Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003778

Physical Location & Seq

Genomic Coordinates Reverse (-)

10751064 .. 10751998

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0069600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTTCTCTATCTTCAACTAATTTGATTGGTACAGGCGGTTTTGGATCTGTGTATAAAGGAACTCTGGATAATGATGGAGTTGTTGTCGCTGTGAAGGTGTTTAACATGTTACAGAAGGGAGCTTCAACGAGTTTCATCGCCGAGTGTGAGGCATTGAGGAATATTAGACATCGAAATCTGGTTAAGATTATAACTGCATGTTCAAGTGTTGATTTCCATGGAAATGATTTCAAGGCTCTGGTTTATCAGTTTATGGATAATGGAAGCTTAGAAGAATGGTTGCATCCAAGCACAAGAGCAGAAGAGGTAAGAGACAGAGACACCACTTTAAATCTTGTTCAGAGACAAGACATCGCCATTGATGTTGCTTGTGCATTAGATTATCTTCACAATCATTGTGATACACCAATAGTTCATTGTGATCTCAAGCCAACTAATGTTCTTTTGGACAAAGAGATTACTGGACACGTTTCTGACTTTGGGTTGGCAAGGATTCTCTCAAAGCTAATGAATAATGTTTCTGAAAATCAATCAAGCTCCATAGGAATCAGAGGATCCGTTGGTTATGCTGCTTCAGAATATGGTATGGGAAGTGAGGTGTCGACATATGGGGATGTATACAGCTTTGCTCTCCCTGAGCGCGTTGCAGAGATTGCAGGTTCAATGGTTCTTCTAGGAGGCATAAACAATATTAATGAAGCTCACCACAATCGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

240

Amino Acids

26.08

Weight (kDa)

5.41

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 211	5.3e-31	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	7 - 211	1.7e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42390 AT5G42390
fragaria_vesca	FvH4_1g30291 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800
malus_domestica	MD00G1159400.v1.1 MD00G1204700.v1.1
prunus_persica	Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1
pyrus_communis	pycom290g00010
rosa_chinensis	RchiOBHm_Chr3g0491051
rosa_laevigata	RLG00000022866
rosa_multiflora	Rmu_co8044182.1_g000001 Rmu_ssc0000386.1_g000043
rosa_roxburghii	Rroxscaffold_5G00351210 Rroxscaffold_6G00393270
rosa_rugosa	Rorug03G0245500 Rorug04G0069600 Rorug04G0069700 Rorug04G0070700 Rorug04G0070800
rosa_samantha	Rh3AG295700 Rh3BG331900 Rh3CG329000 Rh3DG329500
rosa_wichuraiana	Rw3G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	650
AccI	GTMKAC	2 cut(s)	605, 621
AccII	CGCG	1 cut(s)	645
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	3 cut(s)	55, 552, 565
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	34
AflIII	ACRYGT	2 cut(s)	108, 469
AgsI	TTSAA	5 cut(s)	18, 129, 207, 235, 666
AluBI	AGCT	6 cut(s)	125, 270, 508, 540, 627, 704
AluI	AGCT	6 cut(s)	125, 270, 508, 540, 627, 704
Alw26I	GTCTC	3 cut(s)	309, 315, 340
AlwI	GGATC	3 cut(s)	55, 552, 565
ApeKI	GCWGC	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	698
BamHI	GGATCC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	3 cut(s)	309, 315, 340
BfaI	CTAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
BmiI	GGNNCC	1 cut(s)	559
BmsI	GCATC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	286, 622
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	559
Bsh1236I	CGCG	1 cut(s)	645
BsmAI	GTCTC	3 cut(s)	309, 315, 340
Bsp143I	GATC	3 cut(s)	47, 424, 557
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	631
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	3 cut(s)	55, 552, 565
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	47, 424, 557
BssNAI	GTATAC	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	220
Bst1107I	GTATAC	1 cut(s)	622
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstDEI	CTNAG	2 cut(s)	271, 639
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	286, 622
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	3 cut(s)	50, 427, 560
BstMAI	GTCTC	3 cut(s)	309, 315, 340
BstMBI	GATC	3 cut(s)	47, 424, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstNSI	RCATGY	2 cut(s)	112, 204
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	47, 557
BstYI	RGATCY	2 cut(s)	47, 557
BstZ17I	GTATAC	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	2 cut(s)	124, 340
BtsCI	GGATG	2 cut(s)	286, 622
BveI	ACCTGC	1 cut(s)	650
CfoI	GCGC	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	3 cut(s)	109, 201, 221
CviJI	RGCY	8 cut(s)	125, 239, 270, 433, 508, 540, 627, 704
CviKI_1	RGCY	8 cut(s)	125, 239, 270, 433, 508, 540, 627, 704
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	271, 639
DpnI	GATC	3 cut(s)	49, 426, 559
DpnII	GATC	3 cut(s)	47, 424, 557
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	112, 204, 224
FatI	CATG	3 cut(s)	108, 200, 220
FauNDI	CATATG	1 cut(s)	610
FblI	GTMKAC	2 cut(s)	605, 621
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	2 cut(s)	273, 629
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	677
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	573
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	112, 204, 224
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	2 cut(s)	496, 549
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	606, 622
Hpy188I	TCNGA	5 cut(s)	345, 478, 526, 554, 580
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	2 cut(s)	606, 622
HpyAV	CCTTC	2 cut(s)	91, 112
HpyCH4IV	ACGT	2 cut(s)	471, 719
HpyCH4V	TGCA	5 cut(s)	200, 286, 377, 650, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	2 cut(s)	271, 639
HpySE526I	ACGT	2 cut(s)	471, 719
Hsp92II	CATG	3 cut(s)	112, 204, 224
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	47, 424, 557
LmnI	GCTCC	2 cut(s)	122, 545
LpnPI	CCDG	7 cut(s)	21, 53, 167, 227, 450, 645, 651
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	2 cut(s)	471, 719
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	3 cut(s)	49, 426, 559
MboI	GATC	3 cut(s)	47, 424, 557
MboII	GAAGA	5 cut(s)	6, 287, 317, 380, 665
MflI	RGATCY	2 cut(s)	47, 557
MluCI	AATT	1 cut(s)	22
MnlI	CCTC	6 cut(s)	145, 153, 301, 548, 592, 674
MseI	TTAA	4 cut(s)	105, 186, 332, 696
MslI	CAYNNNNRTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	47, 424, 557
NlaIII	CATG	3 cut(s)	112, 204, 224
NlaIV	GGNNCC	1 cut(s)	559
NmeAIII	GCCGAG	1 cut(s)	169
NspI	RCATGY	2 cut(s)	112, 204
PciI	ACATGT	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	496, 549
PkrI	GCNGC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	696
PsiI	TTATAA	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	47, 557
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	604
SaqAI	TTAA	4 cut(s)	105, 186, 332, 696
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	3 cut(s)	47, 424, 557
SfaNI	GCATC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	2 cut(s)	166, 694
SspMI	CTAG	1 cut(s)	677
StyI	CCWWGG	1 cut(s)	220
TaiI	ACGT	2 cut(s)	474, 722
TaqI	TCGA	3 cut(s)	175, 605, 715
TasI	AATT	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	496, 549
Tru1I	TTAA	4 cut(s)	105, 186, 332, 696
Tru9I	TTAA	4 cut(s)	105, 186, 332, 696
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	4 cut(s)	127, 407, 527, 714
TspGWI	ACGGA	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	696
XceI	RCATGY	2 cut(s)	112, 204
XmiI	GTMKAC	2 cut(s)	605, 621
XspI	CTAG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.