Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Reverse (-)

31700723 .. 31702500

Gene Structure 1778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0279000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTTGAGTTAGACGTTGTGATCCCAACTGCTTTTGATCCATTTGCCGAAGCGAGAGGGGCCAAGGAGTATGTGCATATCCGTGTGCAGCAAAGGAATGGGAAGAAGTGCCTGACAACAGTTCAAGGGCTGAAGAAGGACTTCAGCTACGAGAAGATACTCAAGGATTTCAAGAAAGAGTTCTGCTGCAACGGCAATGTGGTTCAGGACAAAGAGCTCGGCAAGATAATCCAGCTCCAAGGCGATCAGCGCAAGAACGTCCTCCAGTTTCTTGTCCAGGCAGGAATTGTCAAGAAGGAGCAGATCAAGATTCATGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

107

Amino Acids

12.27

Weight (kDa)

9.32

Isoelectric Point (pI)

14.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	22 - 96	1.4e-25	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	16, 32
AcuI	CTGAAG	2 cut(s)	127, 152
AgsI	TTSAA	2 cut(s)	125, 172
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	3 cut(s)	147, 217, 235
AluI	AGCT	3 cut(s)	147, 217, 235
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	16, 32
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	88, 186
Asp700I	GAANNNNTTC	2 cut(s)	140, 179
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	100, 173
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	89, 187
BlsI	GCNGC	2 cut(s)	90, 188
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	63, 238
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	63, 238
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	100, 173
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	21, 37, 244, 303
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	16, 32
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	63, 238
BssMI	GATC	4 cut(s)	21, 37, 244, 303
BssT1I	CCWWGG	2 cut(s)	63, 238
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	4 cut(s)	24, 40, 247, 306
BstMBI	GATC	4 cut(s)	21, 37, 244, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 192, 249
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	100, 173
BsuRI	GGCC	1 cut(s)	62
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	60
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	5 cut(s)	62, 130, 147, 217, 235
CviKI_1	RGCY	5 cut(s)	62, 130, 147, 217, 235
DpnI	GATC	4 cut(s)	23, 39, 246, 305
DpnII	GATC	4 cut(s)	21, 37, 244, 303
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	63, 238
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	127, 152
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	63, 238
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	63, 238
FaeI	CATG	1 cut(s)	317
FaiI	YATR	3 cut(s)	72, 78, 315
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	89, 187
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	89, 187
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	89, 187
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	310
Hpy188III	TCNNGA	4 cut(s)	172, 206, 292, 307
HpyAV	CCTTC	2 cut(s)	130, 289
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	2 cut(s)	15, 258
HpyCH4V	TGCA	3 cut(s)	76, 88, 189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 192, 249
HpySE526I	ACGT	2 cut(s)	15, 258
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	21, 37, 244, 303
LmnI	GCTCC	2 cut(s)	240, 298
LpnPI	CCDG	7 cut(s)	125, 191, 245, 263, 267, 278, 290
Lsp1109I	GCAGC	2 cut(s)	100, 173
MaeII	ACGT	2 cut(s)	15, 258
MalI	GATC	4 cut(s)	23, 39, 246, 305
MboI	GATC	4 cut(s)	21, 37, 244, 303
MboII	GAAGA	3 cut(s)	115, 145, 166
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	2 cut(s)	50, 272
MroXI	GAANNNNTTC	2 cut(s)	140, 179
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	59, 192, 249
NdeII	GATC	4 cut(s)	21, 37, 244, 303
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	198
PdmI	GAANNNNTTC	2 cut(s)	140, 179
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	90, 188
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	2 cut(s)	89, 187
Sau3AI	GATC	4 cut(s)	21, 37, 244, 303
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	5 cut(s)	18, 149, 219, 237, 261
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	63, 238
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	2 cut(s)	18, 261
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	88, 186
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	71
XmnI	GAANNNNTTC	2 cut(s)	140, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.