metalloendopeptidase activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42390 AT5G42390 |
| fragaria_vesca | FvH4_1g30291 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 |
| malus_domestica | MD00G1159400.v1.1 MD00G1204700.v1.1 |
| prunus_persica | Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 |
| pyrus_communis | pycom290g00010 |
| rosa_chinensis | RchiOBHm_Chr3g0491051 |
| rosa_laevigata | RLG00000022866 |
| rosa_multiflora | Rmu_co8044182.1_g000001 Rmu_ssc0000386.1_g000043 |
| rosa_roxburghii | Rroxscaffold_5G00351210 Rroxscaffold_6G00393270 |
| rosa_rugosa | Rorug03G0245500 Rorug04G0069600 Rorug04G0069700 Rorug04G0070700 Rorug04G0070800 |
| rosa_samantha | Rh3AG295700 Rh3BG331900 Rh3CG329000 Rh3DG329500 |
| rosa_wichuraiana | Rw3G026110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3251 |
| AarI | CACCTGC | 1 cut(s) | 1255 |
| Acc36I | ACCTGC | 2 cut(s) | 1255, 2476 |
| AccB1I | GGYRCC | 2 cut(s) | 1976, 2173 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1704 |
| AccBSI | CCGCTC | 1 cut(s) | 2758 |
| AccI | GTMKAC | 1 cut(s) | 3624 |
| AccII | CGCG | 1 cut(s) | 999 |
| AciI | CCGC | 7 cut(s) | 5, 82, 647, 1134, 2371, 2594, 2758 |
| AclWI | GGATC | 6 cut(s) | 516, 694, 1644, 1911, 2300, 3189 |
| AcoI | YGGCCR | 2 cut(s) | 6, 1888 |
| AcuI | CTGAAG | 2 cut(s) | 288, 3735 |
| AcyI | GRCGYC | 2 cut(s) | 172, 1977 |
| AdeI | CACNNNGTG | 2 cut(s) | 356, 2301 |
| AfaI | GTAC | 9 cut(s) | 135, 475, 885, 1127, 1429, 1666, 2439, 2443, 2619 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 168, 533, 1369, 1704, 3379 |
| AflIII | ACRYGT | 1 cut(s) | 736 |
| AjnI | CCWGG | 6 cut(s) | 167, 280, 479, 526, 1417, 3237 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1191, 1223 |
| Alw21I | GWGCWC | 3 cut(s) | 115, 2628, 3694 |
| Alw26I | GTCTC | 5 cut(s) | 54, 122, 1955, 2936, 3003 |
| AlwI | GGATC | 6 cut(s) | 516, 694, 1644, 1911, 2300, 3189 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 266, 511, 1241, 1688, 2634, 3056 |
| AoxI | GGCC | 5 cut(s) | 6, 1219, 1888, 3052, 3785 |
| ApeKI | GCWGC | 9 cut(s) | 410, 467, 616, 1823, 2033, 2120, 2396, 3151, 3608 |
| AseI | ATTAAT | 2 cut(s) | 141, 1587 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1467, 2473, 3323 |
| AspLEI | GCGC | 4 cut(s) | 621, 1885, 1979, 2226 |
| AspS9I | GGNCC | 4 cut(s) | 449, 2688, 3053, 3471 |
| AsuHPI | GGTGA | 7 cut(s) | 97, 831, 905, 1541, 1784, 2501, 3713 |
| AsuII | TTCGAA | 1 cut(s) | 74 |
| AvaII | GGWCC | 3 cut(s) | 449, 2688, 3471 |
| AxyI | CCTNAGG | 1 cut(s) | 338 |
| BaeGI | GKGCMC | 1 cut(s) | 1290 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1588, 1621 |
| BalI | TGGCCA | 1 cut(s) | 1890 |
| BanI | GGYRCC | 2 cut(s) | 1976, 2173 |
| BanII | GRGCYC | 3 cut(s) | 790, 3237, 3694 |
| BauI | CACGAG | 2 cut(s) | 933, 3670 |
| BbsI | GAAGAC | 3 cut(s) | 422, 708, 3624 |
| Bbv12I | GWGCWC | 3 cut(s) | 115, 2628, 3694 |
| BbvI | GCAGC | 9 cut(s) | 397, 479, 603, 1835, 2045, 2107, 2408, 3138, 3595 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 170, 204, 1367, 1401 |
| BciT130I | CCWGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| BclI | TGATCA | 2 cut(s) | 1348, 3637 |
| BcoDI | GTCTC | 5 cut(s) | 54, 122, 1955, 2936, 3003 |
| BfaI | CTAG | 7 cut(s) | 303, 1223, 1254, 1275, 2106, 2355, 3258 |
| BfmI | CTRYAG | 2 cut(s) | 2031, 3539 |
| BfoI | RGCGCY | 1 cut(s) | 1980 |
| BfuAI | ACCTGC | 2 cut(s) | 1255, 2476 |
| BglII | AGATCT | 3 cut(s) | 868, 3094, 3583 |
| BlpI | GCTNAGC | 1 cut(s) | 1043 |
| Bme1390I | CCNGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| Bme18I | GGWCC | 3 cut(s) | 449, 2688, 3471 |
| BmgT120I | GGNCC | 4 cut(s) | 449, 2688, 3053, 3471 |
| BmiI | GGNNCC | 9 cut(s) | 450, 1055, 1978, 2145, 2175, 2769, 3236, 3473, 3555 |
| BmrFI | CCNGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| BmsI | GCATC | 8 cut(s) | 880, 1783, 1870, 2635, 2806, 3388, 3481, 3585 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3716 |
| BpiI | GAAGAC | 3 cut(s) | 422, 708, 3624 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1952, 1984 |
| BpmI | CTGGAG | 3 cut(s) | 518, 549, 3708 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2157, 2163, 3693 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1043 |
| Bpu14I | TTCGAA | 1 cut(s) | 74 |
| BpuEI | CTTGAG | 2 cut(s) | 2189, 2642 |
| Bsa29I | ATCGAT | 1 cut(s) | 693 |
| BsaAI | YACGTR | 2 cut(s) | 682, 2441 |
| BsaBI | GATNNNNATC | 1 cut(s) | 867 |
| BsaHI | GRCGYC | 2 cut(s) | 172, 1977 |
| BsaI | GGTCTC | 1 cut(s) | 1955 |
| BsaJI | CCNNGG | 6 cut(s) | 444, 748, 1417, 1980, 2538, 3557 |
| BsaWI | WCCGGW | 1 cut(s) | 3102 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2448, 2478, 2939, 2969 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 168, 533, 1369, 1704, 3379 |
| Bse1I | ACTGG | 6 cut(s) | 260, 891, 1009, 1222, 1315, 2602 |
| Bse21I | CCTNAGG | 1 cut(s) | 338 |
| Bse3DI | GCAATG | 4 cut(s) | 1275, 2195, 2745, 2798 |
| Bse8I | GATNNNNATC | 1 cut(s) | 867 |
| BseBI | CCWGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| BseCI | ATCGAT | 1 cut(s) | 693 |
| BseDI | CCNNGG | 6 cut(s) | 444, 748, 1417, 1980, 2538, 3557 |
| BseJI | GATNNNNATC | 1 cut(s) | 867 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 168, 533, 1369, 1704, 3379 |
| BseMI | GCAATG | 4 cut(s) | 1275, 2195, 2745, 2798 |
| BseNI | ACTGG | 6 cut(s) | 260, 891, 1009, 1222, 1315, 2602 |
| BseRI | GAGGAG | 2 cut(s) | 2894, 3161 |
| BseSI | GKGCMC | 1 cut(s) | 1290 |
| BseXI | GCAGC | 9 cut(s) | 397, 479, 603, 1835, 2045, 2107, 2408, 3138, 3595 |
| BsgI | GTGCAG | 3 cut(s) | 1227, 2004, 3042 |
| Bsh1236I | CGCG | 1 cut(s) | 999 |
| BshFI | GGCC | 5 cut(s) | 8, 1221, 1890, 3054, 3787 |
| BshNI | GGYRCC | 2 cut(s) | 1976, 2173 |
| BshVI | ATCGAT | 1 cut(s) | 693 |
| BsiHKAI | GWGCWC | 3 cut(s) | 115, 2628, 3694 |
| BsiSI | CCGG | 2 cut(s) | 1941, 3103 |
| BsiWI | CGTACG | 1 cut(s) | 2437 |
| BslFI | GGGAC | 2 cut(s) | 793, 2882 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 168, 533, 1369, 1704, 3379 |
| BsmAI | GTCTC | 5 cut(s) | 54, 122, 1955, 2936, 3003 |
| BsmBI | CGTCTC | 3 cut(s) | 54, 122, 2936 |
| BsmFI | GGGAC | 2 cut(s) | 793, 2882 |
| BsmI | GAATGC | 2 cut(s) | 1027, 2592 |
| BsnI | GGCC | 5 cut(s) | 8, 1221, 1890, 3054, 3787 |
| Bso31I | GGTCTC | 1 cut(s) | 1955 |
| Bsp119I | TTCGAA | 1 cut(s) | 74 |
| Bsp1286I | GDGCHC | 6 cut(s) | 115, 790, 1290, 2628, 3237, 3694 |
| Bsp1407I | TGTACA | 1 cut(s) | 133 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1043 |
| BspACI | CCGC | 7 cut(s) | 5, 82, 647, 1134, 2371, 2594, 2758 |
| BspANI | GGCC | 5 cut(s) | 8, 1221, 1890, 3054, 3787 |
| BspDI | ATCGAT | 1 cut(s) | 693 |
| BspFNI | CGCG | 1 cut(s) | 999 |
| BspLI | GGNNCC | 9 cut(s) | 450, 1055, 1978, 2145, 2175, 2769, 3236, 3473, 3555 |
| BspMAI | CTGCAG | 2 cut(s) | 2035, 3543 |
| BspMI | ACCTGC | 2 cut(s) | 1255, 2476 |
| BspPI | GGATC | 6 cut(s) | 516, 694, 1644, 1911, 2300, 3189 |
| BspQI | GCTCTTC | 1 cut(s) | 1065 |
| BspT104I | TTCGAA | 1 cut(s) | 74 |
| BspT107I | GGYRCC | 2 cut(s) | 1976, 2173 |
| BspTNI | GGTCTC | 1 cut(s) | 1955 |
| BsrBI | CCGCTC | 1 cut(s) | 2758 |
| BsrDI | GCAATG | 4 cut(s) | 1275, 2195, 2745, 2798 |
| BsrGI | TGTACA | 1 cut(s) | 133 |
| BsrI | ACTGG | 6 cut(s) | 260, 891, 1009, 1222, 1315, 2602 |
| BssECI | CCNNGG | 6 cut(s) | 444, 748, 1417, 1980, 2538, 3557 |
| BssNAI | GTATAC | 1 cut(s) | 3625 |
| BssNI | GRCGYC | 2 cut(s) | 172, 1977 |
| BssSI | CACGAG | 2 cut(s) | 933, 3670 |
| BssT1I | CCWWGG | 3 cut(s) | 748, 1980, 3557 |
| Bst1107I | GTATAC | 1 cut(s) | 3625 |
| Bst2BI | CACGAG | 2 cut(s) | 933, 3670 |
| Bst2UI | CCWGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| Bst6I | CTCTTC | 7 cut(s) | 1065, 1547, 1953, 2031, 2072, 3104, 3329 |
| BstACI | GRCGYC | 2 cut(s) | 172, 1977 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1241, 3056 |
| BstAUI | TGTACA | 1 cut(s) | 133 |
| BstBAI | YACGTR | 2 cut(s) | 682, 2441 |
| BstBI | TTCGAA | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 5 cut(s) | 2228, 2592, 3052, 3403, 3543 |
| BstDSI | CCRYGG | 1 cut(s) | 444 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 531, 1367 |
| BstFNI | CGCG | 1 cut(s) | 999 |
| BstH2I | RGCGCY | 1 cut(s) | 1980 |
| BstHHI | GCGC | 4 cut(s) | 621, 1885, 1979, 2226 |
| BstMAI | GTCTC | 5 cut(s) | 54, 122, 1955, 2936, 3003 |
| BstNI | CCWGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| BstNSI | RCATGY | 6 cut(s) | 34, 740, 2069, 2230, 3039, 3405 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3716 |
| BstSCI | CCNGG | 6 cut(s) | 167, 280, 479, 526, 1417, 3237 |
| BstSFI | CTRYAG | 2 cut(s) | 2031, 3539 |
| BstSLI | GKGCMC | 1 cut(s) | 1290 |
| BstSNI | TACGTA | 1 cut(s) | 2441 |
| BstUI | CGCG | 1 cut(s) | 999 |
| BstV1I | GCAGC | 9 cut(s) | 397, 479, 603, 1835, 2045, 2107, 2408, 3138, 3595 |
| BstV2I | GAAGAC | 3 cut(s) | 422, 708, 3624 |
| BstX2I | RGATCY | 5 cut(s) | 508, 868, 3094, 3181, 3583 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1987, 2704, 3069 |
| BstYI | RGATCY | 5 cut(s) | 508, 868, 3094, 3181, 3583 |
| BstZ17I | GTATAC | 1 cut(s) | 3625 |
| Bsu15I | ATCGAT | 1 cut(s) | 693 |
| Bsu36I | CCTNAGG | 1 cut(s) | 338 |
| BsuRI | GGCC | 5 cut(s) | 8, 1221, 1890, 3054, 3787 |
| BsuTUI | ATCGAT | 1 cut(s) | 693 |
| BtgI | CCRYGG | 1 cut(s) | 444 |
| BtgZI | GCGATG | 1 cut(s) | 317 |
| BtsI | GCAGTG | 1 cut(s) | 2826 |
| BtsIMutI | CAGTG | 7 cut(s) | 267, 804, 828, 1902, 2306, 2635, 2826 |
| BveI | ACCTGC | 2 cut(s) | 1255, 2476 |
| Cac8I | GCNNGC | 5 cut(s) | 2228, 2592, 3052, 3403, 3543 |
| CaiI | CAGNNNCTG | 6 cut(s) | 266, 511, 1241, 1688, 2634, 3056 |
| CfoI | GCGC | 4 cut(s) | 621, 1885, 1979, 2226 |
| Cfr13I | GGNCC | 4 cut(s) | 449, 2688, 3053, 3471 |
| ClaI | ATCGAT | 1 cut(s) | 693 |
| CseI | GACGC | 1 cut(s) | 161 |
| Csp6I | GTAC | 9 cut(s) | 134, 474, 884, 1126, 1428, 1665, 2438, 2442, 2618 |
| CviQI | GTAC | 9 cut(s) | 134, 474, 884, 1126, 1428, 1665, 2438, 2442, 2618 |
| DinI | GGCGCC | 1 cut(s) | 1978 |
| DraI | TTTAAA | 1 cut(s) | 897 |
| DraIII | CACNNNGTG | 2 cut(s) | 356, 2301 |
| EaeI | YGGCCR | 2 cut(s) | 6, 1888 |
| Eam1104I | CTCTTC | 7 cut(s) | 1065, 1547, 1953, 2031, 2072, 3104, 3329 |
| EarI | CTCTTC | 7 cut(s) | 1065, 1547, 1953, 2031, 2072, 3104, 3329 |
| EciI | GGCGGA | 1 cut(s) | 636 |
| Ecl136II | GAGCTC | 1 cut(s) | 3692 |
| Eco105I | TACGTA | 1 cut(s) | 2441 |
| Eco130I | CCWWGG | 3 cut(s) | 748, 1980, 3557 |
| Eco24I | GRGCYC | 3 cut(s) | 790, 3237, 3694 |
| Eco31I | GGTCTC | 1 cut(s) | 1955 |
| Eco32I | GATATC | 1 cut(s) | 2190 |
| Eco47I | GGWCC | 3 cut(s) | 449, 2688, 3471 |
| Eco53kI | GAGCTC | 1 cut(s) | 3692 |
| Eco57I | CTGAAG | 2 cut(s) | 288, 3735 |
| Eco81I | CCTNAGG | 1 cut(s) | 338 |
| EcoICRI | GAGCTC | 1 cut(s) | 3692 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 531, 1367 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3053 |
| EcoRI | GAATTC | 3 cut(s) | 88, 1991, 2558 |
| EcoRII | CCWGG | 6 cut(s) | 167, 280, 479, 526, 1417, 3237 |
| EcoRV | GATATC | 1 cut(s) | 2190 |
| EcoT14I | CCWWGG | 3 cut(s) | 748, 1980, 3557 |
| EcoT22I | ATGCAT | 3 cut(s) | 2650, 3403, 3514 |
| EcoT38I | GRGCYC | 3 cut(s) | 790, 3237, 3694 |
| EgeI | GGCGCC | 1 cut(s) | 1978 |
| EheI | GGCGCC | 1 cut(s) | 1978 |
| ErhI | CCWWGG | 3 cut(s) | 748, 1980, 3557 |
| Esp3I | CGTCTC | 3 cut(s) | 54, 122, 2936 |
| FaqI | GGGAC | 2 cut(s) | 793, 2882 |
| FauI | CCCGC | 2 cut(s) | 75, 1141 |
| FauNDI | CATATG | 5 cut(s) | 726, 880, 2613, 3298, 3634 |
| FbaI | TGATCA | 2 cut(s) | 1348, 3637 |
| FblI | GTMKAC | 1 cut(s) | 3624 |
| FriOI | GRGCYC | 3 cut(s) | 790, 3237, 3694 |
| FspBI | CTAG | 7 cut(s) | 303, 1223, 1254, 1275, 2106, 2355, 3258 |
| GlaI | GCGC | 4 cut(s) | 620, 1884, 1978, 2225 |
| GsuI | CTGGAG | 3 cut(s) | 518, 549, 3708 |
| HaeII | RGCGCY | 1 cut(s) | 1980 |
| HaeIII | GGCC | 5 cut(s) | 8, 1221, 1890, 3054, 3787 |
| HapII | CCGG | 2 cut(s) | 1941, 3103 |
| HgaI | GACGC | 1 cut(s) | 161 |
| HhaI | GCGC | 4 cut(s) | 621, 1885, 1979, 2226 |
| Hin1I | GRCGYC | 2 cut(s) | 172, 1977 |
| Hin6I | GCGC | 4 cut(s) | 619, 1883, 1977, 2224 |
| HinP1I | GCGC | 4 cut(s) | 619, 1883, 1977, 2224 |
| HincII | GTYRAC | 1 cut(s) | 1003 |
| HindII | GTYRAC | 1 cut(s) | 1003 |
| HindIII | AAGCTT | 1 cut(s) | 2701 |
| HpaII | CCGG | 2 cut(s) | 1941, 3103 |
| HphI | GGTGA | 7 cut(s) | 97, 831, 905, 1541, 1784, 2501, 3713 |
| Hpy166II | GTNNAC | 8 cut(s) | 679, 1003, 1319, 1814, 2390, 2535, 3385, 3625 |
| Hpy8I | GTNNAC | 8 cut(s) | 679, 1003, 1319, 1814, 2390, 2535, 3385, 3625 |
| HpyAV | CCTTC | 9 cut(s) | 1647, 1652, 1737, 2245, 2994, 3172, 3485, 3556, 3728 |
| HpyCH4IV | ACGT | 4 cut(s) | 681, 763, 2440, 3621 |
| HpySE526I | ACGT | 4 cut(s) | 681, 763, 2440, 3621 |
| Hsp92I | GRCGYC | 2 cut(s) | 172, 1977 |
| HspAI | GCGC | 4 cut(s) | 619, 1883, 1977, 2224 |
| KasI | GGCGCC | 1 cut(s) | 1976 |
| Ksp22I | TGATCA | 2 cut(s) | 1348, 3637 |
| LguI | GCTCTTC | 1 cut(s) | 1065 |
| LmnI | GCTCC | 8 cut(s) | 1255, 2221, 2482, 2707, 2767, 3148, 3240, 3689 |
| Lsp1109I | GCAGC | 9 cut(s) | 397, 479, 603, 1835, 2045, 2107, 2408, 3138, 3595 |
| LweI | GCATC | 8 cut(s) | 880, 1783, 1870, 2635, 2806, 3388, 3481, 3585 |
| MaeI | CTAG | 7 cut(s) | 303, 1223, 1254, 1275, 2106, 2355, 3258 |
| MaeII | ACGT | 4 cut(s) | 681, 763, 2440, 3621 |
| MbiI | CCGCTC | 1 cut(s) | 2758 |
| MfeI | CAATTG | 5 cut(s) | 1059, 1405, 1626, 2666, 3641 |
| MflI | RGATCY | 5 cut(s) | 508, 868, 3094, 3181, 3583 |
| MhlI | GDGCHC | 6 cut(s) | 115, 790, 1290, 2628, 3237, 3694 |
| MlsI | TGGCCA | 1 cut(s) | 1890 |
| MluNI | TGGCCA | 1 cut(s) | 1890 |
| Mly113I | GGCGCC | 1 cut(s) | 1977 |
| MlyI | GAGTC | 4 cut(s) | 1640, 2420, 2540, 2900 |
| MmeI | TCCRAC | 3 cut(s) | 1968, 2446, 3435 |
| Mox20I | TGGCCA | 1 cut(s) | 1890 |
| Mph1103I | ATGCAT | 3 cut(s) | 2650, 3403, 3514 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1467, 2473, 3323 |
| MscI | TGGCCA | 1 cut(s) | 1890 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3680 |
| Msp20I | TGGCCA | 1 cut(s) | 1890 |
| MspA1I | CMGCKG | 1 cut(s) | 2399 |
| MspI | CCGG | 2 cut(s) | 1941, 3103 |
| MspR9I | CCNGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| MunI | CAATTG | 5 cut(s) | 1059, 1405, 1626, 2666, 3641 |
| Mva1269I | GAATGC | 2 cut(s) | 1027, 2592 |
| MvaI | CCWGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| MvnI | CGCG | 1 cut(s) | 999 |
| NarI | GGCGCC | 1 cut(s) | 1977 |
| NdeI | CATATG | 5 cut(s) | 726, 880, 2613, 3298, 3634 |
| NlaIV | GGNNCC | 9 cut(s) | 450, 1055, 1978, 2145, 2175, 2769, 3236, 3473, 3555 |
| NmuCI | GTSAC | 7 cut(s) | 262, 1410, 1529, 1643, 1669, 2263, 3701 |
| NsiI | ATGCAT | 3 cut(s) | 2650, 3403, 3514 |
| NspI | RCATGY | 6 cut(s) | 34, 740, 2069, 2230, 3039, 3405 |
| NspV | TTCGAA | 1 cut(s) | 74 |
| PaeI | GCATGC | 2 cut(s) | 2230, 3405 |
| PaqCI | CACCTGC | 1 cut(s) | 1255 |
| PciI | ACATGT | 1 cut(s) | 736 |
| PciSI | GCTCTTC | 1 cut(s) | 1065 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 112 |
| PctI | GAATGC | 2 cut(s) | 1027, 2592 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1467, 2473, 3323 |
| PfeI | GAWTC | 8 cut(s) | 857, 1468, 1501, 2506, 3222, 3281, 3659, 3725 |
| Pfl23II | CGTACG | 1 cut(s) | 2437 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1704 |
| PfoI | TCCNGGA | 2 cut(s) | 280, 526 |
| PleI | GAGTC | 4 cut(s) | 1640, 2419, 2539, 2899 |
| PluTI | GGCGCC | 1 cut(s) | 1980 |
| PpsI | GAGTC | 4 cut(s) | 1640, 2419, 2539, 2899 |
| Ppu21I | YACGTR | 2 cut(s) | 682, 2441 |
| PscI | ACATGT | 1 cut(s) | 736 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3716 |
| PshBI | ATTAAT | 2 cut(s) | 141, 1587 |
| PsiI | TTATAA | 1 cut(s) | 3251 |
| Psp124BI | GAGCTC | 1 cut(s) | 3694 |
| Psp6I | CCWGG | 6 cut(s) | 167, 280, 479, 526, 1417, 3237 |
| PspGI | CCWGG | 6 cut(s) | 167, 280, 479, 526, 1417, 3237 |
| PspLI | CGTACG | 1 cut(s) | 2437 |
| PspN4I | GGNNCC | 9 cut(s) | 450, 1055, 1978, 2145, 2175, 2769, 3236, 3473, 3555 |
| PspPI | GGNCC | 4 cut(s) | 449, 2688, 3053, 3471 |
| PstI | CTGCAG | 2 cut(s) | 2035, 3543 |
| PstNI | CAGNNNCTG | 6 cut(s) | 266, 511, 1241, 1688, 2634, 3056 |
| PsuI | RGATCY | 5 cut(s) | 508, 868, 3094, 3181, 3583 |
| PvuII | CAGCTG | 1 cut(s) | 2399 |
| RsaI | GTAC | 9 cut(s) | 135, 475, 885, 1127, 1429, 1666, 2439, 2443, 2619 |
| RsaNI | GTAC | 9 cut(s) | 134, 474, 884, 1126, 1428, 1665, 2438, 2442, 2618 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3680 |
| SacI | GAGCTC | 1 cut(s) | 3694 |
| SapI | GCTCTTC | 1 cut(s) | 1065 |
| Sau96I | GGNCC | 4 cut(s) | 449, 2688, 3053, 3471 |
| SchI | GAGTC | 4 cut(s) | 1640, 2420, 2540, 2900 |
| ScrFI | CCNGG | 6 cut(s) | 169, 282, 481, 528, 1419, 3239 |
| SduI | GDGCHC | 6 cut(s) | 115, 790, 1290, 2628, 3237, 3694 |
| SfaNI | GCATC | 8 cut(s) | 880, 1783, 1870, 2635, 2806, 3388, 3481, 3585 |
| SfcI | CTRYAG | 2 cut(s) | 2031, 3539 |
| SfoI | GGCGCC | 1 cut(s) | 1978 |
| SfuI | TTCGAA | 1 cut(s) | 74 |
| SinI | GGWCC | 3 cut(s) | 449, 2688, 3471 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3680 |
| SmlI | CTYRAG | 2 cut(s) | 2168, 2621 |
| SmoI | CTYRAG | 2 cut(s) | 2168, 2621 |
| SnaBI | TACGTA | 1 cut(s) | 2441 |
| SphI | GCATGC | 2 cut(s) | 2230, 3405 |
| SsiI | CCGC | 7 cut(s) | 5, 82, 647, 1134, 2371, 2594, 2758 |
| SspDI | GGCGCC | 1 cut(s) | 1976 |
| SspI | AATATT | 1 cut(s) | 1560 |
| SspMI | CTAG | 7 cut(s) | 303, 1223, 1254, 1275, 2106, 2355, 3258 |
| SstI | GAGCTC | 1 cut(s) | 3694 |
| StyD4I | CCNGG | 6 cut(s) | 167, 280, 479, 526, 1417, 3237 |
| StyI | CCWWGG | 3 cut(s) | 748, 1980, 3557 |
| TaiI | ACGT | 4 cut(s) | 684, 766, 2443, 3624 |
| TaqII | GACCGA | 2 cut(s) | 2282, 2676 |
| TatI | WGTACW | 3 cut(s) | 133, 473, 883 |
| TauI | GCSGC | 3 cut(s) | 8, 2374, 2597 |
| TfiI | GAWTC | 8 cut(s) | 857, 1468, 1501, 2506, 3222, 3281, 3659, 3725 |
| TscAI | CASTG | 7 cut(s) | 267, 811, 828, 1902, 2306, 2635, 2826 |
| TseFI | GTSAC | 7 cut(s) | 262, 1410, 1529, 1643, 1669, 2263, 3701 |
| TseI | GCWGC | 9 cut(s) | 410, 467, 616, 1823, 2033, 2120, 2396, 3151, 3608 |
| Tsp45I | GTSAC | 7 cut(s) | 262, 1410, 1529, 1643, 1669, 2263, 3701 |
| TspGWI | ACGGA | 7 cut(s) | 32, 964, 1445, 2552, 2763, 2960, 3484 |
| TspRI | CASTG | 7 cut(s) | 267, 811, 828, 1902, 2306, 2635, 2826 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1704 |
| VpaK11BI | GGWCC | 3 cut(s) | 449, 2688, 3471 |
| VspI | ATTAAT | 2 cut(s) | 141, 1587 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 531, 1367 |
| XceI | RCATGY | 6 cut(s) | 34, 740, 2069, 2230, 3039, 3405 |
| XmiI | GTMKAC | 1 cut(s) | 3624 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1467, 2473, 3323 |
| XspI | CTAG | 7 cut(s) | 303, 1223, 1254, 1275, 2106, 2355, 3258 |
| Zsp2I | ATGCAT | 3 cut(s) | 2650, 3403, 3514 |