Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8044182.1

Orthogroup ID

OG0003778

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8044182.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ctgaatctcggatggtatgtcatatctgtaacatcaactcctggcaaggttcacaaagctgttgatgcatgcaagaatgtccttagaggtttgcatagcaacaagatttcccaaagggagctggacagggcaaaacggacgcttctgatgagacatgaagctgagatcaagtcaaatggctactggcttggacttttagctcacttgcaagcttcttctgttccaaggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

77

Amino Acids

8.66

Weight (kDa)

10.29

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42390 AT5G42390
fragaria_vesca	FvH4_1g30291 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800
malus_domestica	MD00G1159400.v1.1 MD00G1204700.v1.1
prunus_persica	Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1
pyrus_communis	pycom290g00010
rosa_chinensis	RchiOBHm_Chr3g0491051
rosa_laevigata	RLG00000022866
rosa_multiflora	Rmu_co8044182.1_g000001 Rmu_ssc0000386.1_g000043
rosa_roxburghii	Rroxscaffold_5G00351210 Rroxscaffold_6G00393270
rosa_rugosa	Rorug03G0245500 Rorug04G0069600 Rorug04G0069700 Rorug04G0070700 Rorug04G0070800
rosa_samantha	Rh3AG295700 Rh3BG331900 Rh3CG329000 Rh3DG329500
rosa_wichuraiana	Rw3G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	59, 121, 161, 200, 212
AluI	AGCT	5 cut(s)	59, 121, 161, 200, 212
Alw26I	GTCTC	1 cut(s)	145
BccI	CCATC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	70, 210
BstDEI	CTNAG	2 cut(s)	83, 162
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	70, 210
CseI	GACGC	1 cut(s)	148
CviAII	CATG	2 cut(s)	69, 155
CviJI	RGCY	7 cut(s)	59, 121, 161, 180, 187, 200, 212
CviKI_1	RGCY	7 cut(s)	59, 121, 161, 180, 187, 200, 212
DdeI	CTNAG	2 cut(s)	83, 162
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	72, 158
FaiI	YATR	5 cut(s)	18, 23, 70, 96, 156
FatI	CATG	2 cut(s)	68, 154
FokI	GGATG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	72, 158
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	11, 147
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	68, 72, 94, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	83, 162
Hsp92II	CATG	2 cut(s)	72, 158
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	27, 54, 107, 112, 169
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	207
MnlI	CCTC	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	72, 158
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	72
PaeI	GCATGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	7 cut(s)	51, 61, 91, 123, 163, 202, 214
SfaNI	GCATC	1 cut(s)	55
SphI	GCATGC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.