Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000386.1

Orthogroup ID

OG0003778

Physical Location & Seq

Genomic Coordinates Forward (+)

232784 .. 241821

Gene Structure 9038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000386.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2751 bp

atgtttggaaaagacccacgaagcttgggtttggaggaaaccttggaagggggagctaccgactcttcttcttcttcttccggccaatctccgcacccaaagttcgcccatcttggattctccttaaagccaatggcggctataagttctctggtgggaagcattcctcaaattggtccgacaatatgcagagatgatggttattcaaaaaggcgggcgaagaattctgtggtttctattaggggcccttgtctacccttattttcttctcagaccagacgtctgcttcaagttggttcgggtaaatcaagtttaccaagaaagaagaggaatagttgggaacaatgtatctccatatttggagagcctttgactggagcaccttttccccgaaagtataacggcatttctagctctttttgccaaagcagaagctcttcatggcaaagtagaagtcgtcttcgcctcaggacgtccacaccaagtgcctttcctgacagaacttctttctgtttatccaaccgtaaacttgagaaggcttttgtgaaggatctgcatattccatatgcaaccgtaggtccagatgagccacatgcagcaagtacatcttggccagatggtattcttgagaaacaggaggcagatttagtatatcctggagtagaacaaacagaggtagaggggtttctaagttctgaacttccatctcacccaaagttgtatcgaggacaactaaaaaatggtctgcgctatctgattttaccaaataaagttccgccaaacaggtttgaagcacacatggaagtgcatgtaggatcaatcgacgaggaagaggatgagcaagggattgcacatatgattgaacatgttgctttccttggaagtaagaaacgcgagaaacttcttgggacgggggctcgatccaatgcttacaccgatttccatcatacagtgtttcacatccattcgccacttagtacaaaggattctgatgaagatctccttccaaatgtgctggatgccttgaatgagattgcttttcacccaaaattcctttcttctcgtgttgagaaggaacggcgggctatactttcagaattacagatgatgaatacaatagattatcgcgttgactgccagttattacaacatctgcactctgaaaacaagctaagcaaaaggttcccgattggattagaggagcagattaagaagtgggatgtagataaagtgcgaaaatttcatgagcgttggtacttccctgcaaatgcaaccttatacattgttggggatattgacaacatctcaaaaacaattaaccaaattgaggctgtctttggacaaactggccaagaaaatgggtcagcacctactcctagtgcgtttggtgcaatggctagtttccttgtccctaagctttcagttggcctgactggaaatttgcctactgaaagatcgtctaattccattgatcaaacaaaactccttaaaaaggaaaagcacactgttcgtcctcctgtgaagcataattggtcactccctggaagtagtatgcatatgaagcctccacagatttttcagcatgaattgattcagaatttctcatttaatatgttctgcaagattcctgtgaacagggttcgaacatatggcgacttgcgaaatgttctaatgaagagaatatttctttctgctttgcatttccgaattaatacaagatacaagagttcaaacccaccatttacttcaattgaattggatcatagtgactctggaagggaaggatgcacagtcactactctcactgtaactgccgaacccaagaattggcaaactgcaataagagttgctgttcacgaggttagaaggctcaaagaatttggtgttactaagggtgaattgacacgttatatagatgctttattaaaagatagtgagcatctggcggctatgatagataatgtatcttcagttgataatttggatttcattatggagagtgatgcgctgggccatacagtaatggatcagagacaaggacatgacagtctggttgctgttgctggaactgttactcttgaagaggttaactctattggcgccaaggtgttggaatttgtttctgattttggaaagcctactgcaccccttcctgcagcgatcgttgcttgtgttccaaagaaagtgcatgttgatggaaagggtgaaactgagttcaccatttcccctgatgagattacagctgctacgagagctggattggaggacctcattgaacctgagccagagcttgaagtgccaaaagaattgatatcttcatcacagttgcagggattgaggcaggagcgcatgccatccttcatcacctgtagcccagaaacaaatatgacaaaaatttatgacaaggaaacagggatcactagagctcgtctttcaaatggaattgctgtaaattacaagatttcaaaaagtgaggctcggggaggtgtgatgaggcttatagttggtggtggacgggcaactgaaagtcctgaatcaaaaggttctgttgttgtgggtgtacgaactcttagcgagggaggtcgtgttggaaacttttcaagggagcagggaggcggacaaggagtccgctttaatgaactaaagagggcagctagggcaataggcctagcatctcgtctaataatactaaacaagggggcttatactacagctgcttgccagttaagaataatggaagaaagattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

916

Amino Acids

101.44

Weight (kDa)

8.89

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42390 AT5G42390
fragaria_vesca	FvH4_1g30291 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800
malus_domestica	MD00G1159400.v1.1 MD00G1204700.v1.1
prunus_persica	Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1
pyrus_communis	pycom290g00010
rosa_chinensis	RchiOBHm_Chr3g0491051
rosa_laevigata	RLG00000022866
rosa_multiflora	Rmu_co8044182.1_g000001 Rmu_ssc0000386.1_g000043
rosa_roxburghii	Rroxscaffold_5G00351210 Rroxscaffold_6G00393270
rosa_rugosa	Rorug03G0245500 Rorug04G0069600 Rorug04G0069700 Rorug04G0070700 Rorug04G0070800
rosa_samantha	Rh3AG295700 Rh3BG331900 Rh3CG329000 Rh3DG329500
rosa_wichuraiana	Rw3G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2749
AasI	GACNNNNNNGTC	1 cut(s)	2046
AatII	GACGTC	2 cut(s)	283, 476
AccB1I	GGYRCC	1 cut(s)	2099
AccB7I	CCANNNNNTGG	1 cut(s)	1827
AccI	GTMKAC	1 cut(s)	253
AccII	CGCG	2 cut(s)	894, 1128
AciI	CCGC	8 cut(s)	92, 137, 214, 776, 1081, 1946, 2616, 2629
AclWI	GGATC	6 cut(s)	558, 823, 915, 1767, 2034, 2423
AcoI	YGGCCR	3 cut(s)	82, 611, 1348
AcsI	RAATTY	8 cut(s)	223, 1049, 1238, 1438, 1597, 1877, 2114, 2394
AcuI	CTGAAG	1 cut(s)	1953
AcyI	GRCGYC	3 cut(s)	280, 473, 2100
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	4 cut(s)	604, 979, 1256, 2562
AfiI	CCNNNNNNNGG	6 cut(s)	48, 173, 374, 1327, 1492, 1827
AflIII	ACRYGT	2 cut(s)	865, 1904
AhdI	GACNNNNNGTC	2 cut(s)	279, 2624
AjnI	CCWGG	2 cut(s)	655, 1540
AjuI	GAANNNNNNNTTGG	2 cut(s)	1039, 1071
Alw21I	GWGCWC	2 cut(s)	382, 2428
Alw26I	GTCTC	1 cut(s)	2026
AlwI	GGATC	6 cut(s)	558, 823, 915, 1767, 2034, 2423
Ama87I	CYCGRG	1 cut(s)	2478
AoxI	GGCC	7 cut(s)	82, 244, 611, 1348, 1426, 2011, 2665
ApaI	GGGCCC	1 cut(s)	248
ApeKI	GCWGC	5 cut(s)	596, 2156, 2243, 2651, 2714
ApoI	RAATTY	8 cut(s)	223, 1049, 1238, 1438, 1597, 1877, 2114, 2394
ArsI	GACNNNNNNTTYG	4 cut(s)	439, 471, 1423, 1455
AseI	ATTAAT	1 cut(s)	1710
Asp700I	GAANNNNTTC	3 cut(s)	436, 1590, 2596
AspLEI	GCGC	4 cut(s)	750, 2008, 2102, 2349
AspS9I	GGNCC	6 cut(s)	176, 244, 245, 578, 2011, 2266
AsuHPI	GGTGA	6 cut(s)	701, 1034, 1907, 2209, 2216, 2356
AsuII	TTCGAA	1 cut(s)	1642
AvaI	CYCGRG	1 cut(s)	2478
AvaII	GGWCC	3 cut(s)	176, 578, 2266
AxyI	CCTNAGG	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	1711, 1744
BalI	TGGCCA	2 cut(s)	613, 1350
BanI	GGYRCC	1 cut(s)	2099
BanII	GRGCYC	3 cut(s)	248, 919, 2428
BauI	CACGAG	2 cut(s)	1062, 1856
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	382, 2428
BbvI	GCAGC	5 cut(s)	608, 2168, 2230, 2663, 2701
BccI	CCATC	7 cut(s)	117, 191, 611, 712, 951, 2189, 2362
BceAI	ACGGC	2 cut(s)	418, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	1490, 1524
BciT130I	CCWGG	2 cut(s)	657, 1542
BclI	TGATCA	1 cut(s)	1471
BcoDI	GTCTC	1 cut(s)	2026
BfaI	CTAG	6 cut(s)	411, 1377, 1398, 2421, 2655, 2669
BfmI	CTRYAG	3 cut(s)	2154, 2368, 2709
BfoI	RGCGCY	1 cut(s)	2103
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	7 cut(s)	138, 597, 1947, 2157, 2244, 2652, 2715
BlpI	GCTNAGC	1 cut(s)	1172
BlsI	GCNGC	7 cut(s)	139, 598, 1948, 2158, 2245, 2653, 2716
Bme1390I	CCNGG	2 cut(s)	657, 1542
Bme18I	GGWCC	3 cut(s)	176, 578, 2266
BmeRI	GACNNNNNGTC	2 cut(s)	279, 2624
BmeT110I	CYCGRG	1 cut(s)	2478
BmgT120I	GGNCC	6 cut(s)	176, 244, 245, 578, 2011, 2266
BmiI	GGNNCC	4 cut(s)	245, 246, 1184, 2101
BmrFI	CCNGG	2 cut(s)	657, 1542
BmsI	GCATC	6 cut(s)	1009, 1775, 1906, 1948, 1993, 2681
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	2075, 2107
BpmI	CTGGAG	2 cut(s)	396, 678
Bpu10I	CCTNAGC	2 cut(s)	1413, 2280
Bpu1102I	GCTNAGC	1 cut(s)	1172
Bpu14I	TTCGAA	1 cut(s)	1642
BpuEI	CTTGAG	2 cut(s)	551, 647
BsaBI	GATNNNNATC	2 cut(s)	942, 996
BsaHI	GRCGYC	3 cut(s)	280, 473, 2100
BsaJI	CCNNGG	4 cut(s)	42, 877, 1540, 2103
BsaXI	ACNNNNNCTCC	2 cut(s)	2571, 2601
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 173, 374, 1327, 1492, 1827
Bse1I	ACTGG	5 cut(s)	379, 1138, 1351, 1438, 2722
Bse21I	CCTNAGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	1398
Bse8I	GATNNNNATC	2 cut(s)	942, 996
BseBI	CCWGG	2 cut(s)	657, 1542
BseDI	CCNNGG	4 cut(s)	42, 877, 1540, 2103
BseGI	GGATG	6 cut(s)	841, 960, 1024, 1225, 1790, 2354
BseJI	GATNNNNATC	2 cut(s)	942, 996
BseLI	CCNNNNNNNGG	6 cut(s)	48, 173, 374, 1327, 1492, 1827
BseMI	GCAATG	1 cut(s)	1398
BseMII	CTCAG	4 cut(s)	284, 481, 2202, 2271
BseNI	ACTGG	5 cut(s)	379, 1138, 1351, 1438, 2722
BseRI	GAGGAG	1 cut(s)	1214
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	5 cut(s)	608, 2168, 2230, 2663, 2701
BseYI	CCCAGC	1 cut(s)	2008
BsgI	GTGCAG	2 cut(s)	1139, 2127
Bsh1236I	CGCG	2 cut(s)	894, 1128
Bsh1285I	CGRYCG	1 cut(s)	2163
BshFI	GGCC	7 cut(s)	84, 246, 613, 1350, 1428, 2013, 2667
BshNI	GGYRCC	1 cut(s)	2099
BsiEI	CGRYCG	1 cut(s)	2163
BsiHKAI	GWGCWC	2 cut(s)	382, 2428
BsiHKCI	CYCGRG	1 cut(s)	2478
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	2 cut(s)	922, 1394
BslI	CCNNNNNNNGG	6 cut(s)	48, 173, 374, 1327, 1492, 1827
BsmAI	GTCTC	1 cut(s)	2026
BsmFI	GGGAC	2 cut(s)	922, 1394
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	7 cut(s)	84, 246, 613, 1350, 1428, 2013, 2667
BsoBI	CYCGRG	1 cut(s)	2478
Bsp119I	TTCGAA	1 cut(s)	1642
Bsp120I	GGGCCC	1 cut(s)	244
Bsp1286I	GDGCHC	4 cut(s)	248, 382, 919, 2428
Bsp1720I	GCTNAGC	1 cut(s)	1172
BspACI	CCGC	8 cut(s)	92, 137, 214, 776, 1081, 1946, 2616, 2629
BspANI	GGCC	7 cut(s)	84, 246, 613, 1350, 1428, 2013, 2667
BspCNI	CTCAG	4 cut(s)	283, 480, 2203, 2272
BspFNI	CGCG	2 cut(s)	894, 1128
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	4 cut(s)	245, 246, 1184, 2101
BspMAI	CTGCAG	1 cut(s)	2158
BspPI	GGATC	6 cut(s)	558, 823, 915, 1767, 2034, 2423
BspQI	GCTCTTC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	1642
BspT107I	GGYRCC	1 cut(s)	2099
BsrDI	GCAATG	1 cut(s)	1398
BsrI	ACTGG	5 cut(s)	379, 1138, 1351, 1438, 2722
BssECI	CCNNGG	4 cut(s)	42, 877, 1540, 2103
BssNI	GRCGYC	3 cut(s)	280, 473, 2100
BssSI	CACGAG	2 cut(s)	1062, 1856
BssT1I	CCWWGG	3 cut(s)	42, 877, 2103
Bst2BI	CACGAG	2 cut(s)	1062, 1856
Bst2UI	CCWGG	2 cut(s)	657, 1542
Bst6I	CTCTTC	6 cut(s)	70, 320, 442, 825, 1670, 2076
BstACI	GRCGYC	3 cut(s)	280, 473, 2100
BstBI	TTCGAA	1 cut(s)	1642
BstC8I	GCNNGC	4 cut(s)	216, 1083, 2351, 2719
BstENI	CCTNNNNNAGG	1 cut(s)	1490
BstF5I	GGATG	6 cut(s)	841, 960, 1024, 1225, 1790, 2354
BstFNI	CGCG	2 cut(s)	894, 1128
BstH2I	RGCGCY	1 cut(s)	2103
BstHHI	GCGC	4 cut(s)	750, 2008, 2102, 2349
BstMAI	GTCTC	1 cut(s)	2026
BstMCI	CGRYCG	1 cut(s)	2163
BstMWI	GCNNNNNNNGC	9 cut(s)	411, 420, 1134, 1388, 1561, 2165, 2252, 2296, 2657
BstNI	CCWGG	2 cut(s)	657, 1542
BstNSI	RCATGY	5 cut(s)	596, 812, 869, 2192, 2353
BstSCI	CCNGG	2 cut(s)	655, 1540
BstSFI	CTRYAG	3 cut(s)	2154, 2368, 2709
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	2 cut(s)	894, 1128
BstV1I	GCAGC	5 cut(s)	608, 2168, 2230, 2663, 2701
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	550, 997
BstXI	CCANNNNNNTGG	2 cut(s)	1358, 2110
BstYI	RGATCY	2 cut(s)	550, 997
Bsu36I	CCTNAGG	1 cut(s)	467
BsuRI	GGCC	7 cut(s)	84, 246, 613, 1350, 1428, 2013, 2667
BtsCI	GGATG	6 cut(s)	841, 960, 1024, 1225, 1790, 2354
BtsIMutI	CAGTG	3 cut(s)	957, 1503, 1803
Cac8I	GCNNGC	4 cut(s)	216, 1083, 2351, 2719
CciI	TCATGA	1 cut(s)	1243
CfoI	GCGC	4 cut(s)	750, 2008, 2102, 2349
Cfr13I	GGNCC	6 cut(s)	176, 244, 245, 578, 2011, 2266
Csp6I	GTAC	4 cut(s)	603, 978, 1255, 2561
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviQI	GTAC	4 cut(s)	603, 978, 1255, 2561
DinI	GGCGCC	1 cut(s)	2101
DraIII	CACNNNGTG	1 cut(s)	485
DrdI	GACNNNNNNGTC	1 cut(s)	2046
DriI	GACNNNNNGTC	2 cut(s)	279, 2624
DseDI	GACNNNNNNGTC	1 cut(s)	2046
EaeI	YGGCCR	3 cut(s)	82, 611, 1348
Eam1104I	CTCTTC	6 cut(s)	70, 320, 442, 825, 1670, 2076
Eam1105I	GACNNNNNGTC	2 cut(s)	279, 2624
EarI	CTCTTC	6 cut(s)	70, 320, 442, 825, 1670, 2076
EciI	GGCGGA	2 cut(s)	765, 2631
Ecl136II	GAGCTC	1 cut(s)	2426
Eco130I	CCWWGG	3 cut(s)	42, 877, 2103
Eco147I	AGGCCT	1 cut(s)	2667
Eco24I	GRGCYC	3 cut(s)	248, 919, 2428
Eco32I	GATATC	1 cut(s)	2313
Eco47I	GGWCC	3 cut(s)	176, 578, 2266
Eco53kI	GAGCTC	1 cut(s)	2426
Eco57I	CTGAAG	1 cut(s)	1953
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	2478
EcoICRI	GAGCTC	1 cut(s)	2426
EcoNI	CCTNNNNNAGG	1 cut(s)	1490
EcoO109I	RGGNCCY	3 cut(s)	244, 245, 2266
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	655, 1540
EcoRV	GATATC	1 cut(s)	2313
EcoT14I	CCWWGG	3 cut(s)	42, 877, 2103
EcoT22I	ATGCAT	1 cut(s)	1557
EcoT38I	GRGCYC	3 cut(s)	248, 919, 2428
EgeI	GGCGCC	1 cut(s)	2101
EheI	GGCGCC	1 cut(s)	2101
ErhI	CCWWGG	3 cut(s)	42, 877, 2103
FalI	AAGNNNNNCTT	4 cut(s)	592, 624, 987, 1019
FaqI	GGGAC	2 cut(s)	922, 1394
FauI	CCCGC	2 cut(s)	207, 1074
FauNDI	CATATG	4 cut(s)	565, 855, 1557, 1648
FbaI	TGATCA	1 cut(s)	1471
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	7 cut(s)	138, 597, 1947, 2157, 2244, 2652, 2715
FokI	GGATG	6 cut(s)	848, 947, 1031, 1232, 1797, 2341
FriOI	GRGCYC	3 cut(s)	248, 919, 2428
Fsp4HI	GCNGC	7 cut(s)	138, 597, 1947, 2157, 2244, 2652, 2715
FspBI	CTAG	6 cut(s)	411, 1377, 1398, 2421, 2655, 2669
GlaI	GCGC	4 cut(s)	749, 2007, 2101, 2348
GluI	GCNGC	7 cut(s)	138, 597, 1947, 2157, 2244, 2652, 2715
GsaI	CCCAGC	1 cut(s)	2012
GsuI	CTGGAG	2 cut(s)	396, 678
HaeII	RGCGCY	1 cut(s)	2103
HaeIII	GGCC	7 cut(s)	84, 246, 613, 1350, 1428, 2013, 2667
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	4 cut(s)	750, 2008, 2102, 2349
Hin1I	GRCGYC	3 cut(s)	280, 473, 2100
Hin6I	GCGC	4 cut(s)	748, 2006, 2100, 2347
HinP1I	GCGC	4 cut(s)	748, 2006, 2100, 2347
HincII	GTYRAC	2 cut(s)	1132, 2089
HindII	GTYRAC	2 cut(s)	1132, 2089
HindIII	AAGCTT	2 cut(s)	22, 1415
HinfI	GANTC	8 cut(s)	62, 117, 986, 1591, 1624, 1769, 2534, 2625
HpaI	GTTAAC	1 cut(s)	2089
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	6 cut(s)	701, 1034, 1907, 2209, 2216, 2356
Hpy99I	CGWCG	1 cut(s)	827
HpyCH4IV	ACGT	3 cut(s)	280, 473, 1906
HpyF10VI	GCNNNNNNNGC	9 cut(s)	411, 420, 1134, 1388, 1561, 2165, 2252, 2296, 2657
HpySE526I	ACGT	3 cut(s)	280, 473, 1906
Hsp92I	GRCGYC	3 cut(s)	280, 473, 2100
HspAI	GCGC	4 cut(s)	748, 2006, 2100, 2347
KasI	GGCGCC	1 cut(s)	2099
Ksp22I	TGATCA	1 cut(s)	1471
KspAI	GTTAAC	1 cut(s)	2089
LguI	GCTCTTC	1 cut(s)	442
LmnI	GCTCC	5 cut(s)	53, 377, 1201, 2344, 2605
Lsp1109I	GCAGC	5 cut(s)	608, 2168, 2230, 2663, 2701
LweI	GCATC	6 cut(s)	1009, 1775, 1906, 1948, 1993, 2681
MaeI	CTAG	6 cut(s)	411, 1377, 1398, 2421, 2655, 2669
MaeII	ACGT	3 cut(s)	280, 473, 1906
MaeIII	GTNAC	6 cut(s)	1533, 1766, 1792, 1807, 1885, 2071
MfeI	CAATTG	1 cut(s)	1749
MflI	RGATCY	2 cut(s)	550, 997
MhlI	GDGCHC	4 cut(s)	248, 382, 919, 2428
MlsI	TGGCCA	2 cut(s)	613, 1350
MluNI	TGGCCA	2 cut(s)	613, 1350
Mly113I	GGCGCC	1 cut(s)	2100
MlyI	GAGTC	3 cut(s)	56, 1763, 2634
MmeI	TCCRAC	4 cut(s)	203, 543, 2091, 2569
Mox20I	TGGCCA	2 cut(s)	613, 1350
Mph1103I	ATGCAT	1 cut(s)	1557
MroXI	GAANNNNTTC	3 cut(s)	436, 1590, 2596
MscI	TGGCCA	2 cut(s)	613, 1350
MslI	CAYNNNNRTG	2 cut(s)	803, 2193
Msp20I	TGGCCA	2 cut(s)	613, 1350
MspA1I	CMGCKG	2 cut(s)	2243, 2714
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	657, 1542
MunI	CAATTG	1 cut(s)	1749
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	657, 1542
MvnI	CGCG	2 cut(s)	894, 1128
MwoI	GCNNNNNNNGC	9 cut(s)	411, 420, 1134, 1388, 1561, 2165, 2252, 2296, 2657
NarI	GGCGCC	1 cut(s)	2100
NdeI	CATATG	4 cut(s)	565, 855, 1557, 1648
NlaIV	GGNNCC	4 cut(s)	245, 246, 1184, 2101
NmuCI	GTSAC	3 cut(s)	1533, 1766, 1792
NsiI	ATGCAT	1 cut(s)	1557
NspI	RCATGY	5 cut(s)	596, 812, 869, 2192, 2353
NspV	TTCGAA	1 cut(s)	1642
PaeI	GCATGC	1 cut(s)	2353
PagI	TCATGA	1 cut(s)	1243
PceI	AGGCCT	1 cut(s)	2667
PciI	ACATGT	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	442
PctI	GAATGC	1 cut(s)	162
PdmI	GAANNNNTTC	3 cut(s)	436, 1590, 2596
PfeI	GAWTC	5 cut(s)	117, 986, 1591, 1624, 2534
PflMI	CCANNNNNTGG	1 cut(s)	1827
PfoI	TCCNGGA	1 cut(s)	655
PkrI	GCNGC	7 cut(s)	139, 598, 1948, 2158, 2245, 2653, 2716
Ple19I	CGATCG	1 cut(s)	2163
PleI	GAGTC	3 cut(s)	56, 1763, 2633
PluTI	GGCGCC	1 cut(s)	2103
PpsI	GAGTC	3 cut(s)	56, 1763, 2633
PpuMI	RGGWCCY	1 cut(s)	2266
PscI	ACATGT	1 cut(s)	865
PshBI	ATTAAT	1 cut(s)	1710
PsiI	TTATAA	1 cut(s)	2749
Psp124BI	GAGCTC	1 cut(s)	2428
Psp5II	RGGWCCY	1 cut(s)	2266
Psp6I	CCWGG	2 cut(s)	655, 1540
PspFI	CCCAGC	1 cut(s)	2008
PspGI	CCWGG	2 cut(s)	655, 1540
PspN4I	GGNNCC	4 cut(s)	245, 246, 1184, 2101
PspOMI	GGGCCC	1 cut(s)	244
PspPI	GGNCC	6 cut(s)	176, 244, 245, 578, 2011, 2266
PspPPI	RGGWCCY	1 cut(s)	2266
PstI	CTGCAG	1 cut(s)	2158
PsuI	RGATCY	2 cut(s)	550, 997
PvuI	CGATCG	1 cut(s)	2163
PvuII	CAGCTG	2 cut(s)	2243, 2714
RsaI	GTAC	4 cut(s)	604, 979, 1256, 2562
RsaNI	GTAC	4 cut(s)	603, 978, 1255, 2561
RseI	CAYNNNNRTG	2 cut(s)	803, 2193
SacI	GAGCTC	1 cut(s)	2428
SapI	GCTCTTC	1 cut(s)	442
SatI	GCNGC	7 cut(s)	138, 597, 1947, 2157, 2244, 2652, 2715
Sau96I	GGNCC	6 cut(s)	176, 244, 245, 578, 2011, 2266
SchI	GAGTC	3 cut(s)	56, 1763, 2634
ScrFI	CCNGG	2 cut(s)	657, 1542
SduI	GDGCHC	4 cut(s)	248, 382, 919, 2428
SfaNI	GCATC	6 cut(s)	1009, 1775, 1906, 1948, 1993, 2681
SfcI	CTRYAG	3 cut(s)	2154, 2368, 2709
SfoI	GGCGCC	1 cut(s)	2101
SfuI	TTCGAA	1 cut(s)	1642
SinI	GGWCC	3 cut(s)	176, 578, 2266
SmiMI	CAYNNNNRTG	2 cut(s)	803, 2193
SmlI	CTYRAG	2 cut(s)	530, 626
SmoI	CTYRAG	2 cut(s)	530, 626
SphI	GCATGC	1 cut(s)	2353
SseBI	AGGCCT	1 cut(s)	2667
SsiI	CCGC	8 cut(s)	92, 137, 214, 776, 1081, 1946, 2616, 2629
SspDI	GGCGCC	1 cut(s)	2099
SspI	AATATT	1 cut(s)	1683
SspMI	CTAG	6 cut(s)	411, 1377, 1398, 2421, 2655, 2669
SstI	GAGCTC	1 cut(s)	2428
StuI	AGGCCT	1 cut(s)	2667
StyD4I	CCNGG	2 cut(s)	655, 1540
StyI	CCWWGG	3 cut(s)	42, 877, 2103
TaiI	ACGT	3 cut(s)	283, 476, 1909
TaqI	TCGA	4 cut(s)	724, 822, 919, 1642
TatI	WGTACW	2 cut(s)	602, 977
TauI	GCSGC	2 cut(s)	140, 1949
TfiI	GAWTC	5 cut(s)	117, 986, 1591, 1624, 2534
TscAI	CASTG	3 cut(s)	957, 1510, 1810
TseFI	GTSAC	3 cut(s)	1533, 1766, 1792
TseI	GCWGC	5 cut(s)	596, 2156, 2243, 2651, 2714
Tsp45I	GTSAC	3 cut(s)	1533, 1766, 1792
TspRI	CASTG	3 cut(s)	957, 1510, 1810
Van91I	CCANNNNNTGG	1 cut(s)	1827
VpaK11BI	GGWCC	3 cut(s)	176, 578, 2266
VspI	ATTAAT	1 cut(s)	1710
XagI	CCTNNNNNAGG	1 cut(s)	1490
XapI	RAATTY	8 cut(s)	223, 1049, 1238, 1438, 1597, 1877, 2114, 2394
XceI	RCATGY	5 cut(s)	596, 812, 869, 2192, 2353
XmiI	GTMKAC	1 cut(s)	253
XmnI	GAANNNNTTC	3 cut(s)	436, 1590, 2596
XspI	CTAG	6 cut(s)	411, 1377, 1398, 2421, 2655, 2669
ZraI	GACGTC	2 cut(s)	281, 474
Zsp2I	ATGCAT	1 cut(s)	1557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.