	4 cut(s)	107, 1205, 1373, 1436
Lsp1109I	GCAGC	6 cut(s)	696, 874, 1240, 1262, 1336, 1550
LweI	GCATC	5 cut(s)	559, 634, 760, 879, 1448
MabI	ACCWGGT	1 cut(s)	1176
MaeI	CTAG	2 cut(s)	579, 662
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	7 cut(s)	388, 460, 795, 1172, 1224, 1466, 1853
MalI	GATC	8 cut(s)	438, 501, 827, 930, 1322, 1416, 1524, 1755
MboI	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
MfeI	CAATTG	2 cut(s)	744, 1407
MflI	RGATCY	2 cut(s)	1414, 1753
MhlI	GDGCHC	1 cut(s)	1378
MlsI	TGGCCA	1 cut(s)	1282
MluCI	AATT	8 cut(s)	76, 199, 243, 744, 893, 1324, 1407, 1806
MluNI	TGGCCA	1 cut(s)	1282
MlyI	GAGTC	2 cut(s)	803, 1141
MmeI	TCCRAC	1 cut(s)	1336
Mox20I	TGGCCA	1 cut(s)	1282
Mph1103I	ATGCAT	1 cut(s)	1296
MroNI	GCCGGC	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	1001
MscI	TGGCCA	1 cut(s)	1282
MseI	TTAA	7 cut(s)	69, 140, 291, 731, 830, 921, 1652
MslI	CAYNNNNRTG	3 cut(s)	129, 940, 1243
Msp20I	TGGCCA	1 cut(s)	1282
MspA1I	CMGCKG	2 cut(s)	1253, 1424
MspCI	CTTAAG	1 cut(s)	829
MspI	CCGG	3 cut(s)	530, 684, 1075
MspR9I	CCNGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
MunI	CAATTG	2 cut(s)	744, 1407
Mva1269I	GAATGC	3 cut(s)	1049, 1238, 1829
MvaI	CCWGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
MwoI	GCNNNNNNNGC	5 cut(s)	30, 53, 770, 896, 1373
NaeI	GCCGGC	1 cut(s)	531
NcoI	CCATGG	1 cut(s)	941
NdeI	CATATG	1 cut(s)	1244
NdeII	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
NgoMIV	GCCGGC	1 cut(s)	529
NlaIII	CATG	6 cut(s)	128, 617, 945, 978, 1298, 1482
NlaIV	GGNNCC	4 cut(s)	109, 1375, 1484, 1664
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	5 cut(s)	388, 460, 795, 1224, 1466
NsiI	ATGCAT	1 cut(s)	1296
NspI	RCATGY	2 cut(s)	617, 1298
NspV	TTCGAA	1 cut(s)	1532
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	613
PciSI	GCTCTTC	2 cut(s)	425, 750
PctI	GAATGC	3 cut(s)	1049, 1238, 1829
PdiI	GCCGGC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	7 cut(s)	257, 278, 575, 1267, 1552, 1573, 1842
PflMI	CCANNNNNTGG	2 cut(s)	1479, 1765
PfoI	TCCNGGA	1 cut(s)	1092
PkrI	GCNGC	7 cut(s)	711, 889, 1252, 1255, 1351, 1565, 1584
PleI	GAGTC	2 cut(s)	802, 1141
PpsI	GAGTC	2 cut(s)	802, 1141
PpuMI	RGGWCCY	1 cut(s)	968
PscI	ACATGT	1 cut(s)	613
Psp5II	RGGWCCY	1 cut(s)	968
Psp6I	CCWGG	7 cut(s)	268, 285, 978, 1092, 1176, 1585, 1797
PspEI	GGTNACC	1 cut(s)	1172
PspFI	CCCAGC	2 cut(s)	1420, 1758
PspGI	CCWGG	7 cut(s)	268, 285, 978, 1092, 1176, 1585, 1797
PspN4I	GGNNCC	4 cut(s)	109, 1375, 1484, 1664
PspPI	GGNCC	3 cut(s)	272, 968, 1702
PspPPI	RGGWCCY	1 cut(s)	968
PstI	CTGCAG	1 cut(s)	1369
PstNI	CAGNNNCTG	1 cut(s)	1592
PsuI	RGATCY	2 cut(s)	1414, 1753
PvuII	CAGCTG	2 cut(s)	1253, 1424
RsaI	GTAC	6 cut(s)	116, 250, 551, 1308, 1363, 1460
RsaNI	GTAC	6 cut(s)	115, 249, 550, 1307, 1362, 1459
RseI	CAYNNNNRTG	3 cut(s)	129, 940, 1243
SapI	GCTCTTC	2 cut(s)	425, 750
SaqAI	TTAA	7 cut(s)	69, 140, 291, 731, 830, 921, 1652
SatI	GCNGC	7 cut(s)	710, 888, 1251, 1254, 1350, 1564, 1583
Sau3AI	GATC	8 cut(s)	436, 499, 825, 928, 1320, 1414, 1522, 1753
Sau96I	GGNCC	3 cut(s)	272, 968, 1702
ScaI	AGTACT	2 cut(s)	116, 1363
SchI	GAGTC	2 cut(s)	803, 1141
ScrFI	CCNGG	7 cut(s)	270, 287, 980, 1094, 1178, 1587, 1799
SduI	GDGCHC	1 cut(s)	1378
SexAI	ACCWGGT	1 cut(s)	1176
SfaNI	GCATC	5 cut(s)	559, 634, 760, 879, 1448
SfcI	CTRYAG	3 cut(s)	367, 1365, 1425
SfuI	TTCGAA	1 cut(s)	1532
SinI	GGWCC	2 cut(s)	272, 968
SmiMI	CAYNNNNRTG	3 cut(s)	129, 940, 1243
SmlI	CTYRAG	4 cut(s)	829, 1163, 1836, 1943
SmoI	CTYRAG	4 cut(s)	829, 1163, 1836, 1943
Sse9I	AATT	8 cut(s)	76, 199, 243, 744, 893, 1324, 1407, 1806
SsiI	CCGC	3 cut(s)	572, 1371, 1582
SspI	AATATT	1 cut(s)	1085
SspMI	CTAG	2 cut(s)	579, 662
StyD4I	CCNGG	7 cut(s)	268, 285, 978, 1092, 1176, 1585, 1797
StyI	CCWWGG	3 cut(s)	57, 941, 1443
TaaI	ACNGT	5 cut(s)	344, 371, 394, 1396, 1816
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	2 cut(s)	468, 1532
TaqII	GACCGA	1 cut(s)	1821
TasI	AATT	8 cut(s)	76, 199, 243, 744, 893, 1324, 1407, 1806
TatI	WGTACW	2 cut(s)	114, 1361
TauI	GCSGC	1 cut(s)	1585
TfiI	GAWTC	7 cut(s)	257, 278, 575, 1267, 1552, 1573, 1842
Tru1I	TTAA	7 cut(s)	69, 140, 291, 731, 830, 921, 1652
Tru9I	TTAA	7 cut(s)	69, 140, 291, 731, 830, 921, 1652
TscAI	CASTG	7 cut(s)	376, 804, 942, 1037, 1639, 1700, 1959
TseFI	GTSAC	5 cut(s)	388, 460, 795, 1224, 1466
TseI	GCWGC	6 cut(s)	709, 887, 1250, 1253, 1349, 1563
Tsp45I	GTSAC	5 cut(s)	388, 460, 795, 1224, 1466
TspDTI	ATGAA	8 cut(s)	69, 113, 717, 768, 946, 1010, 1231, 1556
TspGWI	ACGGA	4 cut(s)	978, 1130, 1243, 1373
TspRI	CASTG	7 cut(s)	376, 804, 942, 1037, 1639, 1700, 1959
Van91I	CCANNNNNTGG	2 cut(s)	1479, 1765
Vha464I	CTTAAG	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	272, 968
XapI	RAATTY	3 cut(s)	76, 199, 1806
XceI	RCATGY	2 cut(s)	617, 1298
XcmI	CCANNNNNNNNNTGG	4 cut(s)	986, 1184, 1450, 1593
XmiI	GTMKAC	2 cut(s)	99, 363
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	2 cut(s)	579, 662
ZrmI	AGTACT	2 cut(s)	116, 1363
Zsp2I	ATGCAT	1 cut(s)	1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.